BioC experimental data: CHECK report for MEDIPSData on windows2.bioconductor.org

Package: MEDIPSData

Version: 1.7.0

Command: rm -rf MEDIPSData.buildbin-libdir MEDIPSData.Rcheck && mkdir MEDIPSData.buildbin-libdir MEDIPSData.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MEDIPSData.buildbin-libdir MEDIPSData_1.7.0.tar.gz >MEDIPSData.Rcheck\00install.out 2>&1 && cp MEDIPSData.Rcheck\00install.out MEDIPSData-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MEDIPSData.buildbin-libdir --install="check:MEDIPSData-install.out" --force-multiarch --no-vignettes --timings MEDIPSData_1.7.0.tar.gz

StartedAt: 2015-10-24 12:36:09 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 12:36:31 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 21.7 seconds

RetCode: 0

Status:  OK

CheckDir: MEDIPSData.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MEDIPSData.buildbin-libdir MEDIPSData.Rcheck && mkdir MEDIPSData.buildbin-libdir MEDIPSData.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MEDIPSData.buildbin-libdir MEDIPSData_1.7.0.tar.gz >MEDIPSData.Rcheck\00install.out 2>&1 && cp MEDIPSData.Rcheck\00install.out MEDIPSData-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=MEDIPSData.buildbin-libdir --install="check:MEDIPSData-install.out" --force-multiarch --no-vignettes --timings MEDIPSData_1.7.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/MEDIPSData.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MEDIPSData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MEDIPSData' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MEDIPSData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 47.1Mb
  sub-directories of 1Mb or more:
    data     11.3Mb
    extdata  35.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'MEDIPS'
  Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [0s] OK
** running examples for arch 'x64' ... [0s] OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'c:/biocbld/bbs-3.3-data-experiment/meat/MEDIPSData.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'MEDIPSData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'MEDIPSData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEDIPSData' as MEDIPSData_1.7.0.zip
* DONE (MEDIPSData)

name	user	system	elapsed
CS	0	0	0
DE_Input	0	0	0
DE_MeDIP	0	0	0
hESCs_Input	0	0	0
hESCs_MeDIP	0	0	0
mart_gene	0	0	0
resultTable	0	0	0

name	user	system	elapsed
CS	0	0	0
DE_Input	0	0	0
DE_MeDIP	0	0	0
hESCs_Input	0	0	0
hESCs_MeDIP	0	0	0
mart_gene	0	0	0
resultTable	0	0	0