BioC experimental data: CHECK report for Neve2006 on george2
This page was generated on 2013-10-08 16:07:09 -0700 (Tue, 08 Oct 2013).
Neve2006 0.1.16 VJ Carey
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013) | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/Neve2006 | Last Changed Rev: 2317 / Revision: 2510 | Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | [ OK ] | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: Neve2006 |
Version: 0.1.16 |
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings Neve2006_0.1.16.tar.gz |
StartedAt: 2013-10-08 13:04:55 -0700 (Tue, 08 Oct 2013) |
EndedAt: 2013-10-08 13:08:26 -0700 (Tue, 08 Oct 2013) |
EllapsedTime: 211.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Neve2006.Rcheck |
Warnings: 0 |
Command output
* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/Neve2006.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Neve2006/DESCRIPTION’ ... OK
* this is package ‘Neve2006’ version ‘0.1.16’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Neve2006’ can be installed ... [19s/20s] OK
* checking installed package size ... NOTE
installed size is 70.6Mb
sub-directories of 1Mb or more:
data 15.1Mb
extdata 54.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [13s/14s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/biocbuild/bbs-2.12-data-experiment/meat/Neve2006.Rcheck/00check.log’
for details.
Neve2006.Rcheck/00install.out:
* installing *source* package ‘Neve2006’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Neve2006)
Neve2006.Rcheck/Neve2006-Ex.timings:
name | user | system | elapsed
|
cghExSet-class | 1.736 | 0.052 | 1.852 |
|
logRatios | 0.456 | 0.028 | 0.660 |
|
neveCGHmatch | 0.864 | 0.032 | 0.946 |
|