heatmaps
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see heatmaps.
Flexible Heatmaps for Functional Genomics and Sequence Features
Bioconductor version: 3.9
This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.
Author: Malcolm Perry <mgperry32 at gmail.com>
Maintainer: Malcolm Perry <mgperry32 at gmail.com>
citation("heatmaps")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("heatmaps")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("heatmaps")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FunctionalGenomics, SequenceMatching, Software, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4) |
| Imports | methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | heatmaps_1.8.0.tar.gz |
| Windows Binary | heatmaps_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | heatmaps_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/heatmaps |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/heatmaps |
| Bioc Package Browser | https://code.bioconductor.org/browse/heatmaps/ |
| Package Short Url | https://bioconductor.org/packages/heatmaps/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |