BioC 3.5: CHECK report for clusterProfiler on veracruz2
This page was generated on 2017-08-16 13:29:13 -0400 (Wed, 16 Aug 2017).
clusterProfiler 3.4.4 Guangchuang Yu
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/clusterProfiler | Last Changed Rev: 130506 / Revision: 131943 | Last Changed Date: 2017-06-18 23:02:21 -0400 (Sun, 18 Jun 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  |
veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |  |
Summary
Package: clusterProfiler |
Version: 3.4.4 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings clusterProfiler_3.4.4.tar.gz |
StartedAt: 2017-08-16 01:07:11 -0400 (Wed, 16 Aug 2017) |
EndedAt: 2017-08-16 01:10:12 -0400 (Wed, 16 Aug 2017) |
EllapsedTime: 180.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: clusterProfiler.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings clusterProfiler_3.4.4.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/clusterProfiler.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘clusterProfiler/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘clusterProfiler’ version ‘3.4.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘clusterProfiler’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
groupGO 49.763 3.409 66.125
enrichKEGG 0.600 0.017 5.269
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
clusterProfiler.Rcheck/00install.out:
* installing *source* package ‘clusterProfiler’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (clusterProfiler)
clusterProfiler.Rcheck/clusterProfiler-Ex.timings:
name | user | system | elapsed
|
compareCluster | 0.002 | 0.000 | 0.001 |
|
enrichGO | 0.000 | 0.000 | 0.001 |
|
enrichKEGG | 0.600 | 0.017 | 5.269 |
|
groupGO | 49.763 | 3.409 | 66.125 |
|