MTseeker
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MTseekerData.
Bioconductor Tools for Human Mitochondrial Variant Analysis
Bioconductor version: 3.9
Variant analysis tools for mitochondrial genetics.
Author: Tim Triche [cre, aut], Noor Sohail [aut], Ben Johnson [aut], Tim Vickers [ctb], Azif Zubair [ctb]
Maintainer: Tim Triche <tim.triche at gmail.com>
citation("MTseeker")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MTseeker")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MTseeker")| MTseeker example | HTML | R Script |
| Reference Manual |
Details
| biocViews | Genetics, Metabolomics, Software, VariantAnnotation |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-3 |
| Depends | viridis, S4Vectors, GenomeInfoDb, GenomicAlignments, VariantAnnotation |
| Imports | xml2, utils, gmapR, methods, IRanges, Biobase, circlize, jsonlite, graphics, Rsamtools, grDevices, Biostrings, rtracklayer, VariantTools, Homo.sapiens, BiocGenerics, GenomicRanges, GenomicFeatures, SummarizedExperiment |
| System Requirements | |
| URL |
See More
| Suggests | MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2, pkgdown, knitr, rsvg |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MTseekerData |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MTseeker_1.2.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | MTseeker_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MTseeker |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MTseeker |
| Bioc Package Browser | https://code.bioconductor.org/browse/MTseeker/ |
| Package Short Url | https://bioconductor.org/packages/MTseeker/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |