Herper
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see Herper.
The Herper package is a simple toolset to install and manage conda packages and environments from R
Bioconductor version: 3.18
Many tools for data analysis are not available in R, but are present in public repositories like conda. The Herper package provides a comprehensive set of functions to interact with the conda package managament system. With Herper users can install, manage and run conda packages from the comfort of their R session. Herper also provides an ad-hoc approach to handling external system requirements for R packages. For people developing packages with python conda dependencies we recommend using basilisk (https://bioconductor.org/packages/release/bioc/html/basilisk.html) to internally support these system requirments pre-hoc.
Author: Matt Paul [aut] 
, Thomas Carroll [aut, cre] , Doug Barrows [aut], Kathryn Rozen-Gagnon [ctb]
Maintainer: Thomas Carroll <tc.infomatics at gmail.com>
citation("Herper")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Herper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Herper")| Quick Start | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0), reticulate |
| Imports | utils, rjson, withr, stats |
| System Requirements | |
| URL | https://github.com/RockefellerUniversity/Herper |
See More
| Suggests | BiocStyle, testthat, knitr, rmarkdown, seqCNA |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Herper_1.12.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | Herper_1.12.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Herper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Herper |
| Bioc Package Browser | https://code.bioconductor.org/browse/Herper/ |
| Package Short Url | https://bioconductor.org/packages/Herper/ |
| Package Downloads Report | Download Stats |