| Suggests Me |
ACE, ADAM, ADAMgui, ADImpute, AffiXcan, affycoretools, aggregateBioVar, AHEnsDbs, AHLRBaseDbs, AHMassBank, AHMeSHDbs, AHPathbankDbs, AHPubMedDbs, AHWikipathwaysDbs, alabaster, alabaster.base, alabaster.bumpy, alabaster.files, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.schemas, alabaster.se, alabaster.spatial, alabaster.string, alabaster.vcf, ALDEx2, alevinQC, AllelicImbalance, AlphaMissense.v2023.hg19, AlphaMissense.v2023.hg38, AlpsNMR, AMARETTO, AMOUNTAIN, amplican, AneuFinder, animalcules, annotation, AnnotationDbi, AnnotationFilter, AnnotationForge, AnnotationHub, AnnotationHubData, annotationTools, annotatr, anota2seq, AnVIL, AnVILBilling, AnVILPublish, AnVILWorkflow, APAlyzer, APL, arrayQualityMetrics, arrays, artMS, ASGSCA, ASICS, ASICSdata, AssessORF, AssessORFData, ASSIGN, ATACseqQC, ATACseqTFEA, atena, atSNP, AUCell, autonomics, awst, BaalChIP, bacon, bamsignals, BANDITS, banocc, barcodetrackR, basecallQC, BASiCS, basilisk, basilisk.utils, batchelor, bayNorm, baySeq, beachmat, beachmat.hdf5, beadarray, BeadDataPackR, BEARscc, BEclear, beer, benchdamic, benchmarkfdrData2019, BG2, BgeeDB, bigmelon, bigPint, BindingSiteFinder, bioassayR, Biobase, biobtreeR, bioCancer, BioCartaImage, BiocBaseUtils, BiocBook, BiocCheck, BiocFHIR, BiocFileCache, BiocHail, BiocHubsShiny, BiocIO, BiocMetaWorkflow, BiocNeighbors, BiocOncoTK, BioCor, BiocParallel, BiocPkgTools, BiocSet, BiocSingular, BiocSklearn, biocthis, biocViews, biodb, biodbChebi, biodbExpasy, biodbHmdb, biodbKegg, biodbLipidmaps, biodbMirbase, biodbNcbi, biodbNci, biodbUniprot, BioImageDbs, biomaRt, biomformat, BioMM, BioNAR, BioNERO, BioPlex, biosigner, Biostrings, biotmle, biscuiteer, blacksheepr, blima, blimaTestingData, BloodCancerMultiOmics2017, bluster, bnbc, bnem, BOBaFIT, bodymapRat, borealis, brainflowprobes, branchpointer, breakpointR, breakpointRdata, brendaDb, brgedata, BRGenomics, BridgeDbR, BrowserViz, BSgenomeForge, bsseq, bugsigdbr, BUMHMM, BumpyMatrix, BUScorrect, BUSpaRse, BUSseq, cadd.v1.6.hg19, cadd.v1.6.hg38, CAEN, CAFE, CAGEfightR, cageminer, CAGEr, CAGEWorkflow, canceR, CancerInSilico, cardelino, Cardinal, CardinalIO, CardinalWorkflows, CARNIVAL, CATALYST, cbaf, CBEA, cBioPortalData, CBNplot, cbpManager, ccfindR, ccImpute, CCPlotR, ccrepe, CDI, celda, CellaRepertorium, CellBarcode, cellbaseR, CellBench, celldex, CelliD, cellity, CellMapper, CellMapperData, CellMixS, cellxgenedp, censcyt, Cepo, CexoR, cfdnakit, cfDNAPro, cfTools, cfToolsData, ChemmineDrugs, ChemmineOB, ChemmineR, Chicago, chihaya, ChIPComp, chipenrich, chipenrich.data, ChIPexoQual, ChIPexoQualExample, ChIPpeakAnno, ChIPQC, chipseq, chipseqDB, chipseqDBData, ChromSCape, chromstaR, CIMICE, CircSeqAlignTk, CiteFuse, ClassifyR, cleanUpdTSeq, cleaver, clevRvis, clipper, cliProfiler, CLLmethylation, clusterExperiment, clusterSeq, ClusterSignificance, clustifyr, clustifyrdatahub, ClustIRR, cmapR, CNEr, CNVfilteR, CNVMetrics, CNVRanger, COCOA, CoGAPS, cogeqc, Cogito, comapr, coMET, coMethDMR, compcodeR, CompoundDb, compSPOT, concordexR, CONFESS, consensusOV, consensusSeekeR, consICA, CONSTANd, contiBAIT, conumee, CopyhelpeR, CopyNeutralIMA, CopyNumberPlots, coRdon, CoRegNet, CoreGx, corral, coseq, CoSIA, CoSIAdata, COSMIC.67, cosmiq, COTAN, covRNA, cpvSNP, crisprBase, crisprBowtie, crisprBwa, crisprDesign, crisprScore, crisprScoreData, CRISPRseek, CrispRVariants, crisprVerse, crisprViz, csaw, csawUsersGuide, csdR, CSSQ, CTCF, CTdata, CTDquerier, ctsGE, CTSV, curatedBladderData, curatedCRCData, curatedMetagenomicData, curatedOvarianData, curatedTBData, curatedTCGAData, customCMPdb, cydar, CyTOFpower, CytoGLMM, cytoKernel, cytomapper, CytoPipeline, CytoPipelineGUI, cytoviewer, dada2, dagLogo, DAMEfinder, DaMiRseq, DAPAR, DAPARdata, dcanr, DCATS, dce, ddPCRclust, debCAM, decompTumor2Sig, decontam, decontX, deconvR, decoupleR, DEFormats, DEGreport, DelayedArray, DelayedDataFrame, DelayedMatrixStats, DelayedRandomArray, DelayedTensor, DELocal, demuxmix, demuxSNP, densvis, DEP, DepecheR, DepInfeR, depmap, DEqMS, derfinder, derfinderData, derfinderHelper, derfinderPlot, DEScan2, DESpace, DEWSeq, DExMA, DExMAdata, DEXSeq, DIAlignR, DiffBind, diffcyt, DifferentialRegulation, diffuStats, diffUTR, Dino, dir.expiry, discordant, distinct, dittoSeq, DMCFB, DmelSGI, DMRScan, dmrseq, DNABarcodeCompatibility, DNABarcodes, DNAfusion, DNAZooData, doppelgangR, dorothea, Doscheda, doseR, doubletrouble, drawProteins, dreamlet, DRIMSeq, DropletTestFiles, DropletUtils, drugTargetInteractions, DSS, dStruct, DuoClustering2018, dupRadar, easier, easierData, easylift, easyreporting, easyRNASeq, EBImage, EDASeq, edgeR, EGSEA, EGSEA123, eiR, eisaR, ELMER, ELMER.data, EmpiricalBrownsMethod, emtdata, ENmix, EnrichmentBrowser, enrichViewNet, ensembldb, EpiCompare, EpiDISH, epigraHMM, EpiMix, epimutacions, epimutacionsData, epiNEM, epistack, epistasisGA, EpiTxDb, EpiTxDb.Hs.hg38, EpiTxDb.Mm.mm10, EpiTxDb.Sc.sacCer3, epivizr, epivizrChart, epivizrData, epivizrServer, epivizrStandalone, erma, ERSSA, escape, escheR, EuPathDB, evaluomeR, EventPointer, EWCE, ewceData, excluderanges, ExperimentHub, ExperimentHubData, ExperimentSubset, ExploreModelMatrix, ExpressionNormalizationWorkflow, extraChIPs, FamAgg, famat, FastqCleaner, fastreeR, fastseg, fCCAC, fCI, fcScan, FEAST, FeatSeekR, FELLA, fenr, fgga, FilterFFPE, FindIT2, FLAMES, flowAI, flowcatchR, flowGraph, flowMap, FlowSOM, flowSpecs, fmcsR, fobitools, fourDNData, FRASER, furrowSeg, FuseSOM, GA4GHclient, GA4GHshiny, GARS, gatom, GBScleanR, gcapc, gDNAinRNAseqData, gDNAx, gDR, gDRcore, gDRimport, gDRstyle, gDRtestData, gDRutils, GDSArray, gemma.R, genbankr, GeneExpressionSignature, genefilter, genefu, GeneNetworkBuilder, GeneOverlap, geneplast, geneplast.data, geneplotter, generegulation, GENESIS, GeneStructureTools, GeneTonic, GENIE3, GenomAutomorphism, GenomeInfoDb, GenomicAlignments, GenomicDataCommons, GenomicDistributions, GenomicDistributionsData, GenomicFeatures, GenomicFiles, GenomicInteractionNodes, GenomicInteractions, GenomicPlot, GenomicRanges, GenomicScores, GenomicState, GenomicSuperSignature, GenomicTuples, GenVisR, GeuvadisTranscriptExpr, gg4way, ggbio, ggkegg, ggmanh, ggmsa, GGPA, ggspavis, GladiaTOX, Glimma, glmGamPoi, glmSparseNet, GloScope, gmoviz, GMRP, GNOSIS, GOexpress, GOfuncR, GOpro, goSorensen, goSTAG, GOstats, gpuMagic, GRaNIE, granulator, graper, graph, graphite, GreyListChIP, GRmetrics, groHMM, GSAR, gscreend, GSE103322, GSE13015, GSE159526, GSE62944, GSEABase, GSEABenchmarkeR, GSEAmining, GSgalgoR, GSVA, GUIDEseq, Gviz, GWAS.BAYES, gwascat, GWASTools, gwasurvivr, GWENA, Harman, HarmanData, hca, HCAData, HCATonsilData, HD2013SGI, HDCytoData, healthyControlsPresenceChecker, HelloRanges, HelloRangesData, hermes, Herper, HGC, HiCBricks, HiCDOC, HiCExperiment, HiContacts, HiContactsData, HiCool, hicVennDiagram, HighlyReplicatedRNASeq, highthroughputassays, Hiiragi2013, HiLDA, hipathia, HIREewas, HiTC, HMP16SData, HMP2Data, hoodscanR, HPAanalyze, hpAnnot, hpar, HPiP, HTSFilter, HubPub, HumanAffyData, HumanTranscriptomeCompendium, hummingbird, ideal, IFAA, iGC, IgGeneUsage, igvR, IHW, IHWpaper, illuminaio, ILoReg, imageHTS, IMAS, imcdatasets, imcRtools, immunoClust, immunotation, infercnv, Informeasure, InPAS, INSPEcT, INTACT, InTAD, InteractionSet, InterCellar, InterMineR, IntOMICS, IONiseR, iPath, IRanges, ISAnalytics, iSEE, iSEEde, iSEEhex, iSEEhub, iSEEindex, iSEEpathways, iSEEu, ISLET, IsoBayes, IsoCorrectoR, IsoCorrectoRGUI, isomiRs, IVAS, ivygapSE, JASPAR2022, JASPAR2024, karyoploteR, katdetectr, kissDE, LACE, ldblock, lefser, lemur, levi, liftOver, limma, lineagespot, LinkHD, Linnorm, lipidr, lisaClust, loci2path, LOLA, LoomExperiment, LowMACA, lpsymphony, LRBaseDbi, LRcell, LRcellTypeMarkers, m6Aboost, Macarron, MACSr, made4, maEndToEnd, MAGeCKFlute, magpie, magrene, MAI, mAPKL, marr, maser, MassSpecWavelet, MAST, mastR, MatrixQCvis, MatrixRider, matter, MBASED, MBECS, mbkmeans, mbQTL, MBttest, MCbiclust, mCSEA, mCSEAdata, mcsurvdata, MEAL, MEAT, MEB, MEDIPS, megadepth, MEIGOR, MerfishData, messina, metabCombiner, metabinR, MetaboAnnotation, MetaboCoreUtils, metabolomicsWorkbenchR, MetaboSignal, metagene, metagene2, MetaGxOvarian, MetaGxPancreas, MetaPhOR, metapod, MetaScope, metaseqR2, methimpute, methInheritSim, MethPed, MethReg, MethylAid, MethylAidData, methylCC, methylclock, methylclockData, methylInheritance, MethylMix, methylscaper, MethylSeqData, methylSig, MetNet, mfa, mia, miaSim, miaViz, microbiome, MicrobiomeBenchmarkData, microbiomeDataSets, microbiomeMarker, microSTASIS, MICSQTL, miloR, mimager, minfi, minionSummaryData, miQC, MIRA, miRcomp, miRmine, miRSM, miRspongeR, mirTarRnaSeq, missMethyl, missRows, mistyR, mixOmics, MLInterfaces, MMAPPR2, MMAPPR2data, MMDiff2, MMUPHin, mnem, moanin, MobilityTransformR, MODA, Modstrings, MOFA2, MOFAdata, mogsa, MoleculeExperiment, MOMA, monaLisa, Moonlight2R, MoonlightR, mosbi, MOSim, Motif2Site, motifbreakR, MotifDb, motifStack, MouseFM, MouseGastrulationData, MouseThymusAgeing, mpra, MQmetrics, MSA2dist, MsBackendMassbank, MsBackendMgf, MsBackendMsp, MsBackendRawFileReader, MsBackendSql, MsCoreUtils, MsDataHub, MsExperiment, MsFeatures, msigdb, msImpute, mslp, MSMB, MSnbase, MSPrep, msPurity, msqc1, msqrob2, MsQuality, MSstats, MSstatsLiP, MSstatsLOBD, MSstatsSampleSize, MSstatsTMT, MuData, MultiAssayExperiment, MultiBaC, multicrispr, MultiDataSet, multiGSEA, multiHiCcompare, multiMiR, MultimodalExperiment, MultiRNAflow, multiSight, multiWGCNA, mumosa, MungeSumstats, muscat, muscData, musicatk, MutationalPatterns, MWASTools, mygene, myvariant, mzR, NADfinder, NanoMethViz, NanoStringDiff, nanotubes, ncGTW, ncRNAtools, ndexr, Nebulosa, nempi, NestLink, NetActivity, NetActivityData, netbiov, netDx, nethet, netOmics, NetPathMiner, netprioR, netSmooth, NeuCA, NewWave, ngsReports, nipalsMCIA, nnSVG, nondetects, NormalyzerDE, normr, NPARC, npGSEA, nucleoSim, nucleR, oligo, omicade4, omicRexposome, omicsPrint, omicsViewer, Omixer, OmnipathR, OnassisJavaLibs, oncoscanR, OncoScore, OncoSimulR, ontoProc, optimalFlow, optimalFlowData, OPWeight, ORFhunteR, ORFik, Organism.dplyr, OrganismDbi, orthogene, orthos, orthosData, Oscope, OUTRIDER, OutSplice, OVESEG, PAA, packFinder, padma, PAIRADISE, pairedGSEA, pairkat, PanomiR, PANTHER.db, PanViz, parathyroidSE, pareg, parglms, parody, partCNV, pasilla, PasillaTranscriptExpr, Path2PPI, paxtoolsr, pcaExplorer, PCAN, PCHiCdata, PDATK, PeacoQC, peakPantheR, PepsNMR, PepsNMRData, pfamAnalyzeR, phantasus, phantasusLite, PharmacoGx, phastCons35way.UCSC.mm39, phemd, phenomis, phenopath, philr, PhIPData, PhosR, phyloP35way.UCSC.mm39, phyloseq, Pi, piano, pipeComp, planttfhunter, plasmut, plethy, plotGrouper, plyinteractions, plyranges, pmp, PoDCall, pogos, POMA, powerTCR, POWSC, ppcseq, pqsfinder, pram, preciseTAD, preciseTADhub, PrInCE, proDA, profileplyr, profileScoreDist, progeny, projectR, pRoloc, pRolocGUI, PROPER, Prostar, proteasy, ProteoDisco, ProteoMM, PSEA, PSMatch, psygenet2r, ptairData, ptairMS, PureCN, PWMEnrich, qcmetrics, QDNAseq, QFeatures, qmtools, qpgraph, qsea, qsmooth, QSutils, qsvaR, QTLExperiment, Qtlizer, quantiseqr, quantro, QuasR, R3CPET, RadioGx, raer, raerdata, RaggedExperiment, RAIDS, rain, ramwas, RandomWalkRestartMH, randRotation, RAREsim, Rarr, rat2302frmavecs, rawrr, RBGL, RBioFormats, Rbowtie, Rbwa, rcellminer, rcellminerData, rCGH, RcisTarget, Rcollectl, RCSL, Rcwl, RcwlPipelines, RCX, RCy3, RCyjs, rDGIdb, ReactomePA, recount, recount3, recountmethylation, recountWorkflow, recoup, RedeR, RedisParam, regionalpcs, RegionalST, regioneR, regioneReloaded, regsplice, regutools, ReQON, ResidualMatrix, RESOLVE, restfulSE, restfulSEData, retrofit, ReUseData, rexposome, rfaRm, Rfastp, RforProteomics, rfPred, RGMQL, RGMQLlib, RgnTX, rgoslin, RGraph2js, RGSEA, rhdf5, rhdf5client, rhdf5filters, Rhdf5lib, Rhisat2, Rhtslib, RiboCrypt, RiboProfiling, riboSeqR, ribosomeProfilingQC, rifi, rifiComparative, RIVER, RJMCMCNucleosomes, RLHub, RLSeq, RMassBank, rmspc, RNAmodR, RNAmodR.AlkAnilineSeq, RNAmodR.Data, RNAmodR.ML, RNAmodR.RiboMethSeq, RNAseq123, rnaseqcomp, RNAseqCovarImpute, RnaSeqSampleSize, RnaSeqSampleSizeData, Rnits, roastgsa, ROC, ROCpAI, rols, ropls, rprimer, rpx, rqt, rrvgo, Rsamtools, rScudo, rsemmed, rSWeeP, RTCGAToolbox, RTN, RTNduals, RTNsurvival, Rtpca, rTRM, RUVSeq, Rvisdiff, RVS, rWikiPathways, S4Arrays, S4Vectors, sampleClassifier, sampleClassifierData, sangerseqR, satuRn, SC3, ScaledMatrix, scanMiR, scanMiRApp, scanMiRData, SCArray.sat, scATAC.Explorer, scater, SCBN, scBubbletree, scCB2, scClassify, sccomp, scDblFinder, scDD, scDDboost, scDesign3, scds, SCFA, scFeatureFilter, scFeatures, scifer, SCLCBam, scmap, scMerge, scMultiome, SCnorm, scone, scoreInvHap, scp, scPCA, scpdata, scPipe, scran, scReClassify, screenCounter, ScreenR, scRepertoire, scRNAseq, scRNAseqApp, scruff, scTHI, scTreeViz, scuttle, scviR, sechm, segmentSeq, selectKSigs, seq.hotSPOT, seqArchR, seqArchRplus, seqCAT, SeqGate, seqLogo, seqpac, seqPattern, seqsetvis, SeqSQC, sequencing, SeqVarTools, sesame, SEtools, sevenC, seventyGeneData, SFEData, SGSeq, SharedObject, shinyepico, shinyMethyl, ShortRead, SIAMCAT, SigCheck, SigFuge, signatureSearch, signifinder, SigsPack, SimBenchData, SIMD, SimFFPE, similaRpeak, SIMLR, simpleSeg, sincell, single, Single.mTEC.Transcriptomes, SingleCellExperiment, SingleCellMultiModal, singleCellTK, SingleR, singscore, SingscoreAMLMutations, SiPSiC, sitadela, sitePath, slalom, slingshot, SMAD, smokingMouse, snapcount, snifter, SNPediaR, SNPhood, SNPhoodData, soGGi, SomaScan.db, SOMNiBUS, sparrow, SparseArray, sparseDOSSA, sparseMatrixStats, sparsenetgls, SparseSignatures, spaSim, SpatialCPie, SpatialDatasets, spatialDE, spatialDmelxsim, SpatialExperiment, SpatialFeatureExperiment, spatialHeatmap, spatialLIBD, speckle, specL, Spectra, SpectralTAD, SPIAT, spicyR, spicyWorkflow, SpidermiR, splatter, SPLINTER, splots, SpotClean, SPOTlight, spqn, SPsimSeq, sRACIPE, srnadiff, sSNAPPY, ssrch, stageR, StarBioTrek, STATegRa, Statial, statTarget, STdeconvolve, STexampleData, stJoincount, strandCheckR, struct, Structstrings, structToolbox, SubCellBarCode, SUITOR, SummarizedBenchmark, SummarizedExperiment, sva, svaRetro, SVMDO, swfdr, switchde, synapsis, synapter, synaptome.data, SynExtend, synlet, syntenet, systemPipeR, systemPipeRdata, systemPipeShiny, systemPipeTools, TabulaMurisData, TabulaMurisSenisData, tadar, TADCompare, tanggle, TAPseq, TargetDecoy, TargetSearch, tartare, TBSignatureProfiler, TCGAbiolinks, TCGAbiolinksGUI.data, TCGAutils, TCGAWorkflowData, TDbasedUFE, TDbasedUFEadv, TEKRABber, TENxBrainData, TENxBUSData, TENxIO, TENxPBMCData, tenXplore, TENxVisiumData, terraTCGAdata, TFARM, TFBSTools, TFHAZ, TFutils, tidybulk, tidySingleCellExperiment, tidySummarizedExperiment, tigre, TileDBArray, timecoursedata, timeOmics, TimerQuant, tissueTreg, TMExplorer, TMixClust, TOAST, tomoda, tomoseqr, TOP, topconfects, topdownr, ToxicoGx, TPP, TPP2D, tracktables, trackViewer, TrajectoryUtils, transcriptogramer, transcriptR, transformGamPoi, transomics2cytoscape, traseR, Travel, TreeAndLeaf, treekoR, TreeSummarizedExperiment, TREG, Trendy, TRESS, tricycle, tripr, tRNA, tRNAdbImport, tRNAscanImport, TRONCO, TTMap, tuberculosis, TurboNorm, TVTB, tweeDEseqCountData, twoddpcr, txcutr, UCell, UCSCRepeatMasker, Ularcirc, UMI4Cats, uncoverappLib, UniProt.ws, updateObject, variancePartition, VariantAnnotation, VariantExperiment, VariantFiltering, variants, VariantToolsData, VCFArray, VDJdive, VectraPolarisData, velociraptor, VERSO, vidger, ViSEAGO, vissE, Voyager, vsclust, vsn, wateRmelon, wavClusteR, WeberDivechaLCdata, weitrix, wpm, xcms, xcore, Xeva, XNAString, yamss, YAPSA, zebrafishRNASeq, zellkonverter, zenith, zinbwave, zlibbioc, ZygosityPredictor |
, Mike Smith [ctb]