genbankr
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see genbankr.
Parsing GenBank files into semantically useful objects
Bioconductor version: 3.9
Reads Genbank files.
Author: Gabriel Becker [aut, cre], Michael Lawrence [aut]
Maintainer: Gabriel Becker <becker.gabriel at gene.com>
Citation (from within R, enter
citation("genbankr")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("genbankr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genbankr")| An introduction to genbankr | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | Artistic-2.0 |
| Depends | methods |
| Imports | BiocGenerics, IRanges(>= 2.13.15), GenomicRanges(>= 1.31.10), GenomicFeatures(>= 1.31.5), Biostrings, VariantAnnotation, rtracklayer, S4Vectors(>= 0.17.28), GenomeInfoDb, Biobase |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, rentrez, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | genbankr_1.12.0.tar.gz |
| Windows Binary | genbankr_1.12.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | genbankr_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/genbankr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/genbankr |
| Bioc Package Browser | https://code.bioconductor.org/browse/genbankr/ |
| Package Short Url | https://bioconductor.org/packages/genbankr/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |