Mustafa Erhan Ozer
| Snapshot Date: 2025-03-23 13:40 -0400 (Sun, 23 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-24 11:48 -0400 (Mon, 24 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4779 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4550 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4578 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4530 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4461 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2113/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-03-24 11:36:55 -0000 (Mon, 24 Mar 2025) |
| EndedAt: 2025-03-24 11:44:17 -0000 (Mon, 24 Mar 2025) |
| EllapsedTime: 441.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 434,3708,1621,2798,3066,1801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4728,4547,3643,2517,859,2055
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4842,80270,5660,3929,7350,55788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10062,4137,6492,5350,7274,92609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6556,85365,4282,23236,5370,94235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283120,8471,6571,79731,10000,64087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 249,10643,4715,5588,293,7386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8854,9672,411,1992,5743,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4729,2157,1234,4319,1537,60684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5019,8932,51079,54805,27329,23753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 265,3708,5122,4720,3170,5789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3784,130120,5276,1558,4337,85446
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5190,432369,63892,55788,563,844
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 567,5409,285126,6716,1232,31
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55034,2787,7376,3416,9698,54658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26521,65985,2992,5830,5265,60386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 846,9380,1909,8560,10226,8743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84947,55768,84705,2645,3284,5971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1608,5618,336,10457,18,112817
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3339,3929,2992,374291,9374,4137
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152926,23389,627,3309,268,3658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4312,28957,7056,7915,56938,23410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56997,26354,4338,2593,3949,4159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 316,3939,3101,5261,729238,130120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55340,6908,11019,1514,1607,4968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255231,81570,2157,3440,5581,185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1497,5660,107075310,1889,55037,79944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 942,116085,161247,8651,4609,1717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5091,4125,488,56259,2697,6901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3077,5213,694,4338,1798,6948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57380,8202,445,2776,407008,31
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,868,3703,84947,23400,1200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3081,84701,1497,2888,28951,177
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7248,574447,4697,7167,8714,8841
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80270,64241,120227,488,3170,4855
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284958,383,593,111,6888,3779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 617,197,410,5837,63892,114814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1369,7941,942,1022,6786,411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65080,1185,8431,145264,4700,5562
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85569,2495,191,4720,353,6647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,3030,4313,3596,291,1591
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5781,6492,929,2948,134,3949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54344,4842,55343,2934,795,2053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,2055,22978,11231,5740,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22845,8743,3119,3290,104,2642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80347,2908,1594,22978,9779,8471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10643,7325,3417,3250,285,1356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1606,26354,4684,567,7471,64432
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5447,57761,5277,4288,4694,55532
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3479,57570,170302,51081,2896,4125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2778,6476,4697,23556,5919,34
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1956,4149,493753,5967,410,5805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2542,7391,120227,2146,4889,80224
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5256,4143,655,212,85365,4713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4790,3710,940,5579,3552,57048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54576,2693,6786,8813,6517,5799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10642,284958,1588,19,493753,4668
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3158,4311,8642,7428,9971,292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55670,183,8862,10379,9572,1992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,6009,1352,212,5243,79736
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2908,51601,2118,1789,345,7035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,2990,2161,1716,54704,558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130120,6908,4137,10423,54552,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5291,3930,2791,150,79661,1559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2638,5261,153642,10102,2588,3995
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1757,2271,344905,840,4351,25974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2762,18,4502,3081,28957,2593
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10102,3483,8877,291,6248,3651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55034,1595,5009,5288,4700,253559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5826,51241,11035,1629,6602,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51099,54704,4159,27089,406,93587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150379,55034,7347,7498,55065,3485
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2641,3373,133,9332,1843,4889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6927,54205,2155,291,476,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3309,2628,158,3357,6476,2673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 652,1374,85479,60684,8694,28957
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,57107,410,3060,2790,9382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,6888,8473,125988,2820,56302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56259,7916,664,216,796,253943
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,28951,5277,10560,8651,3645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65993,56945,5091,65985,9377,308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5256,169792,54915,54210,5950,133522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1201,56848,23474,10295,3939,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2697,5579,583,2571,51316,8803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116931,7915,1544,51604,383,5579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3308,3087,89874,4282,285,7132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2847,3329,2266,55065,3283,1757
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3710,7407,3117,84447,3708,185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10316,3995,539,152078,10094,51649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23516,4886,91869,6374,55750,4864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29881,29960,53346,9021,51181,653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2864,7292,5618,356,10938,1621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2875,518,5071,53905,54575,2694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28958,1401,60386,7076,64788,100128525
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80224,5313,2303,55670,1910,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1605,1591,1471,55532,1019,9498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2244,6515,51082,57678,2767,7941
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7381,1401,120227,5972,4023,25974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 477,3159,31,55343,339,4282
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2539,9056,43,509,81704,3170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56923,4803,401,940,10062,54539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5588,5728,24147,55768,1340,53335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9420,5468,6772,3312,85569,55343
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51021,1491,4286,1675,4860,4915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7295,54805,51441,4779,50674,367
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3115,5860,23054,2739,10616,7248
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84317,55340,56302,1401,91949,9365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51085,6721,4040,5515,84317,2984
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388,388585,1594,5069,181,1027
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79572,1363,22901,79587,1468,1435
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 729230,2784,2244,3308,2305,3954
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10560,2109,253943,9409,5162,51660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 779,942,84706,708,23410,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4854,3293,1277,2678,5428,84572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1950,952,51128,9572,811,116085
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
137.605 2.377 140.896
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.973 | 0.067 | 1.863 | |