myvariant
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see myvariant.
Accesses MyVariant.info variant query and annotation services
Bioconductor version: 3.9
MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services
Author: Adam Mark
Maintainer: Adam Mark, Chunlei Wu <cwu at scripps.edu>
Citation (from within R, enter
citation("myvariant")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("myvariant")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("myvariant")| Using MyVariant.R | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, GenomicVariation, Software, VariantAnnotation |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.1), VariantAnnotation |
| Imports | httr, jsonlite, S4Vectors, Hmisc, plyr, magrittr, GenomeInfoDb |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | myvariant_1.14.0.tar.gz |
| Windows Binary | myvariant_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | myvariant_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/myvariant |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/myvariant |
| Bioc Package Browser | https://code.bioconductor.org/browse/myvariant/ |
| Package Short Url | https://bioconductor.org/packages/myvariant/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |