Back to Multiple platform build/check report for BioC 3.11
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

CHECK report for DelayedArray on tokay2

This page was generated on 2020-10-17 11:56:26 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE DelayedArray PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 445/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DelayedArray 0.14.1
Hervé Pagès
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/DelayedArray
Branch: RELEASE_3_11
Last Commit: 52230a4
Last Changed Date: 2020-07-13 17:41:19 -0400 (Mon, 13 Jul 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: DelayedArray
Version: 0.14.1
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DelayedArray.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings DelayedArray_0.14.1.tar.gz
StartedAt: 2020-10-17 03:16:13 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 03:35:59 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 1185.8 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: DelayedArray.Rcheck
Warnings: 3

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DelayedArray.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings DelayedArray_0.14.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/DelayedArray.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DelayedArray/DESCRIPTION' ... OK
* this is package 'DelayedArray' version '0.14.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DelayedArray' can be installed ... WARNING
Found the following significant warnings:
  compress_atomic_vector.c:66:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  compress_atomic_vector.c:73:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  compress_atomic_vector.c:85:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  compress_atomic_vector.c:92:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-class.Rd:96: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-class.Rd:205: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-class.Rd:207: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:90: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:83: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:84: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:84: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:103: file link 'Summary' in package 'methods' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:118: file link 'is.na' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:118: file link '!' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:120: file link '%*%' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:135: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:138: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:139: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:139: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedMatrix-stats.Rd:79: file link 'rowSums' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedMatrix-stats.Rd:80: file link 'rowMaxs' in package 'matrixStats' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedMatrix-utils.Rd:68: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RealizationSink-class.Rd:62: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RealizationSink-class.Rd:88: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RealizationSink-class.Rd:90: file link 'HDF5-dump-management' in package 'HDF5Array' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:37: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:40: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:51: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:52: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:52: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:77: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:77: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:78: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:89: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArraySeed-class.Rd:48: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArraySeed-class.Rd:51: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArraySeed-class.Rd:58: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/SparseArraySeed-class.Rd:73: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/SparseArraySeed-class.Rd:123: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/array_selection.Rd:130: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/array_selection.Rd:189: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/bind-arrays.Rd:40: file link 'rbind' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/blockApply.Rd:92: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/blockApply.Rd:93: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/blockApply.Rd:94: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/extract_array.Rd:38: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/extract_array.Rd:95: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/mapToGrid.Rd:84: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
  Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/realize.Rd:52: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/DelayedArray.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'inst/doc' contains invalid file names:
  '02-Implementing_a_backend.Rmd' '01-Working_with_large_arrays.Rnw'
  '02-Implementing_a_backend.html' '01-Working_with_large_arrays.pdf'
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  'BiocGenerics:::replaceSlots' 'BiocGenerics:::testPackage'
  'S4Vectors:::.list.names' 'S4Vectors:::anyMissing'
  'S4Vectors:::anyMissingOrOutside' 'S4Vectors:::delete_NULLs'
  'S4Vectors:::diffWithInitialZero'
  'S4Vectors:::extract_positions_from_Rle' 'S4Vectors:::new_DataFrame'
  'S4Vectors:::prepare_objects_to_bind'
  'S4Vectors:::rep.int_along_ROWS' 'S4Vectors:::sapply_isNULL'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'multGrids'
Undocumented S4 methods:
  generic '[' and siglist 'DelayedArray,ANY,ANY,ANY'
  generic '[<-' and siglist 'DelayedArray,ANY,ANY,ANY'
  generic 'crossprod' and siglist 'ANY,DelayedMatrix'
  generic 'crossprod' and siglist 'DelayedMatrix,ANY'
  generic 'crossprod' and siglist 'DelayedMatrix,DelayedMatrix'
  generic 'crossprod' and siglist 'DelayedMatrix,missing'
  generic 'dimnames<-' and siglist 'DelayedArray,ANY'
  generic 'tcrossprod' and siglist 'ANY,DelayedMatrix'
  generic 'tcrossprod' and siglist 'DelayedMatrix,ANY'
  generic 'tcrossprod' and siglist 'DelayedMatrix,DelayedMatrix'
  generic 'tcrossprod' and siglist 'DelayedMatrix,missing'
  generic 'type<-' and siglist 'DelayedArray'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.11-bioc/R/library/DelayedArray/libs/i386/DelayedArray.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'C:/Users/biocbuild/bbs-3.11-bioc/R/library/DelayedArray/libs/x64/DelayedArray.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
RleArray-class      61.97  10.01   72.14
DelayedMatrix-utils 31.06   3.75   34.92
dgCMatrix-utils     22.41   1.18   37.81
DelayedArray-utils  13.40   1.41   19.73
DelayedArray-class   7.72   0.97    8.81
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
RleArray-class      56.16  10.41   66.92
DelayedMatrix-utils 33.16   2.36   35.59
dgCMatrix-utils     21.61   1.22   22.82
DelayedArray-utils  13.36   1.34   15.62
DelayedArray-class   8.41   0.91   21.15
DelayedArray-stats   2.61   0.55    5.49
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'run_unitTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'run_unitTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 WARNINGs, 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.11-bioc/meat/DelayedArray.Rcheck/00check.log'
for details.

Installation output

DelayedArray.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DelayedArray_0.14.1.tar.gz && rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.14.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DelayedArray_0.14.1.zip && rm DelayedArray_0.14.1.tar.gz DelayedArray_0.14.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  148k  100  148k    0     0  1820k      0 --:--:-- --:--:-- --:--:-- 2034k

install for i386

* installing *source* package 'DelayedArray' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DelayedArray.c -o R_init_DelayedArray.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c abind.c -o abind.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array_selection.c -o array_selection.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compress_atomic_vector.c -o compress_atomic_vector.o
compress_atomic_vector.c: In function 'C_encode_atomic_vector':
compress_atomic_vector.c:66:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  return ans;
         ^~~
compress_atomic_vector.c: In function 'C_decode_atomic_vector':
compress_atomic_vector.c:73:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  return ans;
         ^~~
compress_atomic_vector.c: In function 'C_compress_atomic_vector':
compress_atomic_vector.c:85:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  return ans;
         ^~~
compress_atomic_vector.c: In function 'C_decompress_atomic_vector':
compress_atomic_vector.c:92:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  return ans;
         ^~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgCMatrix_utils.c -o dgCMatrix_utils.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o dgCMatrix_utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DelayedArray.buildbin-libdir/00LOCK-DelayedArray/00new/DelayedArray/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'rowsum' in package 'DelayedArray'
Creating a new generic function for 'aperm' in package 'DelayedArray'
Creating a generic function for 'sweep' from package 'base' in package 'DelayedArray'
Creating a new generic function for 'apply' in package 'DelayedArray'
Creating a generic function for 'dnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'ppois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dlogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'plogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qlogis' from package 'stats' in package 'DelayedArray'
Creating a new generic function for 'rowMaxs' in package 'DelayedArray'
Creating a new generic function for 'colMaxs' in package 'DelayedArray'
Creating a new generic function for 'rowMins' in package 'DelayedArray'
Creating a new generic function for 'colMins' in package 'DelayedArray'
Creating a new generic function for 'rowRanges' in package 'DelayedArray'
Creating a new generic function for 'colRanges' in package 'DelayedArray'
** help
*** installing help indices
  converting help for package 'DelayedArray'
    finding HTML links ... done
    Array-class                             html  
    ArrayGrid-class                         html  
    DelayedArray-class                      html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-class.Rd:96: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-class.Rd:205: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-class.Rd:207: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    DelayedArray-stats                      html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-stats.Rd:90: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
    DelayedArray-utils                      html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:83: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:84: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:84: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:103: file link 'Summary' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:118: file link 'is.na' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:118: file link '!' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:120: file link '%*%' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:135: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:138: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:139: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedArray-utils.Rd:139: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
    DelayedMatrix-stats                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedMatrix-stats.Rd:79: file link 'rowSums' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedMatrix-stats.Rd:80: file link 'rowMaxs' in package 'matrixStats' does not exist and so has been treated as a topic
    DelayedMatrix-utils                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/DelayedMatrix-utils.Rd:68: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
    DelayedOp-class                         html  
    RealizationSink-class                   html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RealizationSink-class.Rd:62: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RealizationSink-class.Rd:88: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RealizationSink-class.Rd:90: file link 'HDF5-dump-management' in package 'HDF5Array' does not exist and so has been treated as a topic
    RleArray-class                          html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:37: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:40: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:51: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:52: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:52: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:77: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:77: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:78: file link 'RleList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArray-class.Rd:89: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
    RleArraySeed-class                      html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArraySeed-class.Rd:48: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArraySeed-class.Rd:51: file link 'DelayedArray' in package 'DelayedArray' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/RleArraySeed-class.Rd:58: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
    SparseArraySeed-class                   html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/SparseArraySeed-class.Rd:73: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/SparseArraySeed-class.Rd:123: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
    array_selection                         html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/array_selection.Rd:130: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/array_selection.Rd:189: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
    bind-arrays                             html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/bind-arrays.Rd:40: file link 'rbind' in package 'base' does not exist and so has been treated as a topic
    blockApply                              html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/blockApply.Rd:92: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/blockApply.Rd:93: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/blockApply.Rd:94: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    blockGrid                               html  
    chunkGrid                               html  
    dgCMatrix-utils                         html  
    extract_array                           html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/extract_array.Rd:38: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/extract_array.Rd:95: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    makeCappedVolumeBox                     html  
    mapToGrid                               html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/mapToGrid.Rd:84: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
    read_block                              html  
    realize                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpEpulel/R.INSTALL2984ff11e95/DelayedArray/man/realize.Rd:52: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
    showtree                                html  
    simplify                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DelayedArray' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DelayedArray.c -o R_init_DelayedArray.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c abind.c -o abind.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c array_selection.c -o array_selection.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compress_atomic_vector.c -o compress_atomic_vector.o
compress_atomic_vector.c: In function 'C_encode_atomic_vector':
compress_atomic_vector.c:66:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  return ans;
         ^~~
compress_atomic_vector.c: In function 'C_decode_atomic_vector':
compress_atomic_vector.c:73:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  return ans;
         ^~~
compress_atomic_vector.c: In function 'C_compress_atomic_vector':
compress_atomic_vector.c:85:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  return ans;
         ^~~
compress_atomic_vector.c: In function 'C_decompress_atomic_vector':
compress_atomic_vector.c:92:9: warning: 'ans' is used uninitialized in this function [-Wuninitialized]
  return ans;
         ^~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/S4Vectors/include'   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dgCMatrix_utils.c -o dgCMatrix_utils.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o dgCMatrix_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DelayedArray.buildbin-libdir/DelayedArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedArray' as DelayedArray_0.14.1.zip
* DONE (DelayedArray)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'DelayedArray' successfully unpacked and MD5 sums checked

Tests output

DelayedArray.Rcheck/tests_i386/run_unitTests.Rout


R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require("DelayedArray") || stop("unable to load DelayedArray package")
Loading required package: DelayedArray
Loading required package: stats4
Loading required package: matrixStats
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows


Attaching package: 'DelayedArray'

The following objects are masked from 'package:matrixStats':

    colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges

The following objects are masked from 'package:base':

    aperm, apply, rowsum

[1] TRUE
> DelayedArray:::.test()
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)

Attaching package: 'genefilter'

The following objects are masked from 'package:matrixStats':

    rowSds, rowVars

automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
Error in normarg_perm(perm, dim(seed)) : 'perm' must be an integer vector
Error in validObject(.Object) : invalid class "DelayedAperm" object: 
    'perm' cannot be an empty vector
Error in validObject(.Object) : invalid class "DelayedAperm" object: 
    only dimensions equal to 1 can be dropped
Error in validObject(.Object) : invalid class "DelayedAperm" object: 
    all non-NA values in 'perm' must be >= 1 and <= 'length(dim(a))'
Error in validObject(.Object) : invalid class "DelayedAperm" object: 
    only dimensions equal to 1 can be dropped
Error in normarg_dimnames(dimnames, seed_dim) : 
  the supplied 'dimnames' must be NULL or a list
Error in normarg_dimnames(dimnames, seed_dim) : 
  the supplied 'dimnames' must have one list element per dimension
Error in FUN(X[[i]], ...) : 
  each list element in the supplied 'dimnames' must be NULL or a
  character vector
Error in FUN(X[[i]], ...) : 
  length of 'dimnames[[1]]' (26) must equal the array extent (5)
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in match.fun(OP) : 'NULL' is not a function, character or symbol
Error in match.fun(OP) : 
  'list(NULL)' is not a function, character or symbol
Error in get(as.character(FUN), mode = "function", envir = envir) : 
  object 'not-an-existing-function' of mode 'function' was not found
Error in new_DelayedNaryIsoOp("<=", array(dim = 4:2), array(dim = 2:4)) : 
  non-conformable array-like objects
Error in normalizeNindex(Nindex, seed) : 
  'Nindex' must be a list with one list element per dimension in 'x'
Error in normalizeNindex(Nindex, seed) : 
  'Nindex' must be a list with one list element per dimension in 'x'
Error : subscript contains out-of-bounds indices
Error : subscript contains invalid names
Error : subscript contains out-of-bounds ranges
Error : subscript contains out-of-bounds ranges
Error in new_DelayedUnaryIsoOpStack(.TEST_SAS3, NULL) : 
  'OPS' must be a list
Error in FUN(X[[i]], ...) : 
  'OPS[[1L]]' is not a function, character or symbol
Error in get(as.character(FUN), mode = "function", envir = envir) : 
  object 'not-an-existing-function' of mode 'function' was not found
automatic block size set to 1e+07 bytes (was 1e+08)
automatic block size set to 1e+08 bytes (was 1e+07)


RUNIT TEST PROTOCOL -- Sat Oct 17 03:30:00 2020 
*********************************************** 
Number of test functions: 42 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
DelayedArray RUnit Tests - 42 test functions, 0 errors, 0 failures
Number of test functions: 42 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 283.35    4.39  288.00

DelayedArray.Rcheck/tests_x64/run_unitTests.Rout


R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require("DelayedArray") || stop("unable to load DelayedArray package")
Loading required package: DelayedArray
Loading required package: stats4
Loading required package: matrixStats
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows


Attaching package: 'DelayedArray'

The following objects are masked from 'package:matrixStats':

    colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges

The following objects are masked from 'package:base':

    aperm, apply, rowsum

[1] TRUE
> DelayedArray:::.test()
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 12 bytes (was 1e+08)
automatic block size set to 20 bytes (was 12)
automatic block size set to 50 bytes (was 20)
automatic block size set to 15000 bytes (was 50)
automatic block size set to 1e+08 bytes (was 15000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 24 bytes (was 30000)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)

Attaching package: 'genefilter'

The following objects are masked from 'package:matrixStats':

    rowSds, rowVars

automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
automatic block size set to 24 bytes (was 1e+08)
automatic block size set to 40 bytes (was 24)
automatic block size set to 100 bytes (was 40)
automatic block size set to 30000 bytes (was 100)
automatic block size set to 1e+08 bytes (was 30000)
Error in normarg_perm(perm, dim(seed)) : 'perm' must be an integer vector
Error in validObject(.Object) : invalid class "DelayedAperm" object: 
    'perm' cannot be an empty vector
Error in validObject(.Object) : invalid class "DelayedAperm" object: 
    only dimensions equal to 1 can be dropped
Error in validObject(.Object) : invalid class "DelayedAperm" object: 
    all non-NA values in 'perm' must be >= 1 and <= 'length(dim(a))'
Error in validObject(.Object) : invalid class "DelayedAperm" object: 
    only dimensions equal to 1 can be dropped
Error in normarg_dimnames(dimnames, seed_dim) : 
  the supplied 'dimnames' must be NULL or a list
Error in normarg_dimnames(dimnames, seed_dim) : 
  the supplied 'dimnames' must have one list element per dimension
Error in FUN(X[[i]], ...) : 
  each list element in the supplied 'dimnames' must be NULL or a
  character vector
Error in FUN(X[[i]], ...) : 
  length of 'dimnames[[1]]' (26) must equal the array extent (5)
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in seed(x) : 
  seed() is not supported on a DelayedArray object with multiple seeds at
  the moment. Note that you can check the number of seeds with nseed().
  You can use 'seedApply(x, identity)' to extract all the seeds as a
  list.
Error in (function (classes, fdef, mtable)  : 
  unable to find an inherited method for function 'is_noop' for signature '"DelayedNaryIsoOp"'
Error in match.fun(OP) : 'NULL' is not a function, character or symbol
Error in match.fun(OP) : 
  'list(NULL)' is not a function, character or symbol
Error in get(as.character(FUN), mode = "function", envir = envir) : 
  object 'not-an-existing-function' of mode 'function' was not found
Error in new_DelayedNaryIsoOp("<=", array(dim = 4:2), array(dim = 2:4)) : 
  non-conformable array-like objects
Error in normalizeNindex(Nindex, seed) : 
  'Nindex' must be a list with one list element per dimension in 'x'
Error in normalizeNindex(Nindex, seed) : 
  'Nindex' must be a list with one list element per dimension in 'x'
Error : subscript contains out-of-bounds indices
Error : subscript contains invalid names
Error : subscript contains out-of-bounds ranges
Error : subscript contains out-of-bounds ranges
Error in new_DelayedUnaryIsoOpStack(.TEST_SAS3, NULL) : 
  'OPS' must be a list
Error in FUN(X[[i]], ...) : 
  'OPS[[1L]]' is not a function, character or symbol
Error in get(as.character(FUN), mode = "function", envir = envir) : 
  object 'not-an-existing-function' of mode 'function' was not found
automatic block size set to 1e+07 bytes (was 1e+08)
automatic block size set to 1e+08 bytes (was 1e+07)


RUNIT TEST PROTOCOL -- Sat Oct 17 03:35:49 2020 
*********************************************** 
Number of test functions: 42 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
DelayedArray RUnit Tests - 42 test functions, 0 errors, 0 failures
Number of test functions: 42 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 343.35    3.95  348.25

Example timings

DelayedArray.Rcheck/examples_i386/DelayedArray-Ex.timings

nameusersystemelapsed
Array-class000
ArrayGrid-class0.830.000.83
DelayedArray-class7.720.978.81
DelayedArray-stats2.640.373.05
DelayedArray-utils13.40 1.4119.73
DelayedMatrix-stats3.320.874.21
DelayedMatrix-utils31.06 3.7534.92
RealizationSink-class1.060.131.37
RleArray-class61.9710.0172.14
SparseArraySeed-class0.760.781.55
array_selection000
bind-arrays000
blockApply0.020.000.01
blockGrid0.670.070.75
chunkGrid000
dgCMatrix-utils22.41 1.1837.81
extract_array000
makeCappedVolumeBox0.260.000.27
mapToGrid0.030.000.03
read_block0.170.000.47
realize2.380.633.45
showtree0.230.000.24
simplify0.660.010.67

DelayedArray.Rcheck/examples_x64/DelayedArray-Ex.timings

nameusersystemelapsed
Array-class000
ArrayGrid-class0.850.000.84
DelayedArray-class 8.41 0.9121.15
DelayedArray-stats2.610.555.49
DelayedArray-utils13.36 1.3415.62
DelayedMatrix-stats3.500.814.35
DelayedMatrix-utils33.16 2.3635.59
RealizationSink-class1.110.081.27
RleArray-class56.1610.4166.92
SparseArraySeed-class0.360.060.42
array_selection000
bind-arrays000
blockApply0.010.000.02
blockGrid0.670.080.77
chunkGrid000
dgCMatrix-utils21.61 1.2222.82
extract_array000
makeCappedVolumeBox0.280.000.28
mapToGrid0.020.000.02
read_block0.140.010.16
realize2.230.472.78
showtree0.250.000.25
simplify0.550.000.54