DeepBlueR
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DeepBlueR.
DeepBlueR
Bioconductor version: 3.9
Accessing the DeepBlue Epigenetics Data Server through R.
Author: Felipe Albrecht, Markus List
Maintainer: Felipe Albrecht <felipe.albrecht at mpi-inf.mpg.de>, Markus List <markus.list at wzw.tum.de>
Citation (from within R, enter
citation("DeepBlueR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DeepBlueR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DeepBlueR")| The DeepBlue epigenomic data server - R package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, CpGIsland, DNAMethylation, DataImport, DataRepresentation, Epigenetics, GeneRegulation, GenomeAnnotation, ImmunoOncology, Preprocessing, Software, ThirdPartyClient |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL (>=2.0) |
| Depends | R (>= 3.3), XML, RCurl |
| Imports | GenomicRanges, data.table, stringr, diffr, dplyr, methods, rjson, utils, R.utils, foreach, withr, rtracklayer, GenomeInfoDb, settings, filehash |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr, RColorBrewer, matrixStats |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DeepBlueR_1.10.0.tar.gz |
| Windows Binary | DeepBlueR_1.10.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | DeepBlueR_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DeepBlueR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DeepBlueR |
| Bioc Package Browser | https://code.bioconductor.org/browse/DeepBlueR/ |
| Package Short Url | https://bioconductor.org/packages/DeepBlueR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |