SC3
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see SC3.
Single-Cell Consensus Clustering
Bioconductor version: 3.18
A tool for unsupervised clustering and analysis of single cell RNA-Seq data.
Author: Vladimir Kiselev
Maintainer: Vladimir Kiselev <vladimir.yu.kiselev at gmail.com>
Citation (from within R, enter
citation("SC3")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SC3")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SC3")| SC3 package manual | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Classification, Clustering, DataRepresentation, DifferentialExpression, DimensionReduction, GUI, ImmunoOncology, RNASeq, SingleCell, Software, SupportVectorMachine, Transcription, Transcriptomics, Visualization |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL-3 |
| Depends | R (>= 3.3) |
| Imports | graphics, stats, utils, methods, e1071, parallel, foreach, doParallel, doRNG, shiny, ggplot2, pheatmap (>= 1.0.8), ROCR, robustbase, rrcov, cluster, WriteXLS, Rcpp (>= 0.11.1), SummarizedExperiment, SingleCellExperiment, BiocGenerics, S4Vectors |
| System Requirements | |
| URL | https://github.com/hemberg-lab/SC3 |
| Bug Reports | https://support.bioconductor.org/t/sc3/ |
See More
| Suggests | knitr, rmarkdown, mclust, scater, BiocStyle |
| Linking To | Rcpp, RcppArmadillo |
| Enhances | |
| Depends On Me | |
| Imports Me | FEAST |
| Suggests Me | InteractiveComplexHeatmap, scTreeViz, VAExprs |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SC3_1.30.0.tar.gz |
| Windows Binary | SC3_1.30.0.zip |
| macOS Binary (x86_64) | SC3_1.30.0.tgz |
| macOS Binary (arm64) | SC3_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SC3 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SC3 |
| Bioc Package Browser | https://code.bioconductor.org/browse/SC3/ |
| Package Short Url | https://bioconductor.org/packages/SC3/ |
| Package Downloads Report | Download Stats |