Package: reb

Version: 1.27.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings reb_1.27.0.tar.gz

StartedAt: 2011-02-24 21:27:53 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 21:29:06 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 73.1 seconds

RetCode: 0

Status:  OK

CheckDir: reb.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/reb.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'reb/DESCRIPTION' ... OK
* this is package 'reb' version '1.27.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'reb' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' calls not declared from:
  annotate golubEsets hu6800
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'reb' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c movbin.c -o movbin.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o reb.dll tmp.def movbin.o -LD:/biocbld/BBS-2˜1.8-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/reb.Rcheck/reb/libs/x64
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: plotrix
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (reb)

name	user	system	elapsed
absMax	0	0	0
buildChromCytoband	0.01	0.01	0.29
buildChromMap	0	0	0
cset2band	9.32	0.08	9.40
fromRevIsh	6.65	0.10	6.75
isAbnormal	0	0	0
mcr.eset	0.07	0.01	0.07
movbin	0.03	0.00	0.03
movt	1.18	0.00	1.19
naMean	0	0	0
regmap	0	0	0
revish	0.18	0.00	0.17
rmAmbigMappings	0.01	0.00	0.02
smoothByRegion	6.67	0.05	6.72
summarizeByRegion	4.22	0.00	4.22
tBinomTest	0	0	0
writeGFF3	0.22	0.00	0.22