Package: Gviz

Version: 1.3.14

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Gviz_1.3.14.tar.gz

StartedAt: 2013-03-25 02:59:49 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:05:55 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 365.3 seconds

RetCode: 0

Status:  OK

CheckDir: Gviz.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/Gviz.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Gviz/DESCRIPTION' ... OK
* this is package 'Gviz' version '1.3.14'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'Gviz' can be installed ... [38s/39s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [61s/61s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
SequenceTrack-class   8.704  1.445  10.317
GeneRegionTrack-class 7.975  0.146   8.130
AnnotationTrack-class 7.518  0.316   7.860
plotTracks            5.868  0.054   5.932
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'Gviz' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'subset' from package 'base' in package 'Gviz'
Creating a generic function for 'head' from package 'utils' in package 'Gviz'
** help
*** installing help indices
** building package indices
** installing vignettes
   'Gviz.Rnw' using 'UTF-8' 
** testing if installed package can be loaded
* DONE (Gviz)

name	user	system	elapsed
AlignedReadTrack-class	2.937	0.122	3.064
AnnotationTrack-class	7.518	0.316	7.860
BiomartGeneRegionTrack-class	3.777	0.089	3.886
DataTrack-class	1.302	0.085	1.389
DisplayPars-class	0.062	0.018	0.080
GeneRegionTrack-class	7.975	0.146	8.130
GenomeAxisTrack-class	4.289	0.051	4.345
IdeogramTrack-class	0.417	0.033	0.452
SequenceTrack-class	8.704	1.445	10.317
plotTracks	5.868	0.054	5.932