rpx
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see rpx.
R Interface to the ProteomeXchange Repository
Bioconductor version: 3.18
The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.
Author: Laurent Gatto
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
Citation (from within R, enter
citation("rpx")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rpx")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rpx")
An R interface to the ProteomeXchange repository | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient |
Version | 2.10.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
License | GPL-2 |
Depends | R (>= 3.5.0), methods |
Imports | BiocFileCache, jsonlite, xml2, RCurl, curl, utils |
System Requirements | |
URL | https://github.com/lgatto/rpx |
Bug Reports | https://github.com/lgatto/rpx/issues |
See More
Suggests | Biostrings, BiocStyle, testthat, knitr, tibble, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | MsExperiment, MSnbase, PSMatch, RforProteomics |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | rpx_2.10.0.tar.gz |
Windows Binary | rpx_2.10.0.zip |
macOS Binary (x86_64) | rpx_2.10.0.tgz |
macOS Binary (arm64) | rpx_2.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/rpx |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rpx |
Bioc Package Browser | https://code.bioconductor.org/browse/rpx/ |
Package Short Url | https://bioconductor.org/packages/rpx/ |
Package Downloads Report | Download Stats |