Mustafa Erhan Ozer
| Snapshot Date: 2025-03-24 13:40 -0400 (Mon, 24 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-25 11:41 -0400 (Tue, 25 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4782 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4552 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4581 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4533 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4463 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2115/2315 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-03-25 02:56:09 -0400 (Tue, 25 Mar 2025) |
| EndedAt: 2025-03-25 03:01:00 -0400 (Tue, 25 Mar 2025) |
| EllapsedTime: 291.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-03-13 r87965)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 30061,10226,5009,138050,51611,8694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8877,23556,9054,655,7054,129787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1757,3953,868,79602,79661,138050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5919,51004,6775,54802,94235,4015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124454,7841,5428,7037,7057,84447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83884,26503,80070,583,6389,7466
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84706,22820,491,79731,728,200539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5468,1591,55572,9095,23530,4713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8517,9507,27429,27235,9698,1175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84062,8050,6262,285362,50943,4720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3082,6464,5105,5447,5257,80267
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,3240,11096,199,9698,54600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200186,1645,8818,2820,2745,203068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3507,406938,5257,6339,6948,558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8803,94235,55343,200810,2642,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8471,1859,2710,84300,55037,125988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5257,1786,23409,407045,51085,9131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 440138,1351,3929,2161,2310,4744
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,6789,89874,4543,212,7276
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 650,1281,63931,10135,100130015,4247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2717,3995,133,28958,63874,2984
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51021,253943,3483,55034,8648,199
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 158,6199,56997,706,540,92483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54210,3663,79587,6342,5095,120227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8802,23753,2785,6934,514,4137
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1581,51611,2949,212,2146,115286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2864,51092,7391,6374,5211,2791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1080,5184,57215,54567,10128,4594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130120,22933,493,1443,8517,8675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7407,4015,1329,158,1340,54567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7037,197,116519,1352,6789,686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5306,7409,189,5654,4843,3174
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,1468,847,84340,114814,54968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5189,6517,57818,84947,54567,3988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60386,570,197131,54577,1559,2690
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5207,5770,3293,6897,4232,2937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255308,51128,2904,7025,5257,3708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4015,56259,1893,6786,7915,5409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 210,8877,3030,6794,941,387082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5071,407009,3157,2717,169792,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7018,6439,2876,55902,539,23409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 52,284958,10295,3663,8309,4598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8714,7099,3670,2053,6387,2677
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1968,3123,2161,7345,7351,125988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6387,56623,55270,4886,406913,53346
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10000,718,4306,6382,2571,8813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6602,2908,84334,708,1803,6928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150,8942,4976,5105,64788,1769
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1906,8517,1910,3460,3162,57761
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7054,5727,10382,1022,2762,1584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3081,490,4547,18,27344,2805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790955,6602,268,2591,7297,3033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80270,65080,3684,653509,2876,55753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 405,266,10999,2244,5078,7422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23274,2593,51441,1728,5080,84947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,5270,6522,7040,169026,54331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4669,7407,2592,80224,6356,8813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79736,155,10352,1361,51204,9945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5971,5315,842,572,3938,9630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3949,10857,596,23516,6678,4851
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3490,5193,23410,57620,23411,10965
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3673,5207,4285,7077,6521,3073
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51458,23400,338328,50943,177,10159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 93587,64240,729230,28958,153642,9131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255738,3081,2597,26291,170302,3630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6609,4889,60,5579,200186,2984
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,493753,1803,292,10560,84061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9672,10059,51117,50674,25813,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1558,3358,3162,22852,387082,5501
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56919,23543,405,54476,3709,1606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6354,493753,5161,54915,686,2180
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64689,3074,4968,801,51738,10686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3145,7320,2235,3460,148979,3479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83884,5264,5919,26060,2169,5167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,2731,83884,1116,10524,1373
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9607,28958,51441,32,5288,6932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388962,53905,10269,1182,58528,5092
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5293,801,50506,9332,2710,9420
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2348,1607,1351,7350,7100,100506742
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8567,3081,476,2936,6182,55526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9374,3875,133,7351,6890,1769
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,268,23543,948,2952,4015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253943,3953,1028,2099,1802,1571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1859,2592,358,7048,10102,3638
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 558,1678,6616,5830,55034,30061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5498,51478,56848,205327,388743,4311
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4697,440138,5293,8932,5105,2936
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5824,7076,858,9919,3382,486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7428,169792,4744,1401,178,2645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6811,54902,4925,344,6521,9560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3033,52,3557,6392,84833,4851
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5625,51024,4716,54552,23054,5327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29881,5972,2194,2146,5295,285362
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25839,6609,1340,2587,5372,22852
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7252,574447,150,3939,55503,462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51144,2641,22820,2101,1636,10686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1201,83693,819,4547,836,1436
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,85569,239,652,2305,1956
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3991,9377,5798,1801,3482,2581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 344905,123263,10379,8772,2108,107075310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4889,2335,407008,51555,3551,2936
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3091,348,4719,58528,3710,100529063
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51103,54552,5428,432369,91647,80331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5744,4089,9868,8803,7297,3117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200539,654,2690,5625,84062,3034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 293,2673,23411,6464,51608,107075310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2166,376497,4860,23530,640,9241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3383,8743,26517,2260,156,477
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,56919,5078,2590,55283,694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22868,22845,6579,5274,85365,821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6513,1489,57818,55283,123099,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406938,116150,54798,9698,330,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7035,84274,4982,9559,80270,1230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,26003,10116,2495,5702,5538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 941,55902,56848,203,5052,11035
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
65.652 1.742 67.504
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.727 | 0.047 | 0.892 | |