Mustafa Erhan Ozer
| Snapshot Date: 2025-03-24 13:40 -0400 (Mon, 24 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-25 11:46 -0400 (Tue, 25 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4782 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4552 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4581 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4533 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4463 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2115/2315 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-03-24 21:46:26 -0400 (Mon, 24 Mar 2025) |
| EndedAt: 2025-03-24 21:48:23 -0400 (Mon, 24 Mar 2025) |
| EllapsedTime: 116.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 4705,80201,53632,427,1956,5919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10243,1968,5276,486,28958,4118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4337,2745,54802,54539,51052,5826
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26003,1499,9575,79587,2592,2790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160287,6391,2793,5364,28957,1807
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3557,11231,1208,3507,4700,6531
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23062,2876,7248,2678,6906,6999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1345,255231,8694,84706,7019,493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1588,90480,54931,11131,3565,5367
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10128,4758,406913,3158,10157,7077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2767,10965,3684,32,4153,23654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51094,3329,64689,6383,3490,2247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55572,7431,653,1605,126328,5581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3990,79585,5321,836,84706,2834
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,401,23411,9919,23389,1072
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5054,6564,79585,33,150,5194
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2348,51083,51092,5727,1594,3418
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2919,3929,5213,9507,8877,10116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4143,407024,2517,2875,111240474,2100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2030,445,10128,1392,1230,2099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 212,8799,10135,6389,3425,5901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2053,142,22933,2328,3627,137682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6403,339,84649,7252,51176,325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4319,1608,3460,2180,3992,6906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4726,2645,7035,5176,6648,6774
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790955,1355,104,2643,5213,5286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3557,3638,54968,55526,5507,189
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23516,124976,9365,5078,3958,5581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1499,291,268,6403,145264,10157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 19,7494,6774,51103,5194,10724
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,27247,149775,4285,5727,10382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1910,51167,54344,407004,2146,3553
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53346,23409,1345,3553,410,1232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23163,1595,10062,9572,79934,5468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4126,7248,3779,5315,2539,3418
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,18,63874,7252,7355,1499
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5571,359,51117,4609,3813,2688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5447,83439,241,7384,551,5241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51181,6263,1361,5194,23543,5211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,54578,3117,858,55644,7037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6716,2542,84340,6505,55967,64919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1230,100128525,5723,4988,90480,3995
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5836,490,1337,1807,50506,57570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 941,5321,28976,89866,8743,207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1649,90480,5053,100529063,2593,824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6401,51458,23304,3708,3081,105372280
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 411,92667,80267,729238,5364,3645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1543,1277,2937,3099,84317,5826
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5741,9380,5702,5743,11136,5728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1497,155,4855,517,10382,2638
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6389,1491,10000,54798,81033,111240474
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10128,2158,4968,3490,3643,2590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 348,9429,7078,84947,4311,9663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6788,53346,2632,406934,55753,9971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80347,133,84334,5770,6261,255738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 440503,6714,10875,3242,8813,1801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,5291,1582,2591,56919,825
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8799,2788,389692,462,10316,23400
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6775,5286,92609,6898,1672,7450
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 131118,60386,26191,590,10938,4719
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5805,51081,9076,6392,6609,7077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 355,325,1186,57048,2487,6786
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54915,836,5571,427,440138,3242
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,4713,10221,1369,7284,2119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6548,58528,6566,51024,6582,9498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1201,5184,3356,2784,51649,7297
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2752,2739,9512,9415,7040,1471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84705,11222,3113,221935,5313,694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29929,145264,7391,4609,7252,7388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22796,26060,793,23395,2712,3767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9498,7284,10423,405,7407,8648
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6789,479,6383,151306,80224,48
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10642,8195,60528,3358,23590,5730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1435,2200,3490,3416,23291,3658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90624,200186,2314,1644,56302,285848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 134,5069,207,1737,11255,3098
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,27329,285,4720,1268,3482
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 34,790,5723,105372280,56999,4860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1524,11213,2593,3658,55858,4000
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4967,90480,3033,129787,27329,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3627,1435,4723,1468,2587,10991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26175,5291,2944,23600,7381,948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283120,8504,7018,3034,7388,6182
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 643181,2110,1149,5837,3312,85479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2641,407021,7915,2903,5122,10935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 410,10965,5740,125170,3779,8504
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7480,5105,32,3291,203859,6774
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5592,4694,5409,2720,10999,388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1893,3795,130120,1327,55186,411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56052,2310,6569,6901,2690,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7431,3783,10667,51649,3440,6748
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2517,5824,7172,5787,26060,5799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25828,4723,4729,655,79133,5468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8854,11096,169792,7381,53346,216
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2767,125170,3952,2642,29929,5276
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,5288,9512,5962,57511,3636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388,5515,6678,3938,958,2778
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6934,1075,5193,440503,1203,134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5274,10135,55768,2155,2538,9969
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92483,1717,2034,581,54704,10599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23062,4828,387787,23274,7038,1468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 665,55037,3351,94235,138050,3795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3767,3145,4319,3101,51117,5745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7466,410,84705,9575,84557,3117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3700,54578,4318,7172,64241,3357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50943,10243,2786,91869,6492,6789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22845,57817,2776,5507,5264,125170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55005,5350,4299,4351,6789,5799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387082,54931,11255,5250,629,91869
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1443,56848,1718,23516,1812,2592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3060,3250,11019,11132,948,3295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4889,5644,23389,79585,92935,325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2328,1678,10935,51117,2693,4860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1893,3663,55902,92609,132,644096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7289,35,335,57192,2053,133396
--> return NULL...
2025-03-24 21:48:20.000 R[78018:799212216] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
25.809 0.414 26.669
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.324 | 0.012 | 3.269 | |