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Package 299/658HostnameOS / ArchBUILDCHECKBUILD BIN
Gviz 1.3.14
Florian Hahne
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Gviz
Last Changed Rev: 74217 / Revision: 74774
Last Changed Date: 2013-03-12 03:28:41 -0700 (Tue, 12 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: Gviz
Version: 1.3.14
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings Gviz_1.3.14.tar.gz
StartedAt: 2013-03-25 02:16:50 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:25:47 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 537.4 seconds
RetCode: 0
Status:  OK 
CheckDir: Gviz.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/Gviz.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Gviz/DESCRIPTION’ ... OK
* this is package ‘Gviz’ version ‘1.3.14’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Gviz’ can be installed ... [46s/47s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [81s/85s] OK
Examples with CPU or elapsed time > 5s
                               user system elapsed
SequenceTrack-class          12.809  1.148  15.607
GeneRegionTrack-class        11.685  0.036  11.743
AnnotationTrack-class        10.117  0.124  10.946
plotTracks                    7.212  0.028   8.090
GenomeAxisTrack-class         5.908  0.012   5.991
BiomartGeneRegionTrack-class  5.704  0.080   6.205
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Gviz.Rcheck/00install.out:

* installing *source* package ‘Gviz’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘subset’ from package ‘base’ in package ‘Gviz’
Creating a generic function for ‘head’ from package ‘utils’ in package ‘Gviz’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘Gviz.Rnw’ using ‘UTF-8’ 
** testing if installed package can be loaded
* DONE (Gviz)

Gviz.Rcheck/Gviz-Ex.timings:

nameusersystemelapsed
AlignedReadTrack-class3.3880.0883.474
AnnotationTrack-class10.117 0.12410.946
BiomartGeneRegionTrack-class5.7040.0806.205
DataTrack-class1.6840.0241.708
DisplayPars-class0.1600.0080.171
GeneRegionTrack-class11.685 0.03611.743
GenomeAxisTrack-class5.9080.0125.991
IdeogramTrack-class0.7000.0120.762
SequenceTrack-class12.809 1.14815.607
plotTracks7.2120.0288.090