BioC 3.5: CHECK report for clusterProfiler on tokay2
This page was generated on 2017-08-16 13:20:57 -0400 (Wed, 16 Aug 2017).
clusterProfiler 3.4.4 Guangchuang Yu
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/clusterProfiler | Last Changed Rev: 130506 / Revision: 131943 | Last Changed Date: 2017-06-18 23:02:21 -0400 (Sun, 18 Jun 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK |  |
veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |  |
Summary
Package: clusterProfiler
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Version: 3.4.4
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Command: rm -rf clusterProfiler.buildbin-libdir clusterProfiler.Rcheck && mkdir clusterProfiler.buildbin-libdir clusterProfiler.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=clusterProfiler.buildbin-libdir clusterProfiler_3.4.4.tar.gz >clusterProfiler.Rcheck\00install.out 2>&1 && cp clusterProfiler.Rcheck\00install.out clusterProfiler-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=clusterProfiler.buildbin-libdir --install="check:clusterProfiler-install.out" --force-multiarch --no-vignettes --timings clusterProfiler_3.4.4.tar.gz
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StartedAt: 2017-08-15 22:46:28 -0400 (Tue, 15 Aug 2017)
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EndedAt: 2017-08-15 22:51:23 -0400 (Tue, 15 Aug 2017)
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EllapsedTime: 294.3 seconds
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RetCode: 0
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Status: OK
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CheckDir: clusterProfiler.Rcheck
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Warnings: 0
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Command output
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### Running command:
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### rm -rf clusterProfiler.buildbin-libdir clusterProfiler.Rcheck && mkdir clusterProfiler.buildbin-libdir clusterProfiler.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=clusterProfiler.buildbin-libdir clusterProfiler_3.4.4.tar.gz >clusterProfiler.Rcheck\00install.out 2>&1 && cp clusterProfiler.Rcheck\00install.out clusterProfiler-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=clusterProfiler.buildbin-libdir --install="check:clusterProfiler-install.out" --force-multiarch --no-vignettes --timings clusterProfiler_3.4.4.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/clusterProfiler.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clusterProfiler/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'clusterProfiler' version '3.4.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'clusterProfiler' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
groupGO 43.35 2.94 46.28
enrichKEGG 2.96 0.64 6.19
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
groupGO 54.17 2.74 56.91
enrichKEGG 2.69 0.72 5.12
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
clusterProfiler.Rcheck/00install.out:
install for i386
* installing *source* package 'clusterProfiler' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'clusterProfiler' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'clusterProfiler' as clusterProfiler_3.4.4.zip
* DONE (clusterProfiler)
clusterProfiler.Rcheck/examples_i386/clusterProfiler-Ex.timings:
name | user | system | elapsed
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compareCluster | 0 | 0 | 0 |
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enrichGO | 0 | 0 | 0 |
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enrichKEGG | 2.96 | 0.64 | 6.19 |
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groupGO | 43.35 | 2.94 | 46.28 |
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clusterProfiler.Rcheck/examples_x64/clusterProfiler-Ex.timings:
name | user | system | elapsed
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compareCluster | 0 | 0 | 0 |
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enrichGO | 0 | 0 | 0 |
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enrichKEGG | 2.69 | 0.72 | 5.12 |
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groupGO | 54.17 | 2.74 | 56.91 |
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