Back to Multiple platform build/check report for BioC 3.11
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for DelayedArray on machv2

This page was generated on 2020-10-17 11:58:21 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE DelayedArray PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 445/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DelayedArray 0.14.1
Hervé Pagès
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/DelayedArray
Branch: RELEASE_3_11
Last Commit: 52230a4
Last Changed Date: 2020-07-13 17:41:19 -0400 (Mon, 13 Jul 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: DelayedArray
Version: 0.14.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL DelayedArray
StartedAt: 2020-10-16 16:13:22 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 16:14:20 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 57.6 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL DelayedArray
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘DelayedArray’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_DelayedArray.c -o R_init_DelayedArray.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c abind.c -o abind.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c array_selection.c -o array_selection.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c compress_atomic_vector.c -o compress_atomic_vector.o
compress_atomic_vector.c:66:9: warning: variable 'ans' is uninitialized when used here [-Wuninitialized]
        return ans;
               ^~~
compress_atomic_vector.c:64:10: note: initialize the variable 'ans' to silence this warning
        SEXP ans;
                ^
                 = NULL
compress_atomic_vector.c:73:9: warning: variable 'ans' is uninitialized when used here [-Wuninitialized]
        return ans;
               ^~~
compress_atomic_vector.c:71:10: note: initialize the variable 'ans' to silence this warning
        SEXP ans;
                ^
                 = NULL
compress_atomic_vector.c:85:9: warning: variable 'ans' is uninitialized when used here [-Wuninitialized]
        return ans;
               ^~~
compress_atomic_vector.c:83:10: note: initialize the variable 'ans' to silence this warning
        SEXP ans;
                ^
                 = NULL
compress_atomic_vector.c:92:9: warning: variable 'ans' is uninitialized when used here [-Wuninitialized]
        return ans;
               ^~~
compress_atomic_vector.c:90:10: note: initialize the variable 'ans' to silence this warning
        SEXP ans;
                ^
                 = NULL
4 warnings generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c dgCMatrix_utils.c -o dgCMatrix_utils.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o dgCMatrix_utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-DelayedArray/00new/DelayedArray/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘rowsum’ in package ‘DelayedArray’
Creating a new generic function for ‘aperm’ in package ‘DelayedArray’
Creating a generic function for ‘sweep’ from package ‘base’ in package ‘DelayedArray’
Creating a new generic function for ‘apply’ in package ‘DelayedArray’
Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a new generic function for ‘rowMaxs’ in package ‘DelayedArray’
Creating a new generic function for ‘colMaxs’ in package ‘DelayedArray’
Creating a new generic function for ‘rowMins’ in package ‘DelayedArray’
Creating a new generic function for ‘colMins’ in package ‘DelayedArray’
Creating a new generic function for ‘rowRanges’ in package ‘DelayedArray’
Creating a new generic function for ‘colRanges’ in package ‘DelayedArray’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DelayedArray)