BioC 3.5: CHECK report for flowQB on tokay2
This page was generated on 2017-08-16 13:21:41 -0400 (Wed, 16 Aug 2017).
flowQB 2.4.0 Josef Spidlen
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/flowQB | Last Changed Rev: 129126 / Revision: 131943 | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
Summary
Package: flowQB
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Version: 2.4.0
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Command: rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.4.0.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.4.0.tar.gz
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StartedAt: 2017-08-15 23:46:46 -0400 (Tue, 15 Aug 2017)
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EndedAt: 2017-08-16 00:12:55 -0400 (Wed, 16 Aug 2017)
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EllapsedTime: 1569.3 seconds
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RetCode: 0
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Status: OK
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CheckDir: flowQB.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.4.0.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.4.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/flowQB.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowQB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQB' version '2.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowQB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fit_beads 309.25 9.79 322.36
fit_led 14.55 0.61 19.52
qb_from_fits 12.84 0.12 13.00
calc_mean_sd_197 7.61 0.50 12.47
calc_mean_sd_capture_all 6.43 0.27 8.50
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fit_beads 309.42 12.53 328.36
fit_led 11.92 0.34 12.04
qb_from_fits 10.62 0.26 10.89
calc_mean_sd_197 9.84 0.42 8.59
calc_mean_sd_capture_all 5.27 0.14 5.03
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
flowQB.Rcheck/00install.out:
install for i386
* installing *source* package 'flowQB' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'flowQB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowQB' as flowQB_2.4.0.zip
* DONE (flowQB)
flowQB.Rcheck/examples_i386/flowQB-Ex.timings:
name | user | system | elapsed
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calc_mean_sd_197 | 7.61 | 0.50 | 12.47 |
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calc_mean_sd_background | 2.14 | 0.10 | 2.64 |
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calc_mean_sd_capture | 0.48 | 0.01 | 0.81 |
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calc_mean_sd_capture_all | 6.43 | 0.27 | 8.50 |
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calc_mean_sd_duke | 2.25 | 0.00 | 2.29 |
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find_peak | 0 | 0 | 0 |
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fit_beads | 309.25 | 9.79 | 322.36 |
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fit_led | 14.55 | 0.61 | 19.52 |
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fitted_ellipse_gate | 0.81 | 0.08 | 0.89 |
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get_results_for_dyes | 1.89 | 0.03 | 1.89 |
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peak_gate-methods | 0.75 | 0.11 | 0.86 |
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pick_parameters-methods | 0.81 | 0.08 | 0.89 |
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qb_from_fits | 12.84 | 0.12 | 13.00 |
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split_in_two-methods | 0.64 | 0.04 | 0.67 |
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flowQB.Rcheck/examples_x64/flowQB-Ex.timings:
name | user | system | elapsed
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calc_mean_sd_197 | 9.84 | 0.42 | 8.59 |
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calc_mean_sd_background | 3.01 | 0.08 | 2.10 |
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calc_mean_sd_capture | 0.39 | 0.02 | 0.41 |
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calc_mean_sd_capture_all | 5.27 | 0.14 | 5.03 |
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calc_mean_sd_duke | 2.39 | 0.06 | 2.11 |
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find_peak | 0 | 0 | 0 |
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fit_beads | 309.42 | 12.53 | 328.36 |
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fit_led | 11.92 | 0.34 | 12.04 |
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fitted_ellipse_gate | 0.83 | 0.13 | 0.96 |
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get_results_for_dyes | 2.03 | 0.06 | 1.90 |
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peak_gate-methods | 0.63 | 0.03 | 0.66 |
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pick_parameters-methods | 0.63 | 0.07 | 0.69 |
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qb_from_fits | 10.62 | 0.26 | 10.89 |
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split_in_two-methods | 0.42 | 0.03 | 0.46 |
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