BioC 3.1: CHECK report for Streamer on zin2

Package: Streamer

Version: 1.14.0

Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings Streamer_1.14.0.tar.gz

StartedAt: 2015-10-09 05:53:36 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 05:54:07 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 30.5 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: Streamer.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings Streamer_1.14.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.1-bioc/meat/Streamer.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Streamer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Streamer’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Streamer’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' call not declared from: ‘parallel’
'library' or 'require' calls in package code:
  ‘Rgraphviz’ ‘parallel’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported objects imported by ':::' calls:
  ‘parallel:::mckill’ ‘parallel:::sendMaster’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [5s/5s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘unit_tests.R’ [2s/2s]
 [2s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.1-bioc/meat/Streamer.Rcheck/00check.log’
for details.

* installing *source* package ‘Streamer’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c R_init_Streamer.c -o R_init_Streamer.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c raw_input.c -o raw_input.o
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.1-bioc/R/lib -L/usr/local/lib -o Streamer.so R_init_Streamer.o raw_input.o -L/home/biocbuild/bbs-3.1-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.1-bioc/meat/Streamer.Rcheck/Streamer/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Streamer)

name	user	system	elapsed
ConnectionProducer-classes	0.292	0.004	0.306
Consumer-class	0.002	0.000	0.002
DAGTeam-class	0.224	0.000	0.223
Downsample-class	0.000	0.000	0.001
FunctionProducerConsumer-classes	0.552	0.000	0.551
ParallelParam-classes	0.003	0.000	0.003
Producer-class	0.016	0.000	0.017
RawInput-class	0.01	0.00	0.01
Reducer-class	1.089	0.054	1.123
Seq-class	0.003	0.004	0.003
Stream-class	0.033	0.000	0.032
Streamer-package	0.033	0.004	0.037
Team-class	2.030	0.106	2.106
Utility-classes	0.001	0.000	0.001
reset	0.000	0.000	0.001
status	0	0	0
yield	0	0	0