Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-13 11:43 -0400 (Sat, 13 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 963/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.11.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.11.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz |
StartedAt: 2024-07-12 21:53:14 -0400 (Fri, 12 Jul 2024) |
EndedAt: 2024-07-12 21:55:28 -0400 (Fri, 12 Jul 2024) |
EllapsedTime: 133.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 18.099 0.618 18.746 FSmethod 17.761 0.605 18.398 corr_plot 16.631 0.501 17.141 pred_ensembel 5.968 0.479 4.553 enrichfindP 0.170 0.027 8.034 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 95.637252 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 100.917917 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 99.939241 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 98.095149 final value 94.052914 converged Fitting Repeat 5 # weights: 103 initial value 102.965627 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 128.598103 iter 10 value 94.052912 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 113.249925 final value 93.915746 converged Fitting Repeat 3 # weights: 305 initial value 97.392127 iter 10 value 87.370540 final value 86.997168 converged Fitting Repeat 4 # weights: 305 initial value 98.009721 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 104.994754 iter 10 value 93.950546 iter 20 value 93.915746 iter 20 value 93.915746 iter 20 value 93.915746 final value 93.915746 converged Fitting Repeat 1 # weights: 507 initial value 102.108196 final value 93.915746 converged Fitting Repeat 2 # weights: 507 initial value 108.110101 iter 10 value 92.036042 iter 20 value 90.924363 iter 30 value 88.014659 iter 40 value 87.295363 iter 50 value 87.294923 final value 87.294832 converged Fitting Repeat 3 # weights: 507 initial value 105.452623 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 101.319918 iter 10 value 93.691660 iter 20 value 93.604834 iter 30 value 92.181864 iter 40 value 90.553957 iter 50 value 89.673925 iter 60 value 89.672068 final value 89.672009 converged Fitting Repeat 5 # weights: 507 initial value 120.477744 iter 10 value 93.604492 final value 93.486630 converged Fitting Repeat 1 # weights: 103 initial value 95.861882 iter 10 value 94.055477 iter 20 value 91.175894 iter 30 value 87.648919 iter 40 value 85.344478 iter 50 value 85.203605 iter 60 value 84.165130 iter 70 value 83.759651 iter 80 value 83.222233 iter 90 value 82.828282 final value 82.826681 converged Fitting Repeat 2 # weights: 103 initial value 102.376517 iter 10 value 94.057175 iter 20 value 89.315827 iter 30 value 87.667565 iter 40 value 87.263333 iter 50 value 84.011024 iter 60 value 83.878949 iter 70 value 83.867270 final value 83.866897 converged Fitting Repeat 3 # weights: 103 initial value 109.294247 iter 10 value 94.055181 iter 20 value 93.995445 iter 30 value 93.899500 iter 40 value 91.099267 iter 50 value 86.652872 iter 60 value 86.250522 iter 70 value 84.553997 iter 80 value 83.490744 iter 90 value 82.827609 final value 82.826681 converged Fitting Repeat 4 # weights: 103 initial value 103.097365 iter 10 value 93.095493 iter 20 value 87.746568 iter 30 value 85.880960 iter 40 value 84.588557 iter 50 value 84.329302 iter 60 value 84.321927 final value 84.313408 converged Fitting Repeat 5 # weights: 103 initial value 105.290016 iter 10 value 93.357769 iter 20 value 87.934896 iter 30 value 84.211587 iter 40 value 83.781705 iter 50 value 83.073839 iter 60 value 82.813858 iter 70 value 82.717648 iter 80 value 82.649773 final value 82.649771 converged Fitting Repeat 1 # weights: 305 initial value 103.178562 iter 10 value 94.614462 iter 20 value 92.733455 iter 30 value 91.718545 iter 40 value 88.676980 iter 50 value 84.476072 iter 60 value 84.344807 iter 70 value 84.233334 iter 80 value 83.646662 iter 90 value 83.547347 iter 100 value 83.105961 final value 83.105961 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 107.144751 iter 10 value 94.089059 iter 20 value 93.917806 iter 30 value 93.283114 iter 40 value 85.750461 iter 50 value 85.248039 iter 60 value 84.498032 iter 70 value 84.187775 iter 80 value 84.040255 iter 90 value 83.653085 iter 100 value 82.750778 final value 82.750778 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.851488 iter 10 value 93.440851 iter 20 value 88.339763 iter 30 value 85.573421 iter 40 value 84.627004 iter 50 value 84.561267 iter 60 value 84.483748 iter 70 value 83.651962 iter 80 value 82.676032 iter 90 value 81.904672 iter 100 value 81.503614 final value 81.503614 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 100.296865 iter 10 value 94.012780 iter 20 value 90.929114 iter 30 value 87.277874 iter 40 value 86.120108 iter 50 value 85.458323 iter 60 value 85.335122 iter 70 value 83.678901 iter 80 value 82.280337 iter 90 value 81.806329 iter 100 value 81.306389 final value 81.306389 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.056366 iter 10 value 93.895899 iter 20 value 91.683880 iter 30 value 86.317311 iter 40 value 84.615912 iter 50 value 83.367685 iter 60 value 82.790445 iter 70 value 82.400113 iter 80 value 81.937360 iter 90 value 81.698915 iter 100 value 81.667887 final value 81.667887 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 113.938809 iter 10 value 94.428504 iter 20 value 88.572518 iter 30 value 87.526758 iter 40 value 86.372420 iter 50 value 85.095742 iter 60 value 84.714231 iter 70 value 84.473287 iter 80 value 83.659055 iter 90 value 82.858193 iter 100 value 81.546900 final value 81.546900 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 123.554849 iter 10 value 94.078095 iter 20 value 87.902949 iter 30 value 85.046187 iter 40 value 83.758092 iter 50 value 83.065225 iter 60 value 82.494058 iter 70 value 81.705528 iter 80 value 81.297353 iter 90 value 81.193139 iter 100 value 81.054528 final value 81.054528 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 111.486506 iter 10 value 94.086517 iter 20 value 93.686460 iter 30 value 87.268588 iter 40 value 86.578734 iter 50 value 84.832108 iter 60 value 84.010272 iter 70 value 83.978606 iter 80 value 83.861433 iter 90 value 83.647499 iter 100 value 82.921842 final value 82.921842 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 109.826255 iter 10 value 94.408596 iter 20 value 87.502127 iter 30 value 84.868547 iter 40 value 83.213088 iter 50 value 82.195117 iter 60 value 81.877422 iter 70 value 81.285477 iter 80 value 81.225522 iter 90 value 81.156166 iter 100 value 81.065056 final value 81.065056 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 112.551902 iter 10 value 94.171878 iter 20 value 93.539307 iter 30 value 92.205210 iter 40 value 85.376408 iter 50 value 84.998394 iter 60 value 84.362769 iter 70 value 82.941679 iter 80 value 82.099048 iter 90 value 81.704314 iter 100 value 81.681952 final value 81.681952 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.504006 final value 94.054396 converged Fitting Repeat 2 # weights: 103 initial value 101.722473 final value 94.054664 converged Fitting Repeat 3 # weights: 103 initial value 99.552286 final value 94.054499 converged Fitting Repeat 4 # weights: 103 initial value 102.561431 iter 10 value 94.109956 iter 20 value 94.103585 iter 30 value 94.055358 final value 94.052918 converged Fitting Repeat 5 # weights: 103 initial value 98.960159 iter 10 value 94.054679 iter 20 value 94.038477 iter 30 value 84.802224 iter 40 value 84.792249 iter 50 value 84.784187 iter 60 value 84.776096 iter 70 value 84.772446 iter 80 value 84.766829 iter 90 value 84.766492 iter 100 value 84.574607 final value 84.574607 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 111.229379 iter 10 value 93.920881 iter 20 value 93.397243 iter 30 value 84.864520 iter 40 value 84.779163 iter 50 value 84.778458 iter 60 value 84.778204 iter 70 value 84.777145 iter 80 value 84.568821 iter 90 value 82.823833 iter 100 value 80.922928 final value 80.922928 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 110.479415 iter 10 value 94.057959 iter 20 value 94.052941 iter 30 value 93.577263 iter 40 value 90.267136 iter 50 value 89.923228 iter 60 value 85.057143 iter 70 value 84.163445 iter 80 value 83.477416 iter 90 value 82.548635 final value 82.544501 converged Fitting Repeat 3 # weights: 305 initial value 94.305642 iter 10 value 93.898853 iter 20 value 93.827058 iter 30 value 93.611598 final value 93.605262 converged Fitting Repeat 4 # weights: 305 initial value 107.877074 iter 10 value 94.057279 iter 20 value 93.964768 iter 30 value 93.122015 iter 40 value 92.502594 iter 50 value 84.412785 iter 60 value 83.802650 iter 70 value 83.787152 iter 80 value 83.112263 iter 90 value 82.730635 iter 100 value 82.699240 final value 82.699240 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 120.835745 iter 10 value 93.823774 iter 20 value 93.610002 iter 30 value 92.898058 iter 40 value 89.329783 iter 50 value 82.626429 iter 60 value 82.262671 iter 70 value 82.249654 iter 80 value 82.066321 iter 90 value 81.908309 iter 100 value 81.819800 final value 81.819800 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 96.571445 iter 10 value 84.944036 iter 20 value 84.263801 iter 30 value 84.196049 final value 84.195369 converged Fitting Repeat 2 # weights: 507 initial value 100.664314 iter 10 value 93.317462 iter 20 value 93.210506 iter 30 value 93.209294 iter 40 value 93.208314 iter 50 value 93.208011 iter 60 value 93.180569 iter 70 value 92.902295 iter 80 value 86.526922 iter 90 value 85.687708 iter 100 value 85.452145 final value 85.452145 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 116.123676 iter 10 value 93.564143 iter 20 value 92.617347 iter 30 value 92.484927 iter 40 value 92.480406 iter 50 value 85.492529 iter 60 value 84.308509 iter 70 value 84.200010 iter 80 value 83.894874 iter 90 value 83.847353 final value 83.847243 converged Fitting Repeat 4 # weights: 507 initial value 99.727910 iter 10 value 93.970075 iter 20 value 93.719065 iter 30 value 93.421982 iter 40 value 93.321170 iter 50 value 93.083613 iter 60 value 93.082149 final value 93.082144 converged Fitting Repeat 5 # weights: 507 initial value 96.584981 iter 10 value 93.923529 iter 20 value 93.115057 iter 30 value 90.899561 iter 40 value 87.853359 iter 50 value 87.446177 iter 60 value 87.369002 iter 70 value 87.257612 iter 80 value 84.602859 iter 90 value 84.128233 iter 100 value 82.695214 final value 82.695214 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.862321 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 95.616541 final value 94.467391 converged Fitting Repeat 3 # weights: 103 initial value 104.938938 final value 94.482478 converged Fitting Repeat 4 # weights: 103 initial value 108.673879 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 110.473959 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 101.420039 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 103.012507 final value 94.430233 converged Fitting Repeat 3 # weights: 305 initial value 96.539959 final value 94.467391 converged Fitting Repeat 4 # weights: 305 initial value 114.573247 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 99.397828 iter 10 value 92.328376 iter 20 value 91.924906 iter 30 value 91.924400 final value 91.924391 converged Fitting Repeat 1 # weights: 507 initial value 106.995716 iter 10 value 94.463249 iter 20 value 94.463083 final value 94.463077 converged Fitting Repeat 2 # weights: 507 initial value 94.926045 iter 10 value 89.262767 iter 20 value 88.551049 iter 30 value 88.343984 iter 40 value 86.477636 iter 50 value 85.790261 iter 60 value 85.776478 iter 70 value 85.771479 iter 80 value 85.771429 iter 80 value 85.771429 iter 80 value 85.771429 final value 85.771429 converged Fitting Repeat 3 # weights: 507 initial value 98.518045 iter 10 value 86.239831 iter 20 value 84.848978 iter 30 value 84.844599 final value 84.844595 converged Fitting Repeat 4 # weights: 507 initial value 101.768234 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 106.438805 final value 94.449438 converged Fitting Repeat 1 # weights: 103 initial value 97.448762 iter 10 value 94.479920 iter 20 value 92.581806 iter 30 value 88.323854 iter 40 value 86.520235 iter 50 value 84.696621 iter 60 value 84.194625 iter 70 value 83.820335 iter 80 value 83.679977 iter 90 value 83.305385 iter 100 value 82.657282 final value 82.657282 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 104.373707 iter 10 value 94.484075 iter 20 value 94.292041 iter 30 value 93.520788 iter 40 value 92.506253 iter 50 value 89.806113 iter 60 value 86.945945 iter 70 value 85.854385 iter 80 value 85.235708 iter 90 value 84.471355 iter 100 value 84.231844 final value 84.231844 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 97.451398 iter 10 value 94.497001 iter 20 value 94.469761 iter 30 value 94.089391 iter 40 value 93.934862 iter 50 value 93.436709 iter 60 value 86.817288 iter 70 value 86.256111 iter 80 value 85.708108 iter 90 value 85.417534 iter 100 value 84.409564 final value 84.409564 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 98.995413 iter 10 value 94.503677 iter 20 value 94.221326 iter 30 value 86.555257 iter 40 value 85.121639 iter 50 value 83.486812 iter 60 value 82.665421 iter 70 value 82.520309 final value 82.516502 converged Fitting Repeat 5 # weights: 103 initial value 97.549211 iter 10 value 94.486833 iter 20 value 86.351593 iter 30 value 85.045992 iter 40 value 84.837351 iter 50 value 83.352733 iter 60 value 83.139183 iter 70 value 83.021261 iter 80 value 82.974749 iter 90 value 82.823336 final value 82.822169 converged Fitting Repeat 1 # weights: 305 initial value 100.891892 iter 10 value 94.516367 iter 20 value 92.783649 iter 30 value 91.674063 iter 40 value 87.089104 iter 50 value 84.587398 iter 60 value 84.179151 iter 70 value 83.778248 iter 80 value 83.378465 iter 90 value 83.257479 iter 100 value 83.253244 final value 83.253244 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 111.392127 iter 10 value 96.346768 iter 20 value 90.830981 iter 30 value 88.701518 iter 40 value 85.621758 iter 50 value 84.893432 iter 60 value 83.921984 iter 70 value 83.298999 iter 80 value 83.121726 iter 90 value 82.679662 iter 100 value 82.541983 final value 82.541983 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 131.076963 iter 10 value 94.086425 iter 20 value 92.825440 iter 30 value 91.508658 iter 40 value 85.444789 iter 50 value 84.007967 iter 60 value 83.193892 iter 70 value 82.113587 iter 80 value 82.047281 iter 90 value 81.834605 iter 100 value 81.489881 final value 81.489881 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.833230 iter 10 value 94.657722 iter 20 value 87.816099 iter 30 value 86.139655 iter 40 value 84.473854 iter 50 value 82.677820 iter 60 value 81.646742 iter 70 value 81.383748 iter 80 value 81.366120 iter 90 value 81.329409 iter 100 value 81.180415 final value 81.180415 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.179646 iter 10 value 94.708221 iter 20 value 92.902213 iter 30 value 87.954288 iter 40 value 86.257856 iter 50 value 85.813132 iter 60 value 85.495057 iter 70 value 84.508037 iter 80 value 83.685641 iter 90 value 82.575510 iter 100 value 82.081807 final value 82.081807 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 112.423481 iter 10 value 94.794733 iter 20 value 88.467581 iter 30 value 86.565506 iter 40 value 85.513780 iter 50 value 84.695803 iter 60 value 83.767396 iter 70 value 83.139009 iter 80 value 82.968647 iter 90 value 82.567548 iter 100 value 82.134791 final value 82.134791 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 124.727785 iter 10 value 94.608885 iter 20 value 94.076528 iter 30 value 90.462991 iter 40 value 86.880167 iter 50 value 85.665147 iter 60 value 84.173705 iter 70 value 82.445366 iter 80 value 81.666135 iter 90 value 81.425648 iter 100 value 81.151144 final value 81.151144 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 104.707882 iter 10 value 94.723680 iter 20 value 94.312458 iter 30 value 86.101841 iter 40 value 85.631076 iter 50 value 84.198417 iter 60 value 83.151778 iter 70 value 82.383253 iter 80 value 81.630701 iter 90 value 81.277953 iter 100 value 81.223109 final value 81.223109 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.919512 iter 10 value 94.382863 iter 20 value 89.909360 iter 30 value 88.471803 iter 40 value 87.081807 iter 50 value 85.471429 iter 60 value 83.238780 iter 70 value 82.939576 iter 80 value 82.827571 iter 90 value 82.428700 iter 100 value 81.777275 final value 81.777275 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.771621 iter 10 value 94.402328 iter 20 value 88.078715 iter 30 value 86.402246 iter 40 value 84.112189 iter 50 value 83.737342 iter 60 value 83.209643 iter 70 value 82.788301 iter 80 value 82.093231 iter 90 value 81.867777 iter 100 value 81.656562 final value 81.656562 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 101.961855 final value 94.486033 converged Fitting Repeat 2 # weights: 103 initial value 95.635810 iter 10 value 94.469109 iter 20 value 94.467516 iter 30 value 90.669063 final value 90.654954 converged Fitting Repeat 3 # weights: 103 initial value 97.456950 iter 10 value 94.486147 iter 20 value 94.483195 iter 30 value 92.726626 iter 40 value 91.615920 iter 50 value 86.290660 iter 60 value 85.723197 iter 70 value 85.542686 final value 85.541678 converged Fitting Repeat 4 # weights: 103 initial value 98.724533 final value 94.485732 converged Fitting Repeat 5 # weights: 103 initial value 99.771981 final value 94.485932 converged Fitting Repeat 1 # weights: 305 initial value 95.697188 iter 10 value 94.488952 iter 20 value 94.484289 iter 30 value 94.110663 iter 40 value 91.827241 iter 50 value 85.708551 iter 60 value 85.621997 iter 70 value 85.619612 iter 80 value 85.603994 iter 90 value 85.094654 iter 100 value 84.809680 final value 84.809680 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.843956 iter 10 value 94.489397 iter 20 value 94.483416 iter 30 value 91.885157 iter 40 value 91.791410 iter 50 value 91.557020 iter 60 value 91.079686 iter 70 value 91.063653 final value 91.063633 converged Fitting Repeat 3 # weights: 305 initial value 96.762452 iter 10 value 94.471992 iter 20 value 94.465099 iter 30 value 89.450327 iter 40 value 89.085754 iter 50 value 89.085481 final value 89.085476 converged Fitting Repeat 4 # weights: 305 initial value 102.698634 iter 10 value 94.472215 iter 20 value 94.467845 iter 30 value 92.595261 iter 40 value 92.404647 iter 50 value 92.404599 final value 92.404598 converged Fitting Repeat 5 # weights: 305 initial value 128.831952 iter 10 value 94.488444 iter 20 value 94.431990 iter 30 value 90.979917 iter 40 value 87.310729 iter 50 value 87.090462 iter 60 value 87.083962 iter 70 value 87.083562 iter 80 value 87.062750 iter 90 value 87.052584 final value 87.052008 converged Fitting Repeat 1 # weights: 507 initial value 116.584242 iter 10 value 94.475589 iter 20 value 92.980470 iter 30 value 92.170674 iter 40 value 92.017916 iter 50 value 91.953730 iter 60 value 91.892922 iter 70 value 91.891615 iter 80 value 91.318409 iter 90 value 90.542366 iter 100 value 90.541804 final value 90.541804 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 117.666394 iter 10 value 92.743093 iter 20 value 90.014341 iter 30 value 89.681490 iter 40 value 89.613663 iter 50 value 89.611595 iter 60 value 89.608502 iter 70 value 88.726641 final value 88.556820 converged Fitting Repeat 3 # weights: 507 initial value 104.286349 iter 10 value 94.491357 iter 20 value 94.450844 iter 30 value 87.186107 iter 40 value 85.708088 iter 50 value 85.692030 iter 60 value 85.455856 iter 70 value 85.411349 final value 85.411097 converged Fitting Repeat 4 # weights: 507 initial value 114.618977 iter 10 value 94.475936 iter 20 value 92.945776 iter 30 value 86.690283 iter 40 value 83.722635 iter 50 value 82.656350 iter 60 value 82.585568 iter 70 value 82.579341 iter 80 value 82.579114 iter 90 value 82.578430 iter 100 value 82.578265 final value 82.578265 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 94.715326 iter 10 value 88.808695 iter 20 value 88.479428 iter 30 value 88.473029 iter 40 value 87.402722 iter 50 value 84.374055 iter 60 value 83.178467 iter 70 value 83.163380 iter 80 value 83.162896 iter 90 value 83.162485 iter 100 value 82.964440 final value 82.964440 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.718733 iter 10 value 90.731642 iter 20 value 85.389388 iter 30 value 85.161180 iter 40 value 84.978008 iter 50 value 84.964342 final value 84.964286 converged Fitting Repeat 2 # weights: 103 initial value 101.997981 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 100.257034 iter 10 value 93.327590 iter 20 value 93.030295 iter 30 value 93.029479 final value 93.029459 converged Fitting Repeat 4 # weights: 103 initial value 94.526600 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 109.669218 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 95.422325 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 108.825717 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 114.071484 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 104.313109 iter 10 value 93.324759 final value 93.324696 converged Fitting Repeat 5 # weights: 305 initial value 97.476015 final value 94.035088 converged Fitting Repeat 1 # weights: 507 initial value 96.842607 iter 10 value 92.213305 iter 20 value 90.376675 iter 30 value 90.310256 iter 30 value 90.310256 iter 30 value 90.310256 final value 90.310256 converged Fitting Repeat 2 # weights: 507 initial value 102.853500 iter 10 value 93.328261 iter 10 value 93.328261 iter 10 value 93.328261 final value 93.328261 converged Fitting Repeat 3 # weights: 507 initial value 95.640990 iter 10 value 93.328259 iter 10 value 93.328259 iter 10 value 93.328259 final value 93.328259 converged Fitting Repeat 4 # weights: 507 initial value 104.734241 iter 10 value 93.328270 final value 93.328261 converged Fitting Repeat 5 # weights: 507 initial value 97.763063 iter 10 value 93.328264 final value 93.328261 converged Fitting Repeat 1 # weights: 103 initial value 100.609402 iter 10 value 93.640479 iter 20 value 89.206033 iter 30 value 82.640486 iter 40 value 81.123418 iter 50 value 80.805879 iter 60 value 80.679940 iter 70 value 80.270229 iter 80 value 79.849218 iter 90 value 79.335109 iter 100 value 79.296767 final value 79.296767 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 100.249994 iter 10 value 94.126087 iter 20 value 93.407347 iter 30 value 93.155296 iter 40 value 92.650299 iter 50 value 86.067938 iter 60 value 85.128546 iter 70 value 82.902228 iter 80 value 81.566574 iter 90 value 81.398278 iter 100 value 81.393253 final value 81.393253 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 97.929794 iter 10 value 93.967111 iter 20 value 91.067807 iter 30 value 89.359580 iter 40 value 88.809867 iter 50 value 88.793272 iter 60 value 88.784721 iter 70 value 88.713988 final value 88.709186 converged Fitting Repeat 4 # weights: 103 initial value 100.840509 iter 10 value 94.058197 iter 20 value 94.056675 iter 30 value 93.924262 iter 40 value 93.643176 iter 50 value 93.594519 iter 60 value 89.821807 iter 70 value 86.489820 iter 80 value 86.059209 iter 90 value 81.878477 iter 100 value 80.268569 final value 80.268569 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 99.296520 iter 10 value 93.986151 iter 20 value 84.919020 iter 30 value 83.109607 iter 40 value 82.091508 iter 50 value 81.692866 iter 60 value 81.449869 iter 70 value 81.394626 iter 80 value 81.392728 final value 81.392624 converged Fitting Repeat 1 # weights: 305 initial value 102.299014 iter 10 value 93.970985 iter 20 value 91.711898 iter 30 value 84.289076 iter 40 value 81.009801 iter 50 value 80.722051 iter 60 value 80.174867 iter 70 value 79.593685 iter 80 value 79.099385 iter 90 value 78.436892 iter 100 value 78.136389 final value 78.136389 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 104.790278 iter 10 value 94.052940 iter 20 value 93.687173 iter 30 value 86.919717 iter 40 value 84.275363 iter 50 value 83.126971 iter 60 value 81.542290 iter 70 value 79.581165 iter 80 value 78.802299 iter 90 value 78.319597 iter 100 value 78.215890 final value 78.215890 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.871772 iter 10 value 93.699787 iter 20 value 93.449755 iter 30 value 83.356289 iter 40 value 82.896402 iter 50 value 82.534241 iter 60 value 81.866200 iter 70 value 81.487693 iter 80 value 80.224274 iter 90 value 79.945451 iter 100 value 79.477688 final value 79.477688 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.987662 iter 10 value 93.956019 iter 20 value 89.671376 iter 30 value 88.427160 iter 40 value 83.246170 iter 50 value 82.772019 iter 60 value 81.674802 iter 70 value 81.034829 iter 80 value 80.266355 iter 90 value 79.920302 iter 100 value 79.719479 final value 79.719479 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.461953 iter 10 value 94.089221 iter 20 value 90.837501 iter 30 value 88.066564 iter 40 value 83.978642 iter 50 value 82.641094 iter 60 value 80.552438 iter 70 value 80.182603 iter 80 value 79.920147 iter 90 value 79.586723 iter 100 value 79.399350 final value 79.399350 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 143.072046 iter 10 value 94.106767 iter 20 value 87.233211 iter 30 value 83.588789 iter 40 value 81.586556 iter 50 value 80.150700 iter 60 value 79.097520 iter 70 value 78.363852 iter 80 value 78.248607 iter 90 value 78.207850 iter 100 value 78.172674 final value 78.172674 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 109.523497 iter 10 value 94.048903 iter 20 value 90.019999 iter 30 value 86.670956 iter 40 value 84.432059 iter 50 value 81.579860 iter 60 value 81.068036 iter 70 value 80.252275 iter 80 value 79.925177 iter 90 value 79.594929 iter 100 value 79.261244 final value 79.261244 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 123.240193 iter 10 value 93.616687 iter 20 value 91.372837 iter 30 value 82.148962 iter 40 value 80.515955 iter 50 value 78.306656 iter 60 value 77.854707 iter 70 value 77.749704 iter 80 value 77.609536 iter 90 value 77.595524 iter 100 value 77.563486 final value 77.563486 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.751011 iter 10 value 93.572397 iter 20 value 87.600911 iter 30 value 86.869537 iter 40 value 81.392521 iter 50 value 80.055798 iter 60 value 79.553280 iter 70 value 79.362653 iter 80 value 79.007589 iter 90 value 78.633796 iter 100 value 78.454445 final value 78.454445 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 105.626855 iter 10 value 94.236266 iter 20 value 84.837643 iter 30 value 83.013704 iter 40 value 79.279125 iter 50 value 78.534732 iter 60 value 78.368143 iter 70 value 78.206627 iter 80 value 78.035272 iter 90 value 77.761000 iter 100 value 77.701121 final value 77.701121 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.752274 iter 10 value 93.331446 iter 20 value 93.326514 iter 30 value 93.325082 iter 40 value 93.299338 iter 50 value 93.269146 final value 93.269141 converged Fitting Repeat 2 # weights: 103 initial value 95.521553 final value 94.054570 converged Fitting Repeat 3 # weights: 103 initial value 100.360678 final value 94.054638 converged Fitting Repeat 4 # weights: 103 initial value 100.189856 iter 10 value 83.854950 iter 20 value 82.780435 iter 30 value 82.774111 iter 40 value 82.770014 iter 50 value 82.733008 iter 60 value 82.717332 final value 82.717255 converged Fitting Repeat 5 # weights: 103 initial value 97.555243 final value 94.054517 converged Fitting Repeat 1 # weights: 305 initial value 113.310601 iter 10 value 94.059518 iter 20 value 93.827702 iter 30 value 91.541754 iter 40 value 90.027570 iter 50 value 82.541194 iter 60 value 82.412008 final value 82.411820 converged Fitting Repeat 2 # weights: 305 initial value 105.281862 iter 10 value 91.697121 iter 20 value 91.473425 iter 30 value 91.471243 final value 91.471082 converged Fitting Repeat 3 # weights: 305 initial value 106.321242 iter 10 value 94.057139 iter 20 value 93.329577 iter 30 value 93.269633 final value 93.269345 converged Fitting Repeat 4 # weights: 305 initial value 96.877869 iter 10 value 93.333382 iter 20 value 93.327415 iter 30 value 93.276877 iter 40 value 93.268993 iter 50 value 93.018849 iter 60 value 84.607341 iter 70 value 83.918875 iter 80 value 83.002688 iter 90 value 82.864953 iter 100 value 82.863880 final value 82.863880 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.865289 iter 10 value 94.057962 iter 20 value 94.052893 iter 30 value 93.329184 iter 30 value 93.329183 iter 30 value 93.329183 final value 93.329183 converged Fitting Repeat 1 # weights: 507 initial value 114.670713 iter 10 value 94.060492 iter 20 value 94.052937 iter 30 value 92.817358 iter 40 value 84.044256 iter 50 value 82.525363 iter 60 value 81.203261 iter 70 value 78.356789 iter 80 value 77.449123 iter 90 value 77.329284 iter 100 value 77.117019 final value 77.117019 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 102.179503 iter 10 value 93.337591 iter 20 value 93.333524 iter 30 value 91.904642 iter 40 value 91.815890 iter 50 value 91.775606 iter 60 value 91.773857 iter 70 value 91.772850 iter 80 value 89.388356 iter 90 value 88.885577 iter 100 value 87.615959 final value 87.615959 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 99.947847 iter 10 value 94.061462 iter 20 value 93.943672 iter 30 value 88.236032 iter 40 value 81.121771 iter 50 value 80.511218 iter 60 value 80.428131 final value 80.427886 converged Fitting Repeat 4 # weights: 507 initial value 106.777350 iter 10 value 93.974985 iter 20 value 93.337749 iter 30 value 93.336311 iter 40 value 93.334961 iter 50 value 93.030530 iter 60 value 82.624086 iter 70 value 79.728585 iter 80 value 77.556722 iter 90 value 77.236102 iter 100 value 77.054669 final value 77.054669 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.651281 iter 10 value 94.058624 iter 20 value 86.395279 iter 30 value 85.774306 iter 40 value 85.761722 iter 50 value 85.761110 final value 85.760852 converged Fitting Repeat 1 # weights: 103 initial value 94.994161 final value 94.466823 converged Fitting Repeat 2 # weights: 103 initial value 103.596528 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.258770 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 102.575442 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 94.792673 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 104.567714 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 99.343237 final value 94.466823 converged Fitting Repeat 3 # weights: 305 initial value 102.044003 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 95.646522 final value 94.466823 converged Fitting Repeat 5 # weights: 305 initial value 106.442001 iter 10 value 94.444296 iter 20 value 94.443245 final value 94.443244 converged Fitting Repeat 1 # weights: 507 initial value 99.989947 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 102.097443 iter 10 value 87.556885 iter 20 value 86.505112 iter 30 value 85.879323 iter 40 value 85.737570 iter 40 value 85.737570 iter 40 value 85.737570 final value 85.737570 converged Fitting Repeat 3 # weights: 507 initial value 96.905068 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 98.791513 iter 10 value 94.288300 iter 10 value 94.288300 iter 10 value 94.288300 final value 94.288300 converged Fitting Repeat 5 # weights: 507 initial value 107.708567 final value 94.129871 converged Fitting Repeat 1 # weights: 103 initial value 98.726635 iter 10 value 94.487629 iter 20 value 94.395037 iter 30 value 94.280179 iter 40 value 88.380275 iter 50 value 87.677840 iter 60 value 85.107135 iter 70 value 84.631494 iter 80 value 84.446639 iter 90 value 84.119239 iter 100 value 83.866719 final value 83.866719 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 101.371177 iter 10 value 94.492109 iter 20 value 94.427260 iter 30 value 87.240161 iter 40 value 84.432853 iter 50 value 84.133030 iter 60 value 83.885293 iter 70 value 83.851721 iter 80 value 83.827605 iter 90 value 83.757677 iter 100 value 83.748713 final value 83.748713 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 98.990419 iter 10 value 94.487950 iter 20 value 93.677390 iter 30 value 88.855256 iter 40 value 87.890619 iter 50 value 86.884991 iter 60 value 84.612869 iter 70 value 83.201459 iter 80 value 81.726136 iter 90 value 81.484029 iter 100 value 81.181310 final value 81.181310 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 101.141926 iter 10 value 94.127886 iter 20 value 87.508676 iter 30 value 87.053807 iter 40 value 84.338892 iter 50 value 81.791784 iter 60 value 81.683547 iter 70 value 81.336197 iter 80 value 81.179323 iter 90 value 80.782590 iter 100 value 80.735995 final value 80.735995 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 100.781919 iter 10 value 94.513126 iter 20 value 92.941802 iter 30 value 85.605017 iter 40 value 84.765160 iter 50 value 82.630826 iter 60 value 81.830508 iter 70 value 81.662249 iter 80 value 81.451238 iter 90 value 81.313363 iter 100 value 80.843184 final value 80.843184 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 118.340327 iter 10 value 94.740076 iter 20 value 94.429977 iter 30 value 92.722178 iter 40 value 84.580537 iter 50 value 82.975633 iter 60 value 82.540939 iter 70 value 81.254541 iter 80 value 80.144854 iter 90 value 79.914498 iter 100 value 79.908203 final value 79.908203 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 117.372484 iter 10 value 94.528123 iter 20 value 94.493260 iter 30 value 93.782507 iter 40 value 86.685284 iter 50 value 85.581914 iter 60 value 85.463753 iter 70 value 84.670613 iter 80 value 83.788654 iter 90 value 83.474575 iter 100 value 83.246853 final value 83.246853 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.182753 iter 10 value 93.867680 iter 20 value 90.480054 iter 30 value 85.844710 iter 40 value 84.650652 iter 50 value 83.525525 iter 60 value 83.383919 iter 70 value 83.355108 iter 80 value 83.088416 iter 90 value 82.381037 iter 100 value 81.942952 final value 81.942952 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 110.988132 iter 10 value 90.979738 iter 20 value 85.087974 iter 30 value 84.443248 iter 40 value 83.098834 iter 50 value 81.436692 iter 60 value 80.603892 iter 70 value 80.262155 iter 80 value 79.937846 iter 90 value 79.915894 iter 100 value 79.909595 final value 79.909595 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 109.061864 iter 10 value 94.228338 iter 20 value 85.768704 iter 30 value 82.620716 iter 40 value 82.486628 iter 50 value 81.418117 iter 60 value 80.985660 iter 70 value 79.818984 iter 80 value 78.829851 iter 90 value 78.695217 iter 100 value 78.634966 final value 78.634966 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 119.963323 iter 10 value 94.120924 iter 20 value 88.208641 iter 30 value 87.581224 iter 40 value 86.154164 iter 50 value 85.712313 iter 60 value 84.761400 iter 70 value 82.962400 iter 80 value 80.971569 iter 90 value 80.653740 iter 100 value 80.293234 final value 80.293234 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 125.627637 iter 10 value 95.151870 iter 20 value 87.788224 iter 30 value 86.386218 iter 40 value 86.101856 iter 50 value 85.788912 iter 60 value 83.911899 iter 70 value 82.198105 iter 80 value 80.654442 iter 90 value 79.723840 iter 100 value 79.622919 final value 79.622919 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 120.875265 iter 10 value 94.275832 iter 20 value 88.585290 iter 30 value 86.533525 iter 40 value 84.007381 iter 50 value 82.354888 iter 60 value 80.791323 iter 70 value 80.688344 iter 80 value 80.360576 iter 90 value 80.080602 iter 100 value 80.061314 final value 80.061314 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.193336 iter 10 value 94.549460 iter 20 value 86.388735 iter 30 value 84.619548 iter 40 value 84.314179 iter 50 value 83.973642 iter 60 value 83.685223 iter 70 value 83.630639 iter 80 value 83.584651 iter 90 value 83.501767 iter 100 value 83.434586 final value 83.434586 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 109.504354 iter 10 value 94.528475 iter 20 value 89.168804 iter 30 value 87.340248 iter 40 value 85.480177 iter 50 value 83.225906 iter 60 value 82.402966 iter 70 value 81.168431 iter 80 value 80.798239 iter 90 value 80.391173 iter 100 value 80.121248 final value 80.121248 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.853838 final value 94.485812 converged Fitting Repeat 2 # weights: 103 initial value 101.740760 iter 10 value 94.406473 iter 20 value 88.343126 iter 30 value 88.123846 iter 40 value 88.072927 iter 50 value 88.071744 iter 60 value 88.070815 iter 70 value 88.070682 iter 80 value 86.138830 iter 90 value 83.688899 iter 100 value 83.654051 final value 83.654051 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 95.723324 final value 94.485703 converged Fitting Repeat 4 # weights: 103 initial value 98.380330 iter 10 value 94.357611 iter 20 value 94.150143 iter 30 value 94.148686 iter 40 value 94.148313 iter 50 value 85.995663 iter 60 value 85.757093 iter 70 value 85.395710 iter 80 value 85.291331 iter 90 value 85.288521 iter 100 value 83.207569 final value 83.207569 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.197533 final value 94.485993 converged Fitting Repeat 1 # weights: 305 initial value 117.285234 iter 10 value 94.247579 iter 20 value 94.242051 iter 30 value 94.239325 iter 40 value 94.238423 iter 50 value 94.237683 iter 50 value 94.237683 iter 50 value 94.237683 final value 94.237683 converged Fitting Repeat 2 # weights: 305 initial value 105.192512 iter 10 value 93.572780 iter 20 value 93.569058 iter 30 value 93.568938 iter 40 value 91.186120 iter 50 value 91.175648 final value 91.123226 converged Fitting Repeat 3 # weights: 305 initial value 107.118420 iter 10 value 94.488821 iter 20 value 93.176219 iter 30 value 90.991759 iter 40 value 90.977140 iter 50 value 90.975911 final value 90.975908 converged Fitting Repeat 4 # weights: 305 initial value 95.032061 iter 10 value 94.486001 iter 20 value 94.462631 iter 30 value 84.002220 iter 40 value 83.118637 iter 50 value 83.115844 iter 60 value 83.115347 iter 70 value 83.114591 iter 80 value 81.883418 iter 90 value 81.723693 iter 100 value 81.723006 final value 81.723006 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 106.940691 iter 10 value 94.489741 iter 20 value 94.200577 iter 30 value 93.424072 iter 40 value 93.423534 final value 93.423482 converged Fitting Repeat 1 # weights: 507 initial value 98.031906 iter 10 value 94.474807 iter 20 value 94.468466 final value 94.467400 converged Fitting Repeat 2 # weights: 507 initial value 102.974292 iter 10 value 92.773449 iter 20 value 92.713606 iter 30 value 92.707856 iter 40 value 92.692627 iter 50 value 92.632442 iter 60 value 92.588991 iter 70 value 92.588394 iter 80 value 92.586923 iter 90 value 92.586407 iter 100 value 91.590379 final value 91.590379 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.745382 iter 10 value 94.492822 iter 20 value 94.476589 iter 30 value 91.418329 iter 40 value 82.396519 iter 50 value 81.562632 iter 60 value 81.412392 iter 70 value 81.412018 iter 80 value 80.834141 iter 90 value 80.667175 iter 100 value 80.662981 final value 80.662981 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 97.203454 iter 10 value 94.474923 iter 20 value 94.467481 final value 94.467065 converged Fitting Repeat 5 # weights: 507 initial value 95.185452 final value 94.492226 converged Fitting Repeat 1 # weights: 103 initial value 100.420106 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 106.478979 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.205472 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 100.470441 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 100.157122 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 95.603534 final value 93.523810 converged Fitting Repeat 2 # weights: 305 initial value 96.486271 iter 10 value 94.347316 iter 20 value 94.097559 iter 30 value 92.705175 iter 40 value 92.596994 iter 50 value 92.596215 final value 92.596211 converged Fitting Repeat 3 # weights: 305 initial value 99.063136 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 105.097856 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 97.600337 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 105.220857 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 116.305603 final value 94.275362 converged Fitting Repeat 3 # weights: 507 initial value 100.068461 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 116.129601 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 97.127952 iter 10 value 94.244149 final value 94.244048 converged Fitting Repeat 1 # weights: 103 initial value 103.376177 iter 10 value 94.488646 iter 20 value 93.644801 iter 30 value 86.299335 iter 40 value 85.178039 iter 50 value 84.265566 iter 60 value 84.110221 iter 70 value 82.363434 iter 80 value 81.726733 iter 90 value 81.613052 iter 100 value 81.611925 final value 81.611925 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 127.640818 iter 10 value 94.486518 iter 20 value 93.965623 iter 30 value 93.594076 iter 40 value 86.362996 iter 50 value 86.040692 iter 60 value 85.462003 iter 70 value 84.217791 iter 80 value 81.804069 iter 90 value 81.613964 final value 81.611616 converged Fitting Repeat 3 # weights: 103 initial value 97.897015 iter 10 value 94.488083 iter 20 value 93.881205 iter 30 value 89.289469 iter 40 value 86.569229 iter 50 value 85.276352 iter 60 value 83.891105 iter 70 value 82.466641 iter 80 value 81.749996 iter 90 value 81.638071 iter 100 value 81.611638 final value 81.611638 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 103.344919 iter 10 value 94.486579 iter 20 value 94.067348 iter 30 value 93.978916 iter 40 value 86.750675 iter 50 value 86.338944 iter 60 value 84.386893 iter 70 value 83.995988 final value 83.994992 converged Fitting Repeat 5 # weights: 103 initial value 101.029242 iter 10 value 94.206500 iter 20 value 93.842308 iter 30 value 84.876936 iter 40 value 84.149861 iter 50 value 83.952845 iter 60 value 83.889112 iter 70 value 83.684860 iter 80 value 83.600177 iter 90 value 82.701162 iter 100 value 81.446826 final value 81.446826 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 110.048664 iter 10 value 94.425261 iter 20 value 94.073840 iter 30 value 86.892138 iter 40 value 85.401043 iter 50 value 83.360392 iter 60 value 82.292869 iter 70 value 81.291723 iter 80 value 80.735209 iter 90 value 80.377278 iter 100 value 80.343624 final value 80.343624 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.876789 iter 10 value 87.991854 iter 20 value 84.812825 iter 30 value 84.300286 iter 40 value 83.726161 iter 50 value 83.281383 iter 60 value 83.102685 iter 70 value 83.080448 iter 80 value 83.044068 iter 90 value 82.927135 iter 100 value 82.257299 final value 82.257299 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 120.978816 iter 10 value 94.492323 iter 20 value 93.746359 iter 30 value 86.653495 iter 40 value 85.263746 iter 50 value 82.171029 iter 60 value 81.435253 iter 70 value 81.298116 iter 80 value 81.003450 iter 90 value 80.906345 iter 100 value 80.562507 final value 80.562507 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.970846 iter 10 value 94.491128 iter 20 value 94.026091 iter 30 value 87.363390 iter 40 value 86.212474 iter 50 value 84.865437 iter 60 value 84.313334 iter 70 value 82.261113 iter 80 value 81.610114 iter 90 value 81.528611 iter 100 value 81.408419 final value 81.408419 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 103.634522 iter 10 value 94.662283 iter 20 value 90.096067 iter 30 value 88.327043 iter 40 value 88.196930 iter 50 value 84.557655 iter 60 value 81.498035 iter 70 value 80.608154 iter 80 value 80.499667 iter 90 value 80.229691 iter 100 value 79.896258 final value 79.896258 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 117.566212 iter 10 value 94.281026 iter 20 value 87.087456 iter 30 value 84.687085 iter 40 value 83.849949 iter 50 value 82.250562 iter 60 value 81.386262 iter 70 value 80.645640 iter 80 value 80.437090 iter 90 value 80.308519 iter 100 value 80.135422 final value 80.135422 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.301677 iter 10 value 94.439853 iter 20 value 93.562214 iter 30 value 88.014655 iter 40 value 85.853865 iter 50 value 84.657651 iter 60 value 83.128284 iter 70 value 81.885543 iter 80 value 80.680322 iter 90 value 80.379104 iter 100 value 79.965572 final value 79.965572 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 107.179674 iter 10 value 94.344850 iter 20 value 90.957422 iter 30 value 84.975636 iter 40 value 84.400230 iter 50 value 81.616745 iter 60 value 81.314405 iter 70 value 81.304785 iter 80 value 81.274904 iter 90 value 81.182349 iter 100 value 80.538108 final value 80.538108 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 111.112213 iter 10 value 94.322443 iter 20 value 87.127327 iter 30 value 83.612182 iter 40 value 81.868943 iter 50 value 81.136485 iter 60 value 80.863221 iter 70 value 80.489546 iter 80 value 80.380273 iter 90 value 80.284829 iter 100 value 80.228028 final value 80.228028 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 126.919803 iter 10 value 95.977320 iter 20 value 93.816368 iter 30 value 93.448628 iter 40 value 90.973649 iter 50 value 85.902757 iter 60 value 84.843799 iter 70 value 82.656490 iter 80 value 81.610601 iter 90 value 80.927497 iter 100 value 80.590751 final value 80.590751 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.396022 iter 10 value 94.486050 final value 94.484409 converged Fitting Repeat 2 # weights: 103 initial value 99.756482 final value 94.485998 converged Fitting Repeat 3 # weights: 103 initial value 98.382883 iter 10 value 94.106278 iter 20 value 93.775836 iter 30 value 93.774446 iter 40 value 92.245098 iter 50 value 84.062154 iter 60 value 82.988494 iter 70 value 82.940564 iter 80 value 82.855840 iter 90 value 82.798869 iter 100 value 82.677358 final value 82.677358 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 103.417050 final value 94.485680 converged Fitting Repeat 5 # weights: 103 initial value 105.192505 final value 94.486090 converged Fitting Repeat 1 # weights: 305 initial value 102.436146 iter 10 value 94.280414 iter 20 value 94.015847 iter 30 value 91.770935 iter 40 value 91.330522 iter 50 value 91.096449 iter 60 value 91.082574 final value 91.082546 converged Fitting Repeat 2 # weights: 305 initial value 105.229650 iter 10 value 92.689103 iter 20 value 91.907997 iter 30 value 91.904900 iter 40 value 91.779921 iter 50 value 91.671981 final value 91.671221 converged Fitting Repeat 3 # weights: 305 initial value 139.323320 iter 10 value 94.489362 iter 20 value 94.484235 final value 94.484216 converged Fitting Repeat 4 # weights: 305 initial value 98.348321 iter 10 value 94.484495 iter 20 value 86.199444 final value 83.616918 converged Fitting Repeat 5 # weights: 305 initial value 107.800311 iter 10 value 94.488067 iter 20 value 94.430934 iter 30 value 93.624966 iter 40 value 92.334395 iter 50 value 91.242145 iter 60 value 91.241066 iter 70 value 91.240691 iter 80 value 91.240473 final value 91.240442 converged Fitting Repeat 1 # weights: 507 initial value 109.510919 iter 10 value 94.283574 iter 20 value 94.109116 iter 30 value 86.273772 iter 40 value 85.758298 final value 85.758191 converged Fitting Repeat 2 # weights: 507 initial value 100.100514 iter 10 value 93.957679 iter 20 value 93.936653 iter 30 value 93.927122 iter 40 value 93.775330 iter 50 value 91.536074 iter 60 value 84.958850 iter 70 value 82.532679 iter 80 value 80.093939 iter 90 value 80.058444 iter 100 value 79.945859 final value 79.945859 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 114.958110 iter 10 value 93.802698 iter 20 value 93.362284 iter 30 value 92.852331 iter 40 value 92.844007 iter 50 value 92.842820 iter 60 value 92.841424 iter 70 value 91.606700 iter 80 value 84.679098 iter 90 value 80.941214 iter 100 value 79.715821 final value 79.715821 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.066963 iter 10 value 93.710126 iter 20 value 93.703196 iter 30 value 91.393469 iter 40 value 85.658584 iter 50 value 84.019897 iter 60 value 83.732309 iter 70 value 83.729555 iter 80 value 83.656142 iter 90 value 82.998337 iter 100 value 82.498263 final value 82.498263 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 116.653011 iter 10 value 94.492526 iter 20 value 94.330416 iter 30 value 93.595281 final value 93.588944 converged Fitting Repeat 1 # weights: 103 initial value 121.366522 iter 10 value 113.393055 iter 20 value 109.059248 iter 30 value 109.056491 iter 40 value 109.054920 iter 50 value 106.675049 iter 60 value 106.656421 final value 106.656381 converged Fitting Repeat 2 # weights: 103 initial value 118.687599 final value 117.867603 converged Fitting Repeat 3 # weights: 103 initial value 121.499262 final value 117.891820 converged Fitting Repeat 4 # weights: 103 initial value 119.624327 final value 117.891976 converged Fitting Repeat 5 # weights: 103 initial value 123.389745 final value 117.892442 converged svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Fri Jul 12 21:55:24 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 17.473 1.202 24.248
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 17.761 | 0.605 | 18.398 | |
FreqInteractors | 0.074 | 0.004 | 0.078 | |
calculateAAC | 0.014 | 0.002 | 0.017 | |
calculateAutocor | 0.132 | 0.026 | 0.161 | |
calculateCTDC | 0.025 | 0.001 | 0.027 | |
calculateCTDD | 0.171 | 0.014 | 0.187 | |
calculateCTDT | 0.074 | 0.007 | 0.081 | |
calculateCTriad | 0.134 | 0.011 | 0.145 | |
calculateDC | 0.029 | 0.003 | 0.031 | |
calculateF | 0.092 | 0.003 | 0.095 | |
calculateKSAAP | 0.029 | 0.003 | 0.031 | |
calculateQD_Sm | 0.557 | 0.049 | 0.607 | |
calculateTC | 0.514 | 0.052 | 0.566 | |
calculateTC_Sm | 0.096 | 0.004 | 0.100 | |
corr_plot | 16.631 | 0.501 | 17.141 | |
enrichfindP | 0.170 | 0.027 | 8.034 | |
enrichfind_hp | 0.025 | 0.005 | 0.990 | |
enrichplot | 0.122 | 0.002 | 0.123 | |
filter_missing_values | 0 | 0 | 0 | |
getFASTA | 0.028 | 0.005 | 3.499 | |
getHPI | 0 | 0 | 0 | |
get_negativePPI | 0.001 | 0.001 | 0.001 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.001 | 0.000 | 0.001 | |
plotPPI | 0.025 | 0.002 | 0.027 | |
pred_ensembel | 5.968 | 0.479 | 4.553 | |
var_imp | 18.099 | 0.618 | 18.746 | |