interactiveDisplay
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see interactiveDisplay.
Package for enabling powerful shiny web displays of Bioconductor objects
Bioconductor version: 3.9
The interactiveDisplay package contains the methods needed to generate interactive Shiny based display methods for Bioconductor objects.
Author: Shawn Balcome, Marc Carlson
Maintainer: Shawn Balcome <balc0022 at umn.edu>
Citation (from within R, enter
citation("interactiveDisplay")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("interactiveDisplay")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("interactiveDisplay")| interactiveDisplay: A package for enabling interactive visualization of Bioconductor objects | R Script | |
| Reference Manual |
Details
| biocViews | AnnotationData, Classification, DataRepresentation, GO, GUI, GeneExpression, Genetics, Microarray, Network, QualityControl, Sequencing, Software, Visualization |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), methods, BiocGenerics, grid |
| Imports | interactiveDisplayBase(>= 1.7.3), shiny, RColorBrewer, ggplot2, reshape2, plyr, gridSVG, XML, Category, AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, hgu95av2.db, knitr, GenomicRanges, SummarizedExperiment, GOstats, ggbio, GO.db, Gviz, rtracklayer, metagenomeSeq, gplots, vegan, Biobase |
| Linking To | |
| Enhances | rstudio |
| Depends On Me | |
| Imports Me | |
| Suggests Me | metagenomeSeq |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | interactiveDisplay_1.22.0.tar.gz |
| Windows Binary | interactiveDisplay_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | interactiveDisplay_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/interactiveDisplay |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/interactiveDisplay |
| Bioc Package Browser | https://code.bioconductor.org/browse/interactiveDisplay/ |
| Package Short Url | https://bioconductor.org/packages/interactiveDisplay/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |