Category
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Category.
Category Analysis
Bioconductor version: 3.9
A collection of tools for performing category (gene set enrichment) analysis.
Author: Robert Gentleman [aut], Seth Falcon [ctb], Deepayan Sarkar [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("Category")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Category")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Category")| Using Categories to Analyze Microarray Data | R Script | |
| Using Chromosome Bands as Categories | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, GO, GeneSetEnrichment, Pathways, Software |
| Version | 2.50.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | Artistic-2.0 |
| Depends | methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix |
| Imports | utils, stats, graph, RBGL, GSEABase, genefilter, annotate, DBI |
| System Requirements | |
| URL |
See More
| Suggests | EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db |
| Linking To | |
| Enhances | |
| Depends On Me | GOstats, PCpheno |
| Imports Me | categoryCompare, cellHTS2, eisa, gCMAP, interactiveDisplay, meshr, miRLAB, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools, scTensor |
| Suggests Me | BiocCaseStudies, GSEAlm, MmPalateMiRNA, qpgraph, RnBeads |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Category_2.50.0.tar.gz |
| Windows Binary | Category_2.50.0.zip |
| Mac OS X 10.11 (El Capitan) | Category_2.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Category |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Category |
| Bioc Package Browser | https://code.bioconductor.org/browse/Category/ |
| Package Short Url | https://bioconductor.org/packages/Category/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |