Mustafa Erhan Ozer
| Snapshot Date: 2024-12-30 13:00 -0500 (Mon, 30 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-02 12:04 -0500 (Thu, 02 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2024-12-31 02:41:04 -0500 (Tue, 31 Dec 2024) |
| EndedAt: 2024-12-31 02:45:47 -0500 (Tue, 31 Dec 2024) |
| EllapsedTime: 283.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 169792,4160,54552,2787,492,90865
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388743,6374,7295,1893,7941,4915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,10243,2030,104,4728,1543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 844,6775,130120,2919,51300,5406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1409,1734,54476,152078,105372280,253559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2308,10352,3995,4598,57048,4524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2629,2835,84334,4779,149775,55526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100,2155,5970,406937,2788,5584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 582,1769,3416,2847,1373,51206
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 652,5595,6521,5370,29843,7386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 111,64241,4282,6261,1557,10020
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23410,5473,7037,7347,6514,104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1353,51316,23409,43,8722,6678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6775,90865,51081,6934,3954,5188
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7098,5236,644974,51649,7026,23462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55340,79783,8743,23054,5367,56923
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6439,92935,2639,124976,130120,160287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5189,4143,54577,6338,2696,7098
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 138050,6720,4153,5595,627,7099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4967,5702,217,5592,4968,383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 221935,10250,175,9759,2678,5274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 796,5306,23175,2948,7515,5257
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,3158,91452,8714,6464,7409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4860,57380,51004,8803,9507,1493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91949,51144,655,3291,3562,5971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3557,79796,56652,10316,445,92667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10642,5617,55630,509,5071,55526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1646,6183,1807,7124,51092,1559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8799,7480,177,6811,7030,1593
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5054,54576,7284,51119,53346,1232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,941,1909,185,213,1268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790,8462,201305,3934,2581,2034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1508,2992,55283,3483,1182,11255
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132,650,10537,5243,344905,4000
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26235,9241,406938,51181,3304,200539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5162,55768,7297,793,55670,4694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2629,7132,189,7252,3673,2309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 471,4697,8841,51204,23038,55526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7319,29078,256471,8504,4925,793
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1591,125988,5792,10874,6789,8243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4654,4035,308,100,3483,2752
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79776,5950,10724,2055,84447,23556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1373,2694,10682,114814,4878,84334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6566,1514,842,10295,2678,51119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,2952,1813,63874,114814,4282
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8772,5962,2653,409,411,355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56052,2746,5507,7098,2739,4714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2584,3032,407011,3251,821,11213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5256,25828,6401,10891,84342,406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 846,5501,7515,84340,85446,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1443,100131801,2559,54575,1815,114548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2786,729230,389,84693,5824,3115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124976,4887,440503,6786,4899,255738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2235,3291,55526,9380,6445,5365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1348,5654,6009,406,2053,4780
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 201595,6356,156,25974,5473,406982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10965,4854,3159,644974,498,2683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55278,345,8202,10599,23304,29968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2475,6556,10423,22852,51082,6352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7840,708,1514,1401,10,6774
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 779,11232,89874,10559,64801,9779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8714,7292,10537,1277,85479,2260
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 153642,801,10221,2271,513,54148
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51082,406906,79736,7841,2064,54915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5162,64432,2647,7100,1678,4828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104,221935,2334,6789,4143,6382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 350,9429,5189,590,221935,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51128,128486,7057,9056,585,208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6356,3712,1337,9692,1346,23530
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 216,2690,3073,7409,152078,3479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5274,22933,2170,10682,3712,2539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9332,57128,155,275,2203,203859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7038,56623,50506,3929,151,10599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55486,211,4232,23411,3700,959
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5468,1644,5068,7320,3099,3284
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347,338,10295,929,7941,208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,55065,5515,84701,25915,1374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55699,6387,2146,5901,50506,200539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54675,2788,10316,7480,5365,1022
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10020,5828,3949,6448,4694,1348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10102,440503,85365,79934,1329,85446
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,2053,2592,79001,3155,5373
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5406,56623,2559,388962,326625,434
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10599,7345,2697,79783,1537,5826
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54802,79644,8879,6554,7084,81689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22868,3312,1910,255738,51441,55024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1789,4828,6445,5499,4718,54901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3934,10457,137682,9575,153,160287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7407,9997,6897,3489,498,27344
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51117,57176,7428,28234,56919,55902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 948,55970,4247,114548,479,3033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9512,8675,587,6514,6341,1281
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1786,859,10730,27247,2584,275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 87178,5009,130589,9388,216,9414
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63899,51478,5190,5052,3117,846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5167,2159,92667,10616,124976,5250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51611,54576,268,79633,5255,6720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23395,56259,6462,5590,3145,26175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50674,1339,200186,3170,153642,5327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51082,1071,116519,8195,5629,50484
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6356,3481,7424,6387,6505,11131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 367,51167,5971,3383,2992,406922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4886,29960,2308,123283,5241,2739
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,5274,3645,4716,23369,5860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1491,6448,341,130589,9380,10062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4049,2538,81034,7431,10965,6721
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4351,6770,57048,3931,9091,11232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 201305,3054,25915,6906,10128,4299
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6834,55699,5617,5350,51316,9021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9868,255308,6833,664,1605,2592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4700,836,9370,11095,5096,2184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5321,3172,640,7450,516,4790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5019,6261,55532,1734,6788,51206
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2876,51117,364,5184,3929,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10383,79731,1537,3551,3931,1806
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
65.324 1.470 66.899
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.706 | 0.127 | 2.346 | |