Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-06 11:38 -0400 (Sat, 06 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 963/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.11.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.11.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings HPiP_1.11.0.tar.gz |
StartedAt: 2024-07-05 23:43:20 -0400 (Fri, 05 Jul 2024) |
EndedAt: 2024-07-05 23:56:57 -0400 (Fri, 05 Jul 2024) |
EllapsedTime: 817.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings HPiP_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 36.110 0.904 37.015 FSmethod 34.808 0.583 35.393 corr_plot 34.761 0.439 35.202 pred_ensembel 13.496 0.592 10.869 enrichfindP 0.491 0.060 9.361 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 95.506954 iter 10 value 86.509060 final value 86.503249 converged Fitting Repeat 2 # weights: 103 initial value 110.945307 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 98.573938 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 97.009107 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.040021 final value 94.275362 converged Fitting Repeat 1 # weights: 305 initial value 120.103590 iter 10 value 93.567525 iter 10 value 93.567525 iter 10 value 93.567525 final value 93.567525 converged Fitting Repeat 2 # weights: 305 initial value 95.064348 iter 10 value 94.072944 final value 93.567525 converged Fitting Repeat 3 # weights: 305 initial value 110.970470 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 109.244987 iter 10 value 94.479530 iter 20 value 86.652815 iter 30 value 86.126147 final value 86.125918 converged Fitting Repeat 5 # weights: 305 initial value 96.219095 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 102.530394 iter 10 value 94.275399 final value 94.275362 converged Fitting Repeat 2 # weights: 507 initial value 107.716964 iter 10 value 93.244323 iter 20 value 93.199245 final value 93.198847 converged Fitting Repeat 3 # weights: 507 initial value 132.144989 iter 10 value 94.275362 iter 10 value 94.275362 iter 10 value 94.275362 final value 94.275362 converged Fitting Repeat 4 # weights: 507 initial value 97.279429 iter 10 value 89.222658 iter 20 value 85.910666 iter 30 value 85.885725 final value 85.885558 converged Fitting Repeat 5 # weights: 507 initial value 113.474805 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 102.981918 iter 10 value 94.552037 iter 20 value 94.492604 iter 30 value 94.486438 iter 40 value 94.123521 iter 50 value 93.906911 iter 60 value 85.932586 iter 70 value 85.600753 iter 80 value 85.457751 iter 90 value 85.137205 iter 100 value 84.071511 final value 84.071511 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 104.946088 iter 10 value 93.628892 iter 20 value 88.242315 iter 30 value 86.074832 iter 40 value 84.419066 iter 50 value 84.316476 iter 60 value 82.841858 iter 70 value 82.537597 iter 80 value 82.519564 iter 90 value 82.480861 iter 100 value 82.348394 final value 82.348394 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 99.956233 iter 10 value 94.484158 iter 20 value 94.129992 iter 30 value 94.115154 iter 40 value 94.111706 iter 50 value 93.088635 iter 60 value 85.897807 iter 70 value 85.305237 iter 80 value 84.974378 iter 90 value 84.631057 iter 100 value 84.151948 final value 84.151948 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 102.574360 iter 10 value 94.334036 iter 20 value 90.365211 iter 30 value 88.548525 iter 40 value 88.006693 iter 50 value 84.481065 iter 60 value 83.755902 iter 70 value 83.479893 iter 80 value 82.786833 iter 90 value 82.432318 iter 100 value 82.336216 final value 82.336216 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 118.265414 iter 10 value 94.486565 iter 20 value 94.401558 iter 30 value 93.368717 iter 40 value 84.813370 iter 50 value 84.261217 iter 60 value 83.883686 iter 70 value 83.097755 iter 80 value 82.712590 final value 82.706822 converged Fitting Repeat 1 # weights: 305 initial value 116.823353 iter 10 value 94.511947 iter 20 value 88.500426 iter 30 value 85.522512 iter 40 value 85.247624 iter 50 value 83.529977 iter 60 value 82.752983 iter 70 value 81.102437 iter 80 value 80.917273 iter 90 value 80.757941 iter 100 value 80.579208 final value 80.579208 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.142656 iter 10 value 91.951095 iter 20 value 87.210587 iter 30 value 85.590447 iter 40 value 85.013144 iter 50 value 84.440862 iter 60 value 83.454839 iter 70 value 82.462731 iter 80 value 82.315733 iter 90 value 81.628429 iter 100 value 81.469175 final value 81.469175 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.687893 iter 10 value 94.488786 iter 20 value 84.530307 iter 30 value 83.512136 iter 40 value 83.132668 iter 50 value 82.906722 iter 60 value 82.002057 iter 70 value 81.820511 iter 80 value 81.681021 iter 90 value 81.624884 iter 100 value 81.594309 final value 81.594309 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 112.801527 iter 10 value 94.380105 iter 20 value 86.917664 iter 30 value 84.970873 iter 40 value 82.974550 iter 50 value 82.757045 iter 60 value 82.508019 iter 70 value 82.479690 iter 80 value 82.115500 iter 90 value 81.383883 iter 100 value 81.232210 final value 81.232210 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.758218 iter 10 value 94.438993 iter 20 value 90.811718 iter 30 value 88.951203 iter 40 value 86.032203 iter 50 value 84.020427 iter 60 value 83.437915 iter 70 value 82.902867 iter 80 value 81.694685 iter 90 value 81.162280 iter 100 value 81.061338 final value 81.061338 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 144.568550 iter 10 value 96.567812 iter 20 value 92.885808 iter 30 value 85.883861 iter 40 value 85.224417 iter 50 value 84.499259 iter 60 value 83.683251 iter 70 value 82.668521 iter 80 value 82.478603 iter 90 value 82.440808 iter 100 value 82.167184 final value 82.167184 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.276219 iter 10 value 92.985130 iter 20 value 86.015094 iter 30 value 84.334924 iter 40 value 84.076076 iter 50 value 82.250463 iter 60 value 81.688493 iter 70 value 81.228070 iter 80 value 80.998659 iter 90 value 80.813472 iter 100 value 80.736493 final value 80.736493 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 112.011537 iter 10 value 94.694084 iter 20 value 90.532064 iter 30 value 83.836577 iter 40 value 81.604339 iter 50 value 81.343674 iter 60 value 81.261382 iter 70 value 81.203765 iter 80 value 81.136709 iter 90 value 80.900443 iter 100 value 80.805433 final value 80.805433 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 106.783930 iter 10 value 94.768808 iter 20 value 91.900826 iter 30 value 88.660676 iter 40 value 84.078070 iter 50 value 83.877364 iter 60 value 83.574576 iter 70 value 82.978059 iter 80 value 82.892556 iter 90 value 82.356053 iter 100 value 81.531300 final value 81.531300 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 114.256775 iter 10 value 93.954675 iter 20 value 83.184877 iter 30 value 82.370337 iter 40 value 82.063109 iter 50 value 82.004346 iter 60 value 81.731572 iter 70 value 81.070867 iter 80 value 80.643372 iter 90 value 80.525678 iter 100 value 80.445626 final value 80.445626 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 113.621614 final value 94.485764 converged Fitting Repeat 2 # weights: 103 initial value 107.231142 final value 94.485714 converged Fitting Repeat 3 # weights: 103 initial value 94.537874 final value 94.486064 converged Fitting Repeat 4 # weights: 103 initial value 108.828744 iter 10 value 94.485950 iter 20 value 94.484246 final value 94.484231 converged Fitting Repeat 5 # weights: 103 initial value 98.478195 final value 94.485835 converged Fitting Repeat 1 # weights: 305 initial value 106.335043 iter 10 value 94.489610 iter 20 value 94.467163 iter 30 value 92.742899 iter 40 value 91.778314 final value 91.777920 converged Fitting Repeat 2 # weights: 305 initial value 124.070782 iter 10 value 94.280596 iter 20 value 94.276830 iter 30 value 94.168983 iter 40 value 84.694715 iter 50 value 84.632694 iter 60 value 84.627845 final value 84.627567 converged Fitting Repeat 3 # weights: 305 initial value 95.277217 iter 10 value 94.488616 iter 20 value 94.484263 iter 30 value 94.055257 iter 40 value 91.328214 iter 50 value 85.957575 iter 60 value 82.505365 iter 70 value 81.816714 iter 80 value 81.766053 final value 81.765950 converged Fitting Repeat 4 # weights: 305 initial value 111.552022 iter 10 value 94.297443 iter 20 value 94.280513 iter 30 value 94.048702 iter 40 value 83.099390 final value 82.884922 converged Fitting Repeat 5 # weights: 305 initial value 97.336060 iter 10 value 94.057788 iter 20 value 94.055059 iter 30 value 87.507218 iter 40 value 86.508777 iter 50 value 86.351937 iter 60 value 86.350364 iter 70 value 85.120907 iter 80 value 82.793219 iter 90 value 82.743092 iter 100 value 82.543508 final value 82.543508 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.259576 iter 10 value 92.604789 iter 20 value 92.285672 iter 30 value 92.271309 iter 40 value 92.071136 iter 50 value 92.056505 iter 60 value 88.738951 iter 70 value 85.695562 iter 80 value 85.600993 iter 90 value 85.595889 iter 100 value 85.591778 final value 85.591778 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 101.160876 iter 10 value 94.283460 iter 20 value 94.278598 iter 30 value 94.277465 iter 40 value 94.047028 iter 50 value 86.531673 iter 60 value 84.545068 iter 70 value 83.536162 iter 80 value 81.899824 iter 90 value 81.338776 iter 100 value 81.055309 final value 81.055309 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 95.234629 iter 10 value 94.283604 iter 20 value 94.277300 iter 30 value 91.424114 iter 40 value 84.503976 iter 50 value 83.074810 iter 60 value 82.890732 iter 70 value 82.886510 final value 82.886502 converged Fitting Repeat 4 # weights: 507 initial value 113.233963 iter 10 value 91.346948 iter 20 value 90.706750 iter 30 value 90.604473 iter 40 value 90.515071 iter 50 value 90.512749 iter 60 value 90.498819 iter 70 value 90.379683 final value 90.379456 converged Fitting Repeat 5 # weights: 507 initial value 98.448790 iter 10 value 94.492567 iter 20 value 94.484759 iter 30 value 94.279445 final value 94.275541 converged Fitting Repeat 1 # weights: 103 initial value 95.047663 final value 94.112573 converged Fitting Repeat 2 # weights: 103 initial value 98.470742 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 108.927084 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 95.592380 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 102.221868 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 96.724251 final value 94.484209 converged Fitting Repeat 2 # weights: 305 initial value 96.063557 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 98.047606 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 96.858493 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 96.431585 final value 94.466823 converged Fitting Repeat 1 # weights: 507 initial value 104.117278 final value 94.288300 converged Fitting Repeat 2 # weights: 507 initial value 108.719836 final value 94.466823 converged Fitting Repeat 3 # weights: 507 initial value 101.163654 final value 94.461538 converged Fitting Repeat 4 # weights: 507 initial value 103.952491 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 97.437733 iter 10 value 94.250353 iter 20 value 94.247471 final value 94.247465 converged Fitting Repeat 1 # weights: 103 initial value 98.892647 iter 10 value 94.472846 iter 20 value 94.110104 iter 30 value 87.786165 iter 40 value 86.409779 iter 50 value 85.775281 iter 60 value 85.043110 iter 70 value 85.017959 iter 80 value 84.997477 final value 84.989804 converged Fitting Repeat 2 # weights: 103 initial value 103.769295 iter 10 value 94.491263 iter 20 value 92.542354 iter 30 value 87.671748 iter 40 value 86.915905 iter 50 value 86.665108 iter 60 value 85.668270 iter 70 value 85.020368 final value 85.017824 converged Fitting Repeat 3 # weights: 103 initial value 100.646810 iter 10 value 94.489527 iter 20 value 94.243941 iter 30 value 94.154893 iter 40 value 94.112704 iter 50 value 93.709869 iter 60 value 88.462150 iter 70 value 87.512513 iter 80 value 84.512158 iter 90 value 83.002586 iter 100 value 82.333051 final value 82.333051 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 104.085811 iter 10 value 94.470540 iter 20 value 89.680434 iter 30 value 86.616850 iter 40 value 84.885609 iter 50 value 84.217377 iter 60 value 83.822267 iter 70 value 82.628510 iter 80 value 82.113745 iter 90 value 82.015362 iter 100 value 81.810554 final value 81.810554 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 97.211551 iter 10 value 94.212421 iter 20 value 86.749539 iter 30 value 86.487459 iter 40 value 85.991721 iter 50 value 85.560908 iter 60 value 85.193966 iter 70 value 85.101202 final value 85.099808 converged Fitting Repeat 1 # weights: 305 initial value 124.758545 iter 10 value 94.527990 iter 20 value 94.216445 iter 30 value 90.915766 iter 40 value 87.934585 iter 50 value 85.651776 iter 60 value 84.135166 iter 70 value 83.190354 iter 80 value 82.390009 iter 90 value 81.310689 iter 100 value 80.834308 final value 80.834308 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 116.795768 iter 10 value 94.644346 iter 20 value 87.472579 iter 30 value 85.967733 iter 40 value 85.482479 iter 50 value 85.379609 iter 60 value 84.770065 iter 70 value 83.444288 iter 80 value 82.918290 iter 90 value 82.198034 iter 100 value 82.023667 final value 82.023667 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 106.202012 iter 10 value 94.686900 iter 20 value 87.683271 iter 30 value 85.485678 iter 40 value 84.636270 iter 50 value 84.300378 iter 60 value 83.108197 iter 70 value 82.481056 iter 80 value 81.406005 iter 90 value 81.030380 iter 100 value 80.899536 final value 80.899536 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.115220 iter 10 value 94.361203 iter 20 value 89.025684 iter 30 value 86.315300 iter 40 value 86.202478 iter 50 value 86.017166 iter 60 value 84.614372 iter 70 value 84.304524 iter 80 value 84.126772 iter 90 value 83.843728 iter 100 value 83.622403 final value 83.622403 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 144.908656 iter 10 value 94.508349 iter 20 value 93.773766 iter 30 value 90.230717 iter 40 value 87.984391 iter 50 value 85.202143 iter 60 value 82.649446 iter 70 value 82.017000 iter 80 value 80.745209 iter 90 value 80.433423 iter 100 value 80.240850 final value 80.240850 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 116.545674 iter 10 value 94.694678 iter 20 value 88.676374 iter 30 value 87.850453 iter 40 value 83.705162 iter 50 value 82.011955 iter 60 value 81.519587 iter 70 value 81.236474 iter 80 value 80.959128 iter 90 value 80.530063 iter 100 value 80.440587 final value 80.440587 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.050919 iter 10 value 94.495936 iter 20 value 91.196273 iter 30 value 87.994370 iter 40 value 83.071831 iter 50 value 81.925693 iter 60 value 81.281605 iter 70 value 80.982662 iter 80 value 80.655233 iter 90 value 80.258558 iter 100 value 80.048924 final value 80.048924 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 111.607538 iter 10 value 94.443370 iter 20 value 88.370299 iter 30 value 87.533154 iter 40 value 86.967922 iter 50 value 86.007366 iter 60 value 82.868475 iter 70 value 81.153202 iter 80 value 80.576545 iter 90 value 80.419449 iter 100 value 80.190133 final value 80.190133 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 120.668687 iter 10 value 94.794626 iter 20 value 93.167308 iter 30 value 85.984805 iter 40 value 84.198195 iter 50 value 83.744680 iter 60 value 82.719254 iter 70 value 81.418056 iter 80 value 80.671385 iter 90 value 80.608094 iter 100 value 80.480407 final value 80.480407 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.427709 iter 10 value 94.618550 iter 20 value 94.531995 iter 30 value 92.329384 iter 40 value 84.377218 iter 50 value 83.374006 iter 60 value 82.535863 iter 70 value 82.212248 iter 80 value 82.146214 iter 90 value 81.846469 iter 100 value 81.750831 final value 81.750831 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.377188 iter 10 value 94.485847 iter 20 value 94.446131 iter 30 value 94.113022 final value 94.112694 converged Fitting Repeat 2 # weights: 103 initial value 95.747320 final value 94.485610 converged Fitting Repeat 3 # weights: 103 initial value 95.297515 final value 94.485817 converged Fitting Repeat 4 # weights: 103 initial value 108.024276 final value 94.486064 converged Fitting Repeat 5 # weights: 103 initial value 104.956071 final value 94.485594 converged Fitting Repeat 1 # weights: 305 initial value 100.018984 iter 10 value 88.488630 iter 20 value 87.618054 iter 30 value 87.305963 iter 40 value 85.785565 iter 50 value 85.285816 iter 60 value 85.283045 iter 70 value 85.262798 final value 85.260742 converged Fitting Repeat 2 # weights: 305 initial value 108.561406 iter 10 value 94.487633 iter 20 value 91.762758 iter 30 value 87.490641 iter 40 value 87.444527 final value 87.444255 converged Fitting Repeat 3 # weights: 305 initial value 100.852448 iter 10 value 94.316763 iter 20 value 94.312356 final value 94.312157 converged Fitting Repeat 4 # weights: 305 initial value 103.667767 iter 10 value 94.488737 iter 20 value 94.449331 iter 30 value 94.101560 iter 40 value 93.521713 iter 50 value 93.290157 iter 60 value 93.051806 iter 70 value 86.089318 iter 80 value 86.023196 final value 86.023112 converged Fitting Repeat 5 # weights: 305 initial value 96.931473 iter 10 value 94.471729 iter 20 value 94.107485 iter 30 value 84.441930 iter 40 value 84.095621 iter 50 value 82.002387 iter 60 value 81.257317 iter 70 value 81.256795 iter 80 value 81.255576 iter 90 value 81.255201 iter 100 value 81.255026 final value 81.255026 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 103.260183 iter 10 value 94.491817 iter 20 value 94.235645 iter 30 value 89.953135 iter 40 value 83.888526 iter 50 value 83.154848 iter 60 value 83.096048 iter 70 value 83.063592 iter 80 value 83.063074 iter 90 value 83.061435 iter 100 value 82.739067 final value 82.739067 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 113.059740 iter 10 value 89.376714 iter 20 value 88.663243 final value 88.661899 converged Fitting Repeat 3 # weights: 507 initial value 106.977644 iter 10 value 94.092829 iter 20 value 94.087066 iter 30 value 90.374978 iter 40 value 88.079449 final value 88.079223 converged Fitting Repeat 4 # weights: 507 initial value 101.628099 iter 10 value 94.491496 iter 20 value 94.483809 iter 30 value 87.920135 iter 40 value 86.309278 iter 50 value 85.910750 iter 60 value 85.909373 iter 60 value 85.909373 iter 60 value 85.909373 final value 85.909373 converged Fitting Repeat 5 # weights: 507 initial value 106.477748 iter 10 value 94.492075 iter 20 value 94.435997 iter 30 value 92.361623 iter 40 value 92.302378 iter 50 value 91.682455 iter 60 value 86.090319 iter 70 value 84.843983 iter 80 value 84.796007 iter 90 value 84.793046 iter 100 value 84.768164 final value 84.768164 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 107.328821 iter 10 value 94.275684 final value 94.275362 converged Fitting Repeat 2 # weights: 103 initial value 109.139898 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 99.968087 final value 94.484210 converged Fitting Repeat 4 # weights: 103 initial value 95.228714 final value 94.484206 converged Fitting Repeat 5 # weights: 103 initial value 102.580686 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 114.543602 final value 94.275362 converged Fitting Repeat 2 # weights: 305 initial value 96.457345 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 94.898868 final value 94.275362 converged Fitting Repeat 4 # weights: 305 initial value 100.717690 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 95.263662 final value 94.275362 converged Fitting Repeat 1 # weights: 507 initial value 96.187141 final value 93.701657 converged Fitting Repeat 2 # weights: 507 initial value 94.863934 iter 10 value 94.303206 final value 94.291317 converged Fitting Repeat 3 # weights: 507 initial value 102.874493 final value 94.275362 converged Fitting Repeat 4 # weights: 507 initial value 108.593935 iter 10 value 92.492049 iter 20 value 84.057347 iter 30 value 81.890941 iter 40 value 81.876159 final value 81.876079 converged Fitting Repeat 5 # weights: 507 initial value 113.738163 final value 94.275362 converged Fitting Repeat 1 # weights: 103 initial value 113.881910 iter 10 value 94.813964 iter 20 value 94.489415 iter 30 value 94.383242 iter 40 value 94.046279 iter 50 value 91.006128 iter 60 value 84.126988 iter 70 value 83.870963 iter 80 value 82.770595 iter 90 value 82.555015 final value 82.554643 converged Fitting Repeat 2 # weights: 103 initial value 97.714603 iter 10 value 94.327196 iter 20 value 87.609522 iter 30 value 84.799505 iter 40 value 83.924290 iter 50 value 82.879918 iter 60 value 82.068453 iter 70 value 82.063841 iter 80 value 82.048073 final value 82.046844 converged Fitting Repeat 3 # weights: 103 initial value 102.961611 iter 10 value 92.076141 iter 20 value 82.482241 iter 30 value 82.110626 iter 40 value 82.073464 final value 82.072339 converged Fitting Repeat 4 # weights: 103 initial value 106.566476 iter 10 value 94.498722 iter 20 value 92.034273 iter 30 value 90.995628 iter 40 value 90.732139 iter 50 value 85.531174 iter 60 value 82.771866 iter 70 value 82.483179 iter 80 value 82.157681 iter 90 value 82.062284 iter 100 value 82.047492 final value 82.047492 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 103.680359 iter 10 value 94.447875 iter 20 value 90.520278 iter 30 value 87.262357 iter 40 value 85.602198 iter 50 value 82.178743 iter 60 value 82.087245 iter 70 value 82.072369 final value 82.072339 converged Fitting Repeat 1 # weights: 305 initial value 101.859401 iter 10 value 94.591359 iter 20 value 92.657571 iter 30 value 87.154208 iter 40 value 86.897487 iter 50 value 85.169024 iter 60 value 82.355911 iter 70 value 81.458543 iter 80 value 80.669874 iter 90 value 78.109931 iter 100 value 77.794873 final value 77.794873 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 113.865669 iter 10 value 93.584317 iter 20 value 87.637520 iter 30 value 85.742549 iter 40 value 82.491292 iter 50 value 81.115571 iter 60 value 80.394485 iter 70 value 80.265923 iter 80 value 79.981190 iter 90 value 79.694992 iter 100 value 79.677813 final value 79.677813 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 107.908936 iter 10 value 94.615178 iter 20 value 94.326997 iter 30 value 94.223759 iter 40 value 91.151724 iter 50 value 81.560772 iter 60 value 80.800309 iter 70 value 80.143497 iter 80 value 79.468304 iter 90 value 77.832473 iter 100 value 77.165292 final value 77.165292 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 103.333389 iter 10 value 94.985755 iter 20 value 89.510011 iter 30 value 83.330498 iter 40 value 82.780624 iter 50 value 81.701062 iter 60 value 80.254024 iter 70 value 79.865224 iter 80 value 79.268187 iter 90 value 78.335960 iter 100 value 77.923641 final value 77.923641 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 110.861676 iter 10 value 94.544417 iter 20 value 93.336215 iter 30 value 85.587093 iter 40 value 82.808384 iter 50 value 81.231160 iter 60 value 79.788136 iter 70 value 79.575944 iter 80 value 78.859223 iter 90 value 77.635298 iter 100 value 77.495478 final value 77.495478 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.522972 iter 10 value 94.491585 iter 20 value 86.617119 iter 30 value 84.206093 iter 40 value 83.792829 iter 50 value 82.789589 iter 60 value 81.453655 iter 70 value 79.541351 iter 80 value 78.806272 iter 90 value 78.096770 iter 100 value 77.555734 final value 77.555734 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 104.147315 iter 10 value 92.574665 iter 20 value 83.758914 iter 30 value 82.817872 iter 40 value 82.427853 iter 50 value 81.891866 iter 60 value 80.210064 iter 70 value 79.509839 iter 80 value 78.609356 iter 90 value 78.139722 iter 100 value 77.494995 final value 77.494995 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 131.274838 iter 10 value 93.743441 iter 20 value 84.220534 iter 30 value 82.197443 iter 40 value 81.273703 iter 50 value 79.826961 iter 60 value 79.144010 iter 70 value 78.958403 iter 80 value 78.838605 iter 90 value 78.420802 iter 100 value 77.620057 final value 77.620057 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 127.642383 iter 10 value 95.054802 iter 20 value 92.604751 iter 30 value 90.587948 iter 40 value 81.354763 iter 50 value 79.952650 iter 60 value 79.426971 iter 70 value 78.828108 iter 80 value 78.355711 iter 90 value 78.309755 iter 100 value 78.051113 final value 78.051113 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.752684 iter 10 value 94.373166 iter 20 value 84.953409 iter 30 value 82.427114 iter 40 value 81.929421 iter 50 value 80.709688 iter 60 value 79.796252 iter 70 value 78.803990 iter 80 value 78.014724 iter 90 value 77.970168 iter 100 value 77.819459 final value 77.819459 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.458978 iter 10 value 94.485870 iter 20 value 94.444391 final value 94.275485 converged Fitting Repeat 2 # weights: 103 initial value 96.027690 final value 94.486955 converged Fitting Repeat 3 # weights: 103 initial value 98.796543 iter 10 value 94.485744 iter 20 value 92.397006 iter 30 value 89.921229 iter 40 value 89.902859 iter 50 value 89.901618 final value 89.901582 converged Fitting Repeat 4 # weights: 103 initial value 96.555515 final value 94.486122 converged Fitting Repeat 5 # weights: 103 initial value 97.388883 iter 10 value 94.277019 iter 20 value 94.276639 iter 30 value 94.275613 final value 94.275540 converged Fitting Repeat 1 # weights: 305 initial value 98.508224 iter 10 value 94.485077 final value 94.484215 converged Fitting Repeat 2 # weights: 305 initial value 96.351679 iter 10 value 94.489236 iter 20 value 94.449684 iter 30 value 93.765718 iter 40 value 88.021659 iter 50 value 86.475553 iter 60 value 86.447374 iter 70 value 86.186205 iter 80 value 86.078479 final value 86.077921 converged Fitting Repeat 3 # weights: 305 initial value 102.018871 iter 10 value 94.488469 iter 20 value 93.943100 iter 30 value 91.074819 final value 91.074761 converged Fitting Repeat 4 # weights: 305 initial value 100.607908 iter 10 value 94.488244 iter 20 value 94.468874 iter 30 value 92.095692 iter 40 value 81.949583 iter 50 value 81.330356 iter 60 value 81.251942 iter 70 value 81.164641 iter 80 value 80.506201 iter 90 value 77.829128 iter 100 value 76.290780 final value 76.290780 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 99.155439 iter 10 value 94.489281 iter 20 value 92.743546 iter 30 value 82.626749 final value 82.626098 converged Fitting Repeat 1 # weights: 507 initial value 96.848971 iter 10 value 83.636523 iter 20 value 81.129078 iter 30 value 79.459617 iter 40 value 79.419281 iter 50 value 79.418161 iter 60 value 79.258600 iter 70 value 79.029249 iter 80 value 79.026029 iter 90 value 78.989880 iter 100 value 78.966551 final value 78.966551 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 104.592020 iter 10 value 93.296668 iter 20 value 91.031400 iter 30 value 90.967603 iter 40 value 90.965982 iter 50 value 89.795386 iter 60 value 89.716736 iter 70 value 89.561800 iter 80 value 86.109521 iter 90 value 84.183383 iter 100 value 83.467532 final value 83.467532 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.163281 iter 10 value 94.492498 iter 20 value 89.021609 iter 30 value 86.657645 iter 40 value 86.632764 iter 50 value 86.631350 iter 60 value 86.627194 iter 70 value 86.622631 iter 80 value 86.532408 iter 90 value 86.532024 iter 100 value 86.529595 final value 86.529595 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.621558 iter 10 value 94.492053 iter 20 value 94.365311 iter 30 value 82.883433 iter 40 value 82.812784 iter 50 value 82.812610 iter 60 value 82.810397 iter 70 value 82.597708 iter 80 value 82.565961 iter 90 value 82.565891 iter 100 value 82.565349 final value 82.565349 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.048056 iter 10 value 93.712502 iter 20 value 93.710053 iter 30 value 93.702462 iter 40 value 86.147883 iter 50 value 81.127699 iter 60 value 80.757086 iter 70 value 80.657007 iter 80 value 78.937649 iter 90 value 77.621641 iter 100 value 77.583282 final value 77.583282 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.976888 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 99.206515 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 100.113167 final value 93.915746 converged Fitting Repeat 4 # weights: 103 initial value 98.150836 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 94.867461 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 113.408813 iter 10 value 94.052910 iter 10 value 94.052910 iter 10 value 94.052910 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 101.840314 final value 93.915746 converged Fitting Repeat 3 # weights: 305 initial value 96.661609 final value 93.864628 converged Fitting Repeat 4 # weights: 305 initial value 97.607265 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 108.140309 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 110.687011 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 95.604061 iter 10 value 94.003336 iter 20 value 93.915766 final value 93.915747 converged Fitting Repeat 3 # weights: 507 initial value 99.578687 iter 10 value 93.853426 iter 20 value 85.481340 iter 30 value 84.778334 iter 40 value 84.775216 final value 84.775168 converged Fitting Repeat 4 # weights: 507 initial value 98.992538 iter 10 value 93.618151 iter 20 value 93.410404 iter 30 value 91.446569 iter 40 value 91.424898 iter 50 value 91.422457 iter 60 value 91.116061 iter 70 value 90.705044 iter 80 value 90.703523 final value 90.703512 converged Fitting Repeat 5 # weights: 507 initial value 113.406367 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 101.806576 iter 10 value 94.060076 iter 20 value 93.948250 iter 30 value 93.944755 iter 40 value 93.573794 iter 50 value 90.079084 iter 60 value 88.297268 iter 70 value 86.147812 iter 80 value 83.861271 iter 90 value 83.471383 iter 100 value 83.281670 final value 83.281670 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 100.136235 iter 10 value 94.056667 iter 20 value 93.971912 iter 30 value 91.872176 iter 40 value 88.654119 iter 50 value 87.845390 iter 60 value 87.706676 iter 70 value 86.909741 iter 80 value 83.964753 iter 90 value 83.657124 iter 100 value 83.437289 final value 83.437289 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 103.623384 iter 10 value 94.014323 iter 20 value 93.661958 iter 30 value 92.139059 iter 40 value 89.372147 iter 50 value 86.544537 iter 60 value 86.037263 iter 70 value 85.749424 iter 80 value 83.659756 iter 90 value 83.356848 iter 100 value 83.251305 final value 83.251305 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 108.004475 iter 10 value 94.040516 iter 20 value 93.757546 iter 30 value 88.802056 iter 40 value 87.584983 iter 50 value 85.457929 iter 60 value 85.346791 iter 70 value 85.306043 iter 80 value 85.290916 iter 90 value 85.236723 iter 100 value 85.191747 final value 85.191747 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 102.632937 iter 10 value 94.052333 iter 20 value 92.702129 iter 30 value 90.376057 iter 40 value 88.177261 iter 50 value 87.567549 iter 60 value 86.857148 iter 70 value 85.427053 iter 80 value 85.089272 iter 90 value 84.924469 iter 100 value 84.896541 final value 84.896541 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 100.975420 iter 10 value 94.238322 iter 20 value 93.949646 iter 30 value 89.435371 iter 40 value 84.502457 iter 50 value 83.809891 iter 60 value 83.165080 iter 70 value 83.001677 iter 80 value 82.970490 iter 90 value 82.912623 iter 100 value 82.889072 final value 82.889072 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 110.187495 iter 10 value 93.691338 iter 20 value 90.694856 iter 30 value 87.776207 iter 40 value 85.619874 iter 50 value 85.366747 iter 60 value 85.130516 iter 70 value 85.083746 iter 80 value 85.014665 iter 90 value 84.914102 iter 100 value 84.541388 final value 84.541388 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 104.686020 iter 10 value 90.994588 iter 20 value 87.400351 iter 30 value 86.132461 iter 40 value 85.382804 iter 50 value 85.342079 iter 60 value 85.183181 iter 70 value 85.026764 iter 80 value 83.600758 iter 90 value 83.002244 iter 100 value 82.893541 final value 82.893541 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 109.521233 iter 10 value 94.052334 iter 20 value 90.834140 iter 30 value 87.451700 iter 40 value 87.260681 iter 50 value 85.480130 iter 60 value 84.697641 iter 70 value 83.936524 iter 80 value 83.862750 iter 90 value 83.515301 iter 100 value 83.103861 final value 83.103861 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.313888 iter 10 value 93.837892 iter 20 value 92.301233 iter 30 value 91.225007 iter 40 value 90.934124 iter 50 value 89.159431 iter 60 value 87.365835 iter 70 value 86.412945 iter 80 value 86.181974 iter 90 value 85.912279 iter 100 value 85.518631 final value 85.518631 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.133824 iter 10 value 94.278071 iter 20 value 93.769378 iter 30 value 90.783305 iter 40 value 86.499331 iter 50 value 85.075215 iter 60 value 84.666310 iter 70 value 84.128250 iter 80 value 83.146565 iter 90 value 82.301518 iter 100 value 82.080349 final value 82.080349 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 113.137118 iter 10 value 94.306519 iter 20 value 90.245393 iter 30 value 87.737474 iter 40 value 87.207548 iter 50 value 85.377666 iter 60 value 84.042742 iter 70 value 83.592061 iter 80 value 83.260744 iter 90 value 82.360024 iter 100 value 81.956577 final value 81.956577 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 120.111926 iter 10 value 94.594026 iter 20 value 91.127005 iter 30 value 88.636065 iter 40 value 84.751468 iter 50 value 83.493923 iter 60 value 82.869508 iter 70 value 82.329664 iter 80 value 82.193844 iter 90 value 82.116917 iter 100 value 81.862468 final value 81.862468 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.901895 iter 10 value 90.488077 iter 20 value 87.877815 iter 30 value 86.893310 iter 40 value 83.039411 iter 50 value 81.759814 iter 60 value 81.505995 iter 70 value 81.232344 iter 80 value 81.182444 iter 90 value 81.140832 iter 100 value 81.134447 final value 81.134447 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 111.266701 iter 10 value 93.745133 iter 20 value 87.830573 iter 30 value 87.375331 iter 40 value 84.385981 iter 50 value 83.810191 iter 60 value 83.483637 iter 70 value 83.277463 iter 80 value 82.950004 iter 90 value 82.350967 iter 100 value 81.897416 final value 81.897416 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 101.257414 iter 10 value 93.290511 final value 93.290493 converged Fitting Repeat 2 # weights: 103 initial value 99.757341 final value 94.054387 converged Fitting Repeat 3 # weights: 103 initial value 95.501166 final value 94.054463 converged Fitting Repeat 4 # weights: 103 initial value 95.834940 final value 94.054486 converged Fitting Repeat 5 # weights: 103 initial value 98.129004 final value 94.054451 converged Fitting Repeat 1 # weights: 305 initial value 105.473542 iter 10 value 94.058246 iter 20 value 94.053238 iter 30 value 92.845125 iter 40 value 86.796735 iter 40 value 86.796735 iter 40 value 86.796735 final value 86.796735 converged Fitting Repeat 2 # weights: 305 initial value 94.332935 iter 10 value 94.057280 iter 20 value 94.039528 iter 30 value 86.064540 iter 40 value 84.784034 iter 50 value 84.783941 final value 84.783631 converged Fitting Repeat 3 # weights: 305 initial value 97.613479 iter 10 value 94.056832 iter 20 value 93.916645 final value 93.915802 converged Fitting Repeat 4 # weights: 305 initial value 111.100145 iter 10 value 94.048292 iter 20 value 93.780436 iter 30 value 92.557775 iter 40 value 92.547501 iter 50 value 92.547280 iter 60 value 92.048000 iter 70 value 91.919452 final value 91.919425 converged Fitting Repeat 5 # weights: 305 initial value 116.447804 iter 10 value 94.057877 iter 20 value 94.017731 iter 30 value 93.893907 iter 40 value 93.882507 final value 93.864679 converged Fitting Repeat 1 # weights: 507 initial value 102.550864 iter 10 value 92.747438 iter 20 value 86.936411 iter 30 value 86.935466 iter 40 value 86.842830 iter 50 value 83.214539 iter 60 value 82.869107 iter 70 value 82.072550 iter 80 value 81.371972 iter 90 value 80.911661 iter 100 value 80.072554 final value 80.072554 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 96.827490 iter 10 value 92.523683 iter 20 value 92.483293 iter 30 value 91.564874 iter 40 value 91.485861 iter 50 value 91.442796 iter 60 value 91.442154 final value 91.441802 converged Fitting Repeat 3 # weights: 507 initial value 118.031078 iter 10 value 93.923550 iter 20 value 93.892892 iter 30 value 91.669097 iter 40 value 91.447405 iter 50 value 89.498968 iter 60 value 87.816377 iter 70 value 87.680507 iter 80 value 87.673133 iter 90 value 87.642893 iter 100 value 87.179040 final value 87.179040 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 96.683616 iter 10 value 92.179697 iter 20 value 92.112430 iter 30 value 92.106167 iter 40 value 92.105403 iter 50 value 91.786522 iter 60 value 91.769774 final value 91.755267 converged Fitting Repeat 5 # weights: 507 initial value 113.401834 iter 10 value 94.060509 iter 20 value 94.042631 iter 30 value 88.489580 iter 40 value 86.368616 iter 50 value 86.143066 iter 60 value 84.468679 iter 70 value 84.453984 iter 80 value 84.446706 iter 90 value 84.341164 iter 100 value 83.921550 final value 83.921550 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.997845 final value 94.008696 converged Fitting Repeat 2 # weights: 103 initial value 97.723332 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 100.049650 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 94.633551 final value 94.008696 converged Fitting Repeat 5 # weights: 103 initial value 103.193397 final value 94.052911 converged Fitting Repeat 1 # weights: 305 initial value 96.991441 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 97.095818 iter 10 value 94.017036 final value 93.998730 converged Fitting Repeat 3 # weights: 305 initial value 97.305716 iter 10 value 93.085705 iter 20 value 92.980661 final value 92.980619 converged Fitting Repeat 4 # weights: 305 initial value 96.011365 final value 93.900000 converged Fitting Repeat 5 # weights: 305 initial value 96.999738 iter 10 value 93.332647 final value 93.276243 converged Fitting Repeat 1 # weights: 507 initial value 97.707242 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 95.706954 final value 93.276243 converged Fitting Repeat 3 # weights: 507 initial value 106.026574 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 106.884756 final value 94.008696 converged Fitting Repeat 5 # weights: 507 initial value 94.254780 iter 10 value 92.212984 final value 92.211111 converged Fitting Repeat 1 # weights: 103 initial value 98.184077 iter 10 value 93.992024 iter 20 value 85.335151 iter 30 value 84.839816 iter 40 value 83.596632 iter 50 value 82.652668 iter 60 value 82.600371 iter 70 value 82.595402 final value 82.595401 converged Fitting Repeat 2 # weights: 103 initial value 104.144899 iter 10 value 94.056933 iter 20 value 93.711366 iter 30 value 93.500806 iter 40 value 93.415105 iter 50 value 92.131362 iter 60 value 85.641788 iter 70 value 83.537538 iter 80 value 83.204187 iter 90 value 83.076714 iter 100 value 82.114019 final value 82.114019 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 98.597436 iter 10 value 94.058678 iter 20 value 88.435780 iter 30 value 86.943951 iter 40 value 85.813101 iter 50 value 84.962605 iter 60 value 84.717390 iter 70 value 84.714613 iter 80 value 84.704122 iter 90 value 84.658458 iter 100 value 84.654708 final value 84.654708 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 106.488443 iter 10 value 94.019548 iter 20 value 93.455483 iter 30 value 93.391403 iter 40 value 93.301419 iter 50 value 89.942169 iter 60 value 85.354999 iter 70 value 84.506145 iter 80 value 84.248759 iter 90 value 82.815177 iter 100 value 81.705893 final value 81.705893 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 97.058179 iter 10 value 94.063004 iter 20 value 93.364529 iter 30 value 93.243477 iter 40 value 93.225522 iter 50 value 86.888272 iter 60 value 84.858381 iter 70 value 83.945646 iter 80 value 83.528515 iter 90 value 82.671804 iter 100 value 82.595603 final value 82.595603 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 127.582763 iter 10 value 93.568452 iter 20 value 92.554173 iter 30 value 91.852785 iter 40 value 91.641661 iter 50 value 90.928969 iter 60 value 86.702146 iter 70 value 81.897852 iter 80 value 80.496197 iter 90 value 80.111465 iter 100 value 80.034923 final value 80.034923 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 100.556910 iter 10 value 93.974424 iter 20 value 92.673873 iter 30 value 88.837487 iter 40 value 87.346414 iter 50 value 86.637701 iter 60 value 83.595869 iter 70 value 81.770558 iter 80 value 81.451282 iter 90 value 81.024005 iter 100 value 80.088091 final value 80.088091 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.046571 iter 10 value 94.111768 iter 20 value 90.313363 iter 30 value 84.997965 iter 40 value 84.118882 iter 50 value 83.135530 iter 60 value 81.884778 iter 70 value 80.900029 iter 80 value 80.698996 iter 90 value 80.400320 iter 100 value 80.270279 final value 80.270279 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 116.998563 iter 10 value 94.396247 iter 20 value 83.796877 iter 30 value 83.156486 iter 40 value 82.500570 iter 50 value 80.950773 iter 60 value 80.327061 iter 70 value 80.208167 iter 80 value 79.877411 iter 90 value 79.515413 iter 100 value 79.456727 final value 79.456727 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.203299 iter 10 value 93.981839 iter 20 value 85.947159 iter 30 value 85.140436 iter 40 value 83.840849 iter 50 value 80.418074 iter 60 value 79.991757 iter 70 value 79.790733 iter 80 value 79.707806 iter 90 value 79.693310 iter 100 value 79.590367 final value 79.590367 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.285738 iter 10 value 94.535317 iter 20 value 94.072080 iter 30 value 93.147788 iter 40 value 90.712420 iter 50 value 88.919647 iter 60 value 85.482174 iter 70 value 83.514524 iter 80 value 83.276606 iter 90 value 83.053643 iter 100 value 82.980363 final value 82.980363 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 107.277023 iter 10 value 95.195657 iter 20 value 94.058382 iter 30 value 88.411446 iter 40 value 84.434418 iter 50 value 81.864957 iter 60 value 81.521069 iter 70 value 81.474663 iter 80 value 80.803163 iter 90 value 79.941294 iter 100 value 79.574248 final value 79.574248 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 136.149142 iter 10 value 94.578212 iter 20 value 93.513962 iter 30 value 92.853667 iter 40 value 89.354387 iter 50 value 85.903949 iter 60 value 83.699498 iter 70 value 83.598646 iter 80 value 83.392203 iter 90 value 83.266056 iter 100 value 83.161177 final value 83.161177 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.307599 iter 10 value 94.065315 iter 20 value 93.451387 iter 30 value 93.273271 iter 40 value 86.203839 iter 50 value 83.934519 iter 60 value 82.113686 iter 70 value 80.357942 iter 80 value 80.191203 iter 90 value 80.028937 iter 100 value 79.691952 final value 79.691952 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.221413 iter 10 value 94.885905 iter 20 value 84.448097 iter 30 value 83.396452 iter 40 value 82.991316 iter 50 value 82.692385 iter 60 value 81.086675 iter 70 value 80.382892 iter 80 value 80.127594 iter 90 value 80.031437 iter 100 value 79.964808 final value 79.964808 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 110.028196 final value 94.054444 converged Fitting Repeat 2 # weights: 103 initial value 95.797626 final value 94.054489 converged Fitting Repeat 3 # weights: 103 initial value 96.508079 final value 94.054644 converged Fitting Repeat 4 # weights: 103 initial value 99.925867 final value 94.054369 converged Fitting Repeat 5 # weights: 103 initial value 100.209758 iter 10 value 94.054403 iter 20 value 93.510167 iter 30 value 85.093246 final value 85.086024 converged Fitting Repeat 1 # weights: 305 initial value 96.054613 iter 10 value 94.057753 iter 20 value 93.955248 iter 30 value 87.632392 iter 40 value 85.553331 iter 50 value 85.356087 iter 60 value 85.259198 iter 70 value 85.224259 iter 80 value 85.072884 iter 90 value 84.657154 iter 100 value 80.536084 final value 80.536084 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.259631 iter 10 value 94.013754 iter 20 value 94.010249 iter 30 value 94.009845 iter 40 value 82.826920 iter 50 value 79.022988 iter 60 value 78.697425 iter 70 value 78.694846 iter 80 value 78.693245 iter 90 value 78.692701 iter 100 value 78.692167 final value 78.692167 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 124.782614 iter 10 value 94.061620 iter 20 value 90.607516 iter 30 value 90.366927 iter 40 value 86.825920 iter 50 value 86.264236 iter 60 value 86.262308 iter 70 value 86.260852 iter 80 value 86.260541 iter 80 value 86.260540 iter 80 value 86.260540 final value 86.260540 converged Fitting Repeat 4 # weights: 305 initial value 100.873889 iter 10 value 94.056929 iter 20 value 94.035655 final value 94.009763 converged Fitting Repeat 5 # weights: 305 initial value 99.690594 iter 10 value 94.057949 iter 20 value 94.053119 iter 30 value 84.647023 iter 40 value 84.612259 iter 50 value 83.670582 iter 60 value 82.701785 iter 70 value 82.362164 final value 82.360585 converged Fitting Repeat 1 # weights: 507 initial value 103.172336 iter 10 value 94.061018 iter 20 value 86.504628 iter 30 value 86.170310 iter 40 value 86.157601 iter 50 value 82.189885 iter 60 value 81.773170 iter 70 value 81.740862 final value 81.739706 converged Fitting Repeat 2 # weights: 507 initial value 100.759196 iter 10 value 93.907835 iter 20 value 92.498819 iter 30 value 85.414550 iter 40 value 83.543699 iter 50 value 81.393965 iter 60 value 81.346505 final value 81.344031 converged Fitting Repeat 3 # weights: 507 initial value 95.158161 iter 10 value 94.016526 iter 20 value 94.016162 iter 30 value 93.930029 iter 40 value 93.458789 iter 50 value 88.739263 iter 60 value 88.552204 iter 70 value 87.855813 iter 80 value 87.102052 iter 90 value 86.812255 iter 100 value 86.792472 final value 86.792472 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 99.555501 iter 10 value 94.505800 iter 20 value 88.463647 iter 30 value 88.426477 iter 40 value 83.480117 iter 50 value 83.148858 final value 83.148316 converged Fitting Repeat 5 # weights: 507 initial value 95.453649 iter 10 value 94.060595 iter 20 value 92.184439 iter 30 value 88.106124 iter 40 value 88.020530 iter 50 value 88.008720 iter 60 value 87.999730 final value 87.995444 converged Fitting Repeat 1 # weights: 305 initial value 136.253518 iter 10 value 117.960519 iter 20 value 113.527436 iter 30 value 106.077050 iter 40 value 105.892525 iter 50 value 105.290711 iter 60 value 105.035793 iter 70 value 104.926812 iter 80 value 104.849250 iter 90 value 103.939501 iter 100 value 101.848191 final value 101.848191 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 134.876773 iter 10 value 117.857441 iter 20 value 109.422723 iter 30 value 105.603618 iter 40 value 103.499143 iter 50 value 101.807561 iter 60 value 100.898944 iter 70 value 100.817799 iter 80 value 100.787597 iter 90 value 100.730806 iter 100 value 100.717625 final value 100.717625 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 127.953270 iter 10 value 116.398736 iter 20 value 108.228812 iter 30 value 106.300906 iter 40 value 103.661410 iter 50 value 101.832614 iter 60 value 101.014315 iter 70 value 100.938509 iter 80 value 100.883067 iter 90 value 100.775843 iter 100 value 100.739697 final value 100.739697 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 123.321111 iter 10 value 110.763457 iter 20 value 105.688218 iter 30 value 105.058826 iter 40 value 103.871637 iter 50 value 102.745668 iter 60 value 102.654844 iter 70 value 102.630021 iter 80 value 101.490573 iter 90 value 101.413715 iter 100 value 101.123225 final value 101.123225 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 146.890600 iter 10 value 117.501205 iter 20 value 110.381242 iter 30 value 108.068460 iter 40 value 104.925841 iter 50 value 103.189694 iter 60 value 102.526339 iter 70 value 101.880892 iter 80 value 101.113603 iter 90 value 100.780956 iter 100 value 100.664866 final value 100.664866 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Fri Jul 5 23:47:41 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 41.679 1.962 44.165
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 34.808 | 0.583 | 35.393 | |
FreqInteractors | 0.24 | 0.00 | 0.24 | |
calculateAAC | 0.037 | 0.004 | 0.042 | |
calculateAutocor | 0.305 | 0.024 | 0.329 | |
calculateCTDC | 0.076 | 0.000 | 0.076 | |
calculateCTDD | 0.573 | 0.004 | 0.577 | |
calculateCTDT | 0.231 | 0.004 | 0.235 | |
calculateCTriad | 0.680 | 0.008 | 0.687 | |
calculateDC | 0.079 | 0.004 | 0.083 | |
calculateF | 0.324 | 0.000 | 0.324 | |
calculateKSAAP | 0.089 | 0.000 | 0.089 | |
calculateQD_Sm | 1.637 | 0.027 | 1.665 | |
calculateTC | 1.444 | 0.048 | 1.492 | |
calculateTC_Sm | 0.312 | 0.000 | 0.313 | |
corr_plot | 34.761 | 0.439 | 35.202 | |
enrichfindP | 0.491 | 0.060 | 9.361 | |
enrichfind_hp | 0.080 | 0.004 | 1.034 | |
enrichplot | 0.351 | 0.012 | 0.364 | |
filter_missing_values | 0.001 | 0.000 | 0.001 | |
getFASTA | 0.381 | 0.008 | 3.695 | |
getHPI | 0.001 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.001 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.001 | 0.000 | 0.002 | |
plotPPI | 0.074 | 0.004 | 0.078 | |
pred_ensembel | 13.496 | 0.592 | 10.869 | |
var_imp | 36.110 | 0.904 | 37.015 | |