liftOver
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see liftOver.
Changing genomic coordinate systems with rtracklayer::liftOver
Bioconductor version: 3.18
The liftOver facilities developed in conjunction with the UCSC browser track infrastructure are available for transforming data in GRanges formats. This is illustrated here with an image of the EBI/NHGRI GWAS catalog that is, as of May 10 2017, distributed with coordinates defined by NCBI build hg38.
Author: Bioconductor Package Maintainer [aut, cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("liftOver")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("liftOver")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("liftOver")
Changing genomic coordinate systems with rtracklayer::liftOver | HTML | R Script |
Details
biocViews | BasicWorkflow, Workflow |
Version | 1.26.0 |
License | Artistic-2.0 |
Depends | R (>= 3.3.0), gwascat, GenomicRanges, rtracklayer, Homo.sapiens, BiocGenerics |
Imports | |
System Requirements | |
URL | https://www.bioconductor.org/help/workflows/liftOver/ |
See More
Suggests | knitr, rmarkdown, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | liftOver_1.26.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/liftOver |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/liftOver |
Package Short Url | https://bioconductor.org/packages/liftOver/ |
Package Downloads Report | Download Stats |