methInheritSim
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see methInheritSim.
Simulating Whole-Genome Inherited Bisulphite Sequencing Data
Bioconductor version: 3.9
Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.
Author: Pascal Belleau, Astrid Deschênes and Arnaud Droit
Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>
Citation (from within R, enter
citation("methInheritSim")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methInheritSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methInheritSim")| Simulating Whole-Genome Inherited Bisulphite Sequencing Data | HTML | R Script |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4) |
| Imports | methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm |
| System Requirements | |
| URL | https://github.com/belleau/methInheritSim |
| Bug Reports | https://github.com/belleau/methInheritSim/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, RUnit, methylInheritance |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | methylInheritance |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | methInheritSim_1.6.0.tar.gz |
| Windows Binary | methInheritSim_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | methInheritSim_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/methInheritSim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/methInheritSim |
| Bioc Package Browser | https://code.bioconductor.org/browse/methInheritSim/ |
| Package Short Url | https://bioconductor.org/packages/methInheritSim/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |