GenomeInfoDb
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GenomeInfoDb.
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Bioconductor version: 3.9
Contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.
Author: Sonali Arora, Martin Morgan, Marc Carlson, H. Pagès
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("GenomeInfoDb")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomeInfoDb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomeInfoDb")
GenomeInfoDb: Introduction to GenomeInfoDb | R Script | |
GenomeInfoDb: Submitting your organism to GenomeInfoDb | R Script | |
Reference Manual | ||
NEWS | Text | |
Simple tasks genomeInfoDb | Video |
Details
biocViews | Annotation, DataRepresentation, Genetics, GenomeAnnotation, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
License | Artistic-2.0 |
Depends | R (>= 3.1), methods, BiocGenerics(>= 0.13.8), S4Vectors(>= 0.17.25), IRanges(>= 2.13.12) |
Imports | stats, stats4, utils, RCurl, GenomeInfoDbData |
System Requirements | |
URL |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GenomeInfoDb_1.20.0.tar.gz |
Windows Binary | GenomeInfoDb_1.20.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | GenomeInfoDb_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GenomeInfoDb |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomeInfoDb |
Bioc Package Browser | https://code.bioconductor.org/browse/GenomeInfoDb/ |
Package Short Url | https://bioconductor.org/packages/GenomeInfoDb/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |