Mustafa Erhan Ozer
| Snapshot Date: 2024-12-30 13:00 -0500 (Mon, 30 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-02 12:08 -0500 (Thu, 02 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-01-01 11:10:12 -0500 (Wed, 01 Jan 2025) |
| EndedAt: 2025-01-01 11:15:50 -0500 (Wed, 01 Jan 2025) |
| EllapsedTime: 338.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 203068,7347,158,6927,54896,537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 266,5443,886,4149,2158,5190
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1329,5288,3357,27010,8818,15
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2559,4314,2582,1737,283459,50674
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5444,80347,51,652,79133,3988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3663,1595,124976,7100,1859,1230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10841,6199,114548,284184,9698,9512
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1716,64131,3645,170302,3481,3949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7248,8462,2516,7036,5467,406982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3073,1675,435,388962,6775,51601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10165,5499,2788,55163,3483,729230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2688,63874,3312,84706,55858,3425
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1028,54106,10643,653,25915,1071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4729,7431,123283,63892,84833,388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9095,2118,4548,4547,2152,9479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 801,2695,10316,128486,7372,3779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 593,2539,84447,6721,407021,10128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1798,1606,10642,1769,1329,572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54344,3565,2548,89866,5465,151
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2787,3423,308,5329,2166,653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4988,463,790,1591,7919,6566
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 435,26235,348,87178,4864,54675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5584,7350,348,114548,84447,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3562,7252,4720,3482,5139,23129
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 147007,3312,200539,6519,3791,3383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 153642,7466,91942,2166,7167,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,64432,6261,487,491,4548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57017,10165,132,5367,3101,4000
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25813,284958,55343,486,3565,4524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4878,5369,51082,19,6391,55753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 537,5588,2539,6647,51128,8050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51119,11096,10457,5538,1558,1950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,3948,2475,10577,4780,1499
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 795,3875,53335,50507,26521,9919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54210,10891,25828,33,50674,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2904,10059,84701,57678,2984,6999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,55270,1650,55699,4544,26762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4700,57017,132,2006,31,5702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7376,54802,2108,1621,2647,2740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57215,4357,7037,5276,9091,169792
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4722,5236,3703,4594,7515,325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4803,123099,4286,3728,5538,10577
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,1585,2710,4232,3098,54148
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,1641,26060,53335,200186,2739
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4126,4779,4843,5277,116519,1650
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84334,2791,4864,85365,57817,10166
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80347,5730,31,4337,2693,356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3309,54549,2030,79776,435,685
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,4656,125988,5080,1813,593
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1355,1843,7289,801,15,2950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6582,840,388743,3954,1734,3060
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 93587,4968,506,2590,8050,79158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4709,158,406922,10229,3958,2806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2335,2646,7352,7297,23395,3728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6248,1524,5345,3759,2683,123099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 563,2280,10466,6383,2693,5972
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54931,191,231,859,80224,22868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5270,11095,3685,3570,4719,1798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7840,7409,401,54344,406,27125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5250,3101,4915,2641,1591,5445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51099,10991,5799,115286,2110,388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132158,885,617,5345,80201,249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3460,4544,376497,55863,55750,7018
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,7384,3358,5950,4089,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7407,4744,5331,570,10157,85479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5162,3692,11096,10000,51176,55863
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1200,55788,91574,5091,5176,54344
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80339,3931,10094,825,1361,1277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2305,6868,4887,56623,55065,2799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50814,5925,23516,23236,2588,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,6439,205327,80201,9370,6391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55753,186,498,19,496,79587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55005,4713,10753,116150,55967,8932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3073,105372280,2539,1327,6262,55503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83985,2791,8648,1182,1356,51099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1803,255308,361,650,353500,57085
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3030,9415,54577,627,3685,5019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 708,5091,1968,4855,79587,5498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9241,8473,5095,491,2864,175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1185,653509,5792,1442,213,316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387082,811,5563,255231,3712,3700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,3486,8803,491,2713,84334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2055,486,11096,9945,84833,1361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 384,55532,56938,790,2539,642489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2100,825,3283,217,10102,178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10891,8694,130589,2582,7381,6774
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407024,5162,57817,3156,11019,650
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54567,4899,5538,7391,3099,26088
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 958,356,6390,5306,4160,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2688,5406,4728,7099,3356,285362
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50506,7879,4318,5601,283120,2280
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,4286,24147,729238,5364,2793
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9429,51176,3119,4709,5313,3293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285,8942,4889,1636,11136,1595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51293,3251,627,3291,10020,4700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132001,4126,51548,5167,364,10642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2805,2303,10250,105372280,84275,2950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1345,1022,2990,3708,2937,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6770,1371,123283,10580,3717,291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2689,10682,6354,54205,9091,9241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2052,5581,5442,7409,406947,2806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56302,57128,5095,79783,4143,5713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3375,1634,9241,3113,9365,1716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1634,84317,1678,432369,93587,6890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 490,7941,2702,11093,821,7471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1348,79944,401,11232,55858,1585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23590,3099,30061,7052,2745,79053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5194,4988,8813,189,1489,23411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5740,54539,4040,3440,5053,201305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9927,25974,3773,10965,216,3552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 498,330,55858,9607,55699,1650
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6329,3479,538,2559,2571,7466
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2235,3638,388372,53335,56923,8694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5728,4314,51092,7390,55526,2643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3759,79934,1716,8879,26119,48
--> return NULL...
2025-01-01 11:15:40.253 R[15614:111082050] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
72.100 1.188 74.197
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.993 | 0.045 | 1.678 | |