gDR
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see gDR.
Umbrella package for R packages in the gDR suite
Bioconductor version: 3.18
Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.
Author: Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
citation("gDR")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gDR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDR")| Running the drug response processing pipeline | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, ShinyApps, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (0.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2), gDRcore(>= 0.99.12), gDRimport(>= 0.99.10), gDRutils(>= 0.99.13) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, BumpyMatrix, futile.logger, gDRstyle(>= 0.99.11), gDRtestData(>= 0.99.11), kableExtra, knitr, markdown, purrr, rmarkdown, SummarizedExperiment, testthat, yaml |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gDR_1.0.0.tar.gz |
| Windows Binary | gDR_1.0.0.zip |
| macOS Binary (x86_64) | gDR_1.0.0.tgz |
| macOS Binary (arm64) | gDR_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gDR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gDR |
| Bioc Package Browser | https://code.bioconductor.org/browse/gDR/ |
| Package Short Url | https://bioconductor.org/packages/gDR/ |
| Package Downloads Report | Download Stats |