Hervé Pagès
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/DelayedArray |
| Branch: RELEASE_3_11 |
| Last Commit: 52230a4 |
| Last Changed Date: 2020-07-13 17:41:19 -0400 (Mon, 13 Jul 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:26 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE DelayedArray PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 445/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DelayedArray 0.14.1 Hervé Pagès
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: DelayedArray |
| Version: 0.14.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DelayedArray_0.14.1.tar.gz && rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.14.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DelayedArray_0.14.1.zip && rm DelayedArray_0.14.1.tar.gz DelayedArray_0.14.1.zip |
| StartedAt: 2020-10-16 17:03:39 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:05:05 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 85.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DelayedArray_0.14.1.tar.gz && rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.14.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DelayedArray_0.14.1.zip && rm DelayedArray_0.14.1.tar.gz DelayedArray_0.14.1.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 148k 100 148k 0 0 1820k 0 --:--:-- --:--:-- --:--:-- 2034k
install for i386
* installing *source* package 'DelayedArray' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DelayedArray.c -o R_init_DelayedArray.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c abind.c -o abind.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array_selection.c -o array_selection.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compress_atomic_vector.c -o compress_atomic_vector.o
compress_atomic_vector.c: In function 'C_encode_atomic_vector':
compress_atomic_vector.c:66:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_decode_atomic_vector':
compress_atomic_vector.c:73:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_compress_atomic_vector':
compress_atomic_vector.c:85:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_decompress_atomic_vector':
compress_atomic_vector.c:92:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgCMatrix_utils.c -o dgCMatrix_utils.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o dgCMatrix_utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DelayedArray.buildbin-libdir/00LOCK-DelayedArray/00new/DelayedArray/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'rowsum' in package 'DelayedArray'
Creating a new generic function for 'aperm' in package 'DelayedArray'
Creating a generic function for 'sweep' from package 'base' in package 'DelayedArray'
Creating a new generic function for 'apply' in package 'DelayedArray'
Creating a generic function for 'dnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'ppois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dlogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'plogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qlogis' from package 'stats' in package 'DelayedArray'
Creating a new generic function for 'rowMaxs' in package 'DelayedArray'
Creating a new generic function for 'colMaxs' in package 'DelayedArray'
Creating a new generic function for 'rowMins' in package 'DelayedArray'
Creating a new generic function for 'colMins' in package 'DelayedArray'
Creating a new generic function for 'rowRanges' in package 'DelayedArray'
Creating a new generic function for 'colRanges' in package 'DelayedArray'
** help
*** installing help indices
converting help for package 'DelayedArray'
finding HTML links ... done
Array-class html
ArrayGrid-class html
DelayedArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-class.Rd:96: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-class.Rd:205: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-class.Rd:207: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
DelayedArray-stats html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:90: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
DelayedArray-utils html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:83: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:84: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:84: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:103: file link 'Summary' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:118: file link 'is.na' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:118: file link '!' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:120: file link '%*%' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:135: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:138: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:139: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:139: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
DelayedMatrix-stats html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedMatrix-stats.Rd:79: file link 'rowSums' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedMatrix-stats.Rd:80: file link 'rowMaxs' in package 'matrixStats' does not exist and so has been treated as a topic
DelayedMatrix-utils html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedMatrix-utils.Rd:68: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
DelayedOp-class html
RealizationSink-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RealizationSink-class.Rd:62: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RealizationSink-class.Rd:88: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RealizationSink-class.Rd:90: file link 'HDF5-dump-management' in package 'HDF5Array' does not exist and so has been treated as a topic
RleArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:37: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:40: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:51: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:52: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:52: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:77: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:77: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:78: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:89: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
RleArraySeed-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArraySeed-class.Rd:48: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArraySeed-class.Rd:51: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArraySeed-class.Rd:58: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
SparseArraySeed-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/SparseArraySeed-class.Rd:73: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/SparseArraySeed-class.Rd:123: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
array_selection html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/array_selection.Rd:130: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/array_selection.Rd:189: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
bind-arrays html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/bind-arrays.Rd:40: file link 'rbind' in package 'base' does not exist and so has been treated as a topic
blockApply html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/blockApply.Rd:92: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/blockApply.Rd:93: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/blockApply.Rd:94: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
blockGrid html
chunkGrid html
dgCMatrix-utils html
extract_array html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/extract_array.Rd:38: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/extract_array.Rd:95: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
makeCappedVolumeBox html
mapToGrid html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/mapToGrid.Rd:84: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
read_block html
realize html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/realize.Rd:52: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
showtree html
simplify html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DelayedArray' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DelayedArray.c -o R_init_DelayedArray.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c abind.c -o abind.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array_selection.c -o array_selection.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compress_atomic_vector.c -o compress_atomic_vector.o
compress_atomic_vector.c: In function 'C_encode_atomic_vector':
compress_atomic_vector.c:66:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_decode_atomic_vector':
compress_atomic_vector.c:73:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_compress_atomic_vector':
compress_atomic_vector.c:85:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
compress_atomic_vector.c: In function 'C_decompress_atomic_vector':
compress_atomic_vector.c:92:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
return ans;
^~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgCMatrix_utils.c -o dgCMatrix_utils.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o dgCMatrix_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DelayedArray.buildbin-libdir/DelayedArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedArray' as DelayedArray_0.14.1.zip
* DONE (DelayedArray)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'DelayedArray' successfully unpacked and MD5 sums checked