SUITOR
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see SUITOR.
Selecting the number of mutational signatures through cross-validation
Bioconductor version: 3.18
An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.
Author: DongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre]
Maintainer: Bill Wheeler <wheelerb at imsweb.com>
citation("SUITOR")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SUITOR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SUITOR")| SUITOR: selecting the number of mutational signatures | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Genetics, Software, SomaticMutation |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (1.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.2.0) |
| Imports | stats, utils, graphics, ggplot2, BiocParallel |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/wheelerb/SUITOR/issues |
See More
| Suggests | devtools, MutationalPatterns, RUnit, BiocManager, BiocGenerics, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SUITOR_1.4.0.tar.gz |
| Windows Binary | SUITOR_1.4.0.zip |
| macOS Binary (x86_64) | SUITOR_1.4.0.tgz |
| macOS Binary (arm64) | SUITOR_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SUITOR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SUITOR |
| Bioc Package Browser | https://code.bioconductor.org/browse/SUITOR/ |
| Package Short Url | https://bioconductor.org/packages/SUITOR/ |
| Package Downloads Report | Download Stats |