geneplotter
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see geneplotter.
Graphics related functions for Bioconductor
Bioconductor version: 3.9
Functions for plotting genomic data
Author: R. Gentleman, Biocore
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("geneplotter")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("geneplotter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geneplotter")| How to assemble a chromLocation object | R Script | |
| Visualization of Microarray Data | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | Software, Visualization |
| Version | 1.62.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), methods, Biobase, BiocGenerics, lattice, annotate |
| Imports | AnnotationDbi, graphics, grDevices, grid, RColorBrewer, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | Rgraphviz, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db |
| Linking To | |
| Enhances | |
| Depends On Me | HD2013SGI, Hiiragi2013, HMMcopy, maEndToEnd, PGPC |
| Imports Me | biocGraph, DESeq, DESeq2, DEXSeq, ENmix, EnrichmentBrowser, flowQ, GSVA, IsoGeneGUI, JunctionSeq, MethylSeekR, RNAinteract, RNAither |
| Suggests Me | AgiMicroRna, BiocCaseStudies, biocGraph, Category, chimera, GOstats, Single.mTEC.Transcriptomes |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | geneplotter_1.62.0.tar.gz |
| Windows Binary | geneplotter_1.62.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | geneplotter_1.62.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/geneplotter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geneplotter |
| Bioc Package Browser | https://code.bioconductor.org/browse/geneplotter/ |
| Package Short Url | https://bioconductor.org/packages/geneplotter/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |