LoomExperiment
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see LoomExperiment.
LoomExperiment container
Bioconductor version: 3.18
The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.
Author: Martin Morgan, Daniel Van Twisk
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("LoomExperiment")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LoomExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LoomExperiment")| An introduction to the LoomExperiment class | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), S4Vectors, SingleCellExperiment, SummarizedExperiment, methods, rhdf5, BiocIO |
| Imports | DelayedArray, GenomicRanges, HDF5Array, Matrix, stats, stringr, utils |
| System Requirements | |
| URL |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, reticulate |
| Linking To | |
| Enhances | |
| Depends On Me | OSCA.intro |
| Imports Me | scfetch |
| Suggests Me | adverSCarial, hca |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LoomExperiment_1.20.0.tar.gz |
| Windows Binary | LoomExperiment_1.20.0.zip (64-bit only) |
| macOS Binary (x86_64) | LoomExperiment_1.20.0.tgz |
| macOS Binary (arm64) | LoomExperiment_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/LoomExperiment |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LoomExperiment |
| Bioc Package Browser | https://code.bioconductor.org/browse/LoomExperiment/ |
| Package Short Url | https://bioconductor.org/packages/LoomExperiment/ |
| Package Downloads Report | Download Stats |