BioC 3.5: CHECK report for flowQB on malbec2
This page was generated on 2017-08-16 13:14:29 -0400 (Wed, 16 Aug 2017).
flowQB 2.4.0 Josef Spidlen
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/flowQB | Last Changed Rev: 129126 / Revision: 131943 | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] | | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
Summary
Package: flowQB |
Version: 2.4.0 |
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings flowQB_2.4.0.tar.gz |
StartedAt: 2017-08-15 23:03:55 -0400 (Tue, 15 Aug 2017) |
EndedAt: 2017-08-15 23:15:32 -0400 (Tue, 15 Aug 2017) |
EllapsedTime: 697.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowQB.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings flowQB_2.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/flowQB.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowQB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowQB’ version ‘2.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowQB’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fit_beads 279.476 5.364 285.049
fit_led 11.964 0.296 14.168
qb_from_fits 10.264 0.292 10.565
calc_mean_sd_197 7.260 0.456 8.037
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
flowQB.Rcheck/00install.out:
* installing *source* package ‘flowQB’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowQB)
flowQB.Rcheck/flowQB-Ex.timings:
name | user | system | elapsed
|
calc_mean_sd_197 | 7.260 | 0.456 | 8.037 |
|
calc_mean_sd_background | 2.544 | 0.084 | 2.082 |
|
calc_mean_sd_capture | 0.316 | 0.028 | 0.373 |
|
calc_mean_sd_capture_all | 4.612 | 0.176 | 4.472 |
|
calc_mean_sd_duke | 2.104 | 0.104 | 1.950 |
|
find_peak | 0.000 | 0.000 | 0.001 |
|
fit_beads | 279.476 | 5.364 | 285.049 |
|
fit_led | 11.964 | 0.296 | 14.168 |
|
fitted_ellipse_gate | 0.440 | 0.144 | 0.581 |
|
get_results_for_dyes | 2.064 | 0.096 | 2.140 |
|
peak_gate-methods | 0.488 | 0.104 | 0.597 |
|
pick_parameters-methods | 0.280 | 0.044 | 0.324 |
|
qb_from_fits | 10.264 | 0.292 | 10.565 |
|
split_in_two-methods | 0.320 | 0.020 | 0.343 |
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