BioC 3.5: CHECK report for flowQB on tokay2

Package: flowQB

Version: 2.4.0

Command: rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.4.0.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.4.0.tar.gz

StartedAt: 2017-08-15 23:46:46 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-16 00:12:55 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 1569.3 seconds

RetCode: 0

Status:  OK

CheckDir: flowQB.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf flowQB.buildbin-libdir flowQB.Rcheck && mkdir flowQB.buildbin-libdir flowQB.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowQB.buildbin-libdir flowQB_2.4.0.tar.gz >flowQB.Rcheck\00install.out 2>&1 && cp flowQB.Rcheck\00install.out flowQB-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=flowQB.buildbin-libdir --install="check:flowQB-install.out" --force-multiarch --no-vignettes --timings flowQB_2.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/flowQB.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowQB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowQB' version '2.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowQB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
fit_beads                309.25   9.79  322.36
fit_led                   14.55   0.61   19.52
qb_from_fits              12.84   0.12   13.00
calc_mean_sd_197           7.61   0.50   12.47
calc_mean_sd_capture_all   6.43   0.27    8.50
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
fit_beads                309.42  12.53  328.36
fit_led                   11.92   0.34   12.04
qb_from_fits              10.62   0.26   10.89
calc_mean_sd_197           9.84   0.42    8.59
calc_mean_sd_capture_all   5.27   0.14    5.03
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'flowQB' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowQB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowQB' as flowQB_2.4.0.zip
* DONE (flowQB)

name	user	system	elapsed
calc_mean_sd_197	7.61	0.50	12.47
calc_mean_sd_background	2.14	0.10	2.64
calc_mean_sd_capture	0.48	0.01	0.81
calc_mean_sd_capture_all	6.43	0.27	8.50
calc_mean_sd_duke	2.25	0.00	2.29
find_peak	0	0	0
fit_beads	309.25	9.79	322.36
fit_led	14.55	0.61	19.52
fitted_ellipse_gate	0.81	0.08	0.89
get_results_for_dyes	1.89	0.03	1.89
peak_gate-methods	0.75	0.11	0.86
pick_parameters-methods	0.81	0.08	0.89
qb_from_fits	12.84	0.12	13.00
split_in_two-methods	0.64	0.04	0.67

name	user	system	elapsed
calc_mean_sd_197	9.84	0.42	8.59
calc_mean_sd_background	3.01	0.08	2.10
calc_mean_sd_capture	0.39	0.02	0.41
calc_mean_sd_capture_all	5.27	0.14	5.03
calc_mean_sd_duke	2.39	0.06	2.11
find_peak	0	0	0
fit_beads	309.42	12.53	328.36
fit_led	11.92	0.34	12.04
fitted_ellipse_gate	0.83	0.13	0.96
get_results_for_dyes	2.03	0.06	1.90
peak_gate-methods	0.63	0.03	0.66
pick_parameters-methods	0.63	0.07	0.69
qb_from_fits	10.62	0.26	10.89
split_in_two-methods	0.42	0.03	0.46