Mustafa Erhan Ozer
| Snapshot Date: 2025-03-24 13:40 -0400 (Mon, 24 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-25 11:43 -0400 (Tue, 25 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4782 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4552 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4581 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4533 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4463 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2115/2315 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-03-25 06:45:15 -0400 (Tue, 25 Mar 2025) |
| EndedAt: 2025-03-25 06:51:26 -0400 (Tue, 25 Mar 2025) |
| EllapsedTime: 371.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck'
* using R Under development (unstable) (2025-03-01 r87860 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.7.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 197131,1281,3606,2677,5618,23163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2629,266,7040,2243,3099,4705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2243,8678,1806,2653,3554,90865
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2516,656,5723,3077,3440,795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,216,118,5901,11019,5631
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79585,5277,3930,4548,4232,7350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 191,28958,9630,2266,471,7412
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,23304,4719,185,1757,6198
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7019,51082,79572,518,4864,92483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6374,3759,5126,1524,2694,728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22845,79731,54704,64432,338821,285848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10537,5250,3295,3559,6514,859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,25821,51649,361,4040,2790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3643,7225,1543,2588,5105,7172
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6374,6794,10157,153642,6566,54344
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1589,7289,55768,51611,9180,201595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 796,4728,5562,6721,779,5364
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2787,1906,26354,10643,57505,54106
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 537,5625,2052,9526,1312,4688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132158,3440,9572,7038,3479,9076
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8842,2348,6505,7471,1956,55503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8862,518,1230,3813,2593,51099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5562,1337,3240,2280,9429,79053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5369,84340,2835,158,64131,3920
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1646,2712,84239,11096,2495,4695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5713,6834,2184,130120,5515,3291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3062,57048,4338,92483,6927,440503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5230,1514,23054,3087,149775,2653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10891,2720,51081,7840,3552,1493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83854,4552,3930,4723,27089,84275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4306,11222,51649,6929,29926,629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10560,5189,4879,80207,435,178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3596,1555,51478,5330,5191,55572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53345,23395,5241,2063,479,3569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60684,3703,4160,3077,138050,131669
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 476,11232,1909,4718,51555,6492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406913,6999,155,10891,1075,2247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84274,9868,345,476,8743,54205
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3558,388962,7385,341,133522,3172
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6579,5327,170302,9575,2673,5741
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5080,23654,84334,54931,2113,1806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57678,9498,5369,11132,4118,3938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407024,3945,51021,3899,6536,6390
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1595,5345,6352,6934,1371,79602
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5970,6319,490,6786,10753,79133
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,5190,54802,83854,8799,5590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10269,1571,10938,6901,427,9414
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 129787,4700,4714,11019,5195,2155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 175,796,60386,7030,3598,6464
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1028,23474,3991,1027,867,1718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8517,5239,54578,5019,7355,2949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79644,3685,5122,10724,10102,9919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,959,3934,23395,118,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79053,1672,3709,2653,153,51611
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2673,2638,23556,5723,6401,212
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29929,9512,8743,3074,1268,7098
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 191,132001,5588,26191,583,6521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3700,1471,694,3667,268,308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1728,388,285126,389692,3990,5315
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7352,5346,2847,4705,844,111
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5167,35,5743,84275,5588,3952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2937,4723,5654,51316,55818,1801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7942,217,1277,2947,1244,1471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2820,6748,5346,2949,857,57678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81570,23291,8942,57678,3813,1514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23600,38,51099,29843,2949,111
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 858,587,1807,55503,572,1282
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51085,5184,2194,364,1497,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54658,87178,64241,56923,4609,5925
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 776,2581,2788,7421,344905,4285
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6811,58528,29929,2243,3119,8694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5506,4089,590,2063,5274,79633
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4288,10157,1363,23411,5468,55818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2119,29078,56259,4973,7384,2266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10226,5167,9559,55818,6389,23411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 58528,1584,57511,5160,2876,64432
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,10991,1769,84447,7352,2740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4779,940,3373,79633,5241,51458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3636,8309,1801,7421,7035,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,3293,3658,7515,567,79053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7381,599,54809,407024,150379,8651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4982,10062,2055,100131801,5160,10195
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2787,3483,10013,57505,6934,7350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124454,407006,50484,54549,493,3991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10382,445,3099,929,886,7421
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79661,5274,779,4853,4015,2203
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338,516,3627,5467,5068,22901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,391051,2159,9409,10229,9663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 929,7498,116519,64116,3357,51144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83985,2890,4726,1789,2539,463
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1327,4744,55699,5080,9512,80270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6462,790955,7345,384,5594,54567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6536,4358,56606,5563,10226,7942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9180,5091,4256,149461,6748,291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4035,509,10524,1371,3576,1340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3673,57104,50506,6338,655,79572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2305,2643,11254,26227,410,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79944,9997,6183,4668,133522,2787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55967,391051,3357,406937,92935,3717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,5770,2806,4719,10991,84947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 570,79587,10020,8567,55970,5442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,1282,2348,100128525,10020,655
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54577,5288,2740,590,23543,3240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1348,8639,2309,29928,5799,492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7386,779,6890,10383,4790,189
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 793,253943,8842,3920,255308,330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 652,2305,9919,1606,3562,3087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3081,7220,1586,4286,3480,6929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 145264,1812,5499,3948,23062,5122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54331,5350,54549,2110,3948,54578
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3717,54578,3978,3066,5660,153642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51738,56606,3559,632,796,2720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2694,162417,7097,6236,79585,3291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22845,2592,229,2888,8642,23062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 205327,2588,5291,85446,5563,90865
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
76.93 2.00 79.34
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.70 | 0.05 | 1.61 | |