BioC 3.5: CHECK report for flowQB on toluca2
This page was generated on 2017-04-23 14:36:31 -0400 (Sun, 23 Apr 2017).
flowQB 2.3.3 Josef Spidlen
Snapshot Date: 2017-04-22 17:18:01 -0400 (Sat, 22 Apr 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowQB | Last Changed Rev: 127922 / Revision: 129046 | Last Changed Date: 2017-03-31 13:34:58 -0400 (Fri, 31 Mar 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
toluca2 | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | [ OK ] | OK | |
veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
Summary
Package: flowQB |
Version: 2.3.3 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings flowQB_2.3.3.tar.gz |
StartedAt: 2017-04-23 03:54:57 -0400 (Sun, 23 Apr 2017) |
EndedAt: 2017-04-23 04:09:13 -0400 (Sun, 23 Apr 2017) |
EllapsedTime: 856.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowQB.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings flowQB_2.3.3.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/flowQB.Rcheck’
* using R Under development (unstable) (2017-02-15 r72187)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowQB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowQB’ version ‘2.3.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowQB’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fit_beads 313.549 8.425 337.183
fit_led 14.566 2.508 17.423
qb_from_fits 13.795 2.369 16.596
calc_mean_sd_197 9.018 0.651 9.610
calc_mean_sd_capture_all 6.432 0.580 9.631
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
flowQB.Rcheck/00install.out:
* installing *source* package ‘flowQB’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowQB)
flowQB.Rcheck/flowQB-Ex.timings:
name | user | system | elapsed
|
calc_mean_sd_197 | 9.018 | 0.651 | 9.610 |
|
calc_mean_sd_background | 3.024 | 0.251 | 3.017 |
|
calc_mean_sd_capture | 0.384 | 0.054 | 0.444 |
|
calc_mean_sd_capture_all | 6.432 | 0.580 | 9.631 |
|
calc_mean_sd_duke | 2.913 | 0.204 | 4.130 |
|
find_peak | 0.002 | 0.000 | 0.005 |
|
fit_beads | 313.549 | 8.425 | 337.183 |
|
fit_led | 14.566 | 2.508 | 17.423 |
|
fitted_ellipse_gate | 0.970 | 0.197 | 1.175 |
|
get_results_for_dyes | 2.537 | 0.285 | 2.730 |
|
peak_gate-methods | 0.991 | 0.182 | 1.188 |
|
pick_parameters-methods | 0.677 | 0.147 | 0.824 |
|
qb_from_fits | 13.795 | 2.369 | 16.596 |
|
split_in_two-methods | 0.708 | 0.138 | 0.847 |
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