Mustafa Erhan Ozer
| Snapshot Date: 2025-01-19 12:27 -0500 (Sun, 19 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-20 12:17 -0500 (Mon, 20 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-01-20 05:12:29 -0500 (Mon, 20 Jan 2025) |
| EndedAt: 2025-01-20 05:18:19 -0500 (Mon, 20 Jan 2025) |
| EllapsedTime: 350.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 3717,1075,1373,5473,10352,56259
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4854,5967,7372,6383,2159,538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7840,1585,5078,111240474,1595,4968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9241,6462,7381,56919,133,85569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2696,5293,189,63931,15,1649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1029,221458,80331,64087,5256,4351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9868,5476,4668,2632,7018,2591
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51601,655,2948,2591,5660,1497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,23304,3351,2919,5499,3482
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5428,38,4306,6821,2495,5122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8471,1641,26119,2328,28951,3417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1363,10062,10682,92609,8473,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7287,153642,6374,216,3553,3242
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253943,2308,6868,158,5096,7385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4669,642489,1588,4247,4779,285848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 292,3685,2271,406913,1361,7132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 364,31,10938,4842,51601,8743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,1499,8813,55065,6262,3304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7347,5191,3158,3250,7466,7841
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54968,10891,2348,10537,3054,23274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1491,1801,85446,29928,6403,63899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3586,57128,11255,175,6536,85446
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27344,84649,824,116931,56052,7428
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27141,6517,537,100130015,51024,6571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23129,5743,4720,5406,462,26003
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3481,2100,3087,2793,1634,3586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5052,407009,2947,463,4318,6505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3174,776,1116,60528,23062,5236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84701,27344,1234,9945,3643,55034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 341,8877,9692,2875,8722,9429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3728,4311,1027,1346,7056,4760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,5781,2203,10935,3034,5501
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407009,5295,50507,155,6821,8050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,9512,1789,2729,2678,4716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2641,18,5369,599,5445,6183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 768239,9415,8813,796,1645,56052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3978,6392,55503,5860,1270,92935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7052,9698,10642,407024,5836,79783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 353500,7325,6382,92609,4524,1075
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283120,10875,6775,94235,325,4319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7350,8659,4729,158,1072,27429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387787,81704,2903,186,2118,80267
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4790,6901,134,558,842,80070
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 599,4779,54552,4598,5091,3708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10730,55644,23291,54549,2729,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10157,54210,654,9479,574447,4306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 35,563,3559,1361,34,5313
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133522,23474,6342,4299,1329,116228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 383,2597,9021,79158,6898,2548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 128486,5105,124976,10226,54802,476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 445,23417,409,51241,3570,51601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,9969,3710,8799,5901,283120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,4543,5184,57176,5213,644096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2793,581,5741,63931,54798,6890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3065,4232,3576,10753,5255,79644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,51117,7026,9420,6535,6908
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6868,79661,7915,5625,2166,3939
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7424,4233,1950,138050,85446,2798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4722,407004,6515,3308,6772,2147
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 859,391051,5830,150,6401,551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6938,2235,10000,63892,84274,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3486,9451,5068,5321,3062,5406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2729,169792,999,131669,9332,1282
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84062,11131,11096,26503,2944,55270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5584,1906,23600,79133,51649,3483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3375,1588,2784,65985,2720,1738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27232,1803,43,5190,2584,5126
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 175,4878,7466,4854,27249,407011
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3091,5214,22868,9919,3460,5167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3728,7840,7276,407021,3240,929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6609,5629,2693,51083,5195,1509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5428,344,3339,2101,10020,10682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29881,10166,3658,26119,462,10000
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5515,4843,4982,4357,23304,9241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1444,7421,79783,25974,53346,406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,5188,2591,15,6390,1586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10102,83693,2790,79661,4709,491
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1593,4118,34,493753,6519,5092
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25813,2235,104,3481,3077,2203
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5370,4144,7276,51083,347,23274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57505,2639,265,2516,212,407045
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91869,7220,10135,959,37,7391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2820,28957,8714,65080,1889,5293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3624,1543,166785,85476,84274,2166
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11035,7018,2113,4683,25828,9919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 801,2949,91452,23304,2152,410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1806,1607,1621,8743,407004,23129
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,4318,388962,356,4357,1718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10019,33,5255,9054,23062,249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5230,1593,256471,5447,7528,406906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,84693,3929,26003,10383,410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3813,2990,116519,1337,1353,351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6382,1356,57570,847,1571,858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124976,80207,335,6833,4700,51660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1281,6811,55818,768239,2739,2119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2180,6774,7384,5346,5257,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3479,8659,7078,3293,1203,158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6341,2538,2629,4502,56945,23054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55863,10875,3115,5972,2946,6352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23038,10243,427,340024,28957,83439
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1149,10753,7424,2689,4854,1558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3304,1356,189,56052,191,3938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6556,4780,7056,7054,9370,84572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10599,326625,10577,116931,4654,155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79053,55024,2572,7390,28951,130120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64116,7422,10195,9415,1175,104909134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,26060,6522,130120,256471,5571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 401,6389,5467,7172,6492,107075310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9370,9382,64689,857,2944,5288
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23291,5078,10965,55670,3554,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3077,2115,1340,64601,4790,10013
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5228,518,2767,5901,5409,15
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57620,2875,1409,5162,9409,3483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 18,3875,7386,91574,26291,3759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23062,729238,7407,5255,4233,326625
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
74.68 1.98 76.89
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.61 | 0.10 | 1.36 | |