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HPAanalyze

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see HPAanalyze.

Retrieve and analyze data from the Human Protein Atlas


Bioconductor version: 3.18

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Citation (from within R, enter citation("HPAanalyze")):

Installation

To install this package, start R (version "4.3") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HPAanalyze")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HPAanalyze")
1. Quick-start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function with HPAanalyze HTML R Script
2. In-depth: Working with Human Protein Atlas (HPA) data in R with HPAanalyze HTML R Script
3. Tutorial: Combine HPAanalyze with your Human Protein Atlas (HPA) queries HTML R Script
4. Tutorial: Working with Human Protein Atlas (HPA) xml files offline HTML R Script
5. Tutorial: Export Human Protein Atlas (HPA) data as JSON HTML R Script
6. Tutorial: Download histology images from the Human Protein Atlas HTML R Script
99. Code for figures from HPAanalyze paper HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBiology, Proteomics, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5.0)
Imports dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra
System Requirements
URL https://github.com/anhtr/HPAanalyze
Bug Reports https://github.com/anhtr/HPAanalyze/issues
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Suggests knitr, rmarkdown, markdown, devtools, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HPAanalyze_1.20.0.tar.gz
Windows Binary HPAanalyze_1.20.0.zip (64-bit only)
macOS Binary (x86_64) HPAanalyze_1.20.0.tgz
macOS Binary (arm64) HPAanalyze_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HPAanalyze
Bioc Package Browser https://code.bioconductor.org/browse/HPAanalyze/
Package Short Url https://bioconductor.org/packages/HPAanalyze/
Package Downloads Report Download Stats