Package: Gviz

Version: 1.3.14

Command: rm -rf Gviz.buildbin-libdir && mkdir Gviz.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Gviz.buildbin-libdir Gviz_1.3.14.tar.gz >Gviz-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=Gviz.buildbin-libdir --install="check:Gviz-install.out" --force-multiarch --no-vignettes --timings Gviz_1.3.14.tar.gz && mv Gviz.buildbin-libdir/* Gviz.Rcheck/ && rmdir Gviz.buildbin-libdir

StartedAt: 2013-03-25 02:55:03 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:01:15 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 372.7 seconds

RetCode: 0

Status:  OK

CheckDir: Gviz.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/Gviz.Rcheck'
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Gviz/DESCRIPTION' ... OK
* this is package 'Gviz' version '1.3.14'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Gviz' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [42s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
SequenceTrack-class   6.90   0.28    7.44
GeneRegionTrack-class 6.07   0.07    6.18
AnnotationTrack-class 5.29   0.19    5.66
** running examples for arch 'x64' ... [48s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
SequenceTrack-class   7.53   0.43    7.97
AnnotationTrack-class 7.00   0.30    7.33
GeneRegionTrack-class 6.63   0.01    6.65
plotTracks            5.82   0.02    5.85
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'Gviz' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'subset' from package 'base' in package 'Gviz'
Creating a generic function for 'head' from package 'utils' in package 'Gviz'
** help
*** installing help indices
** building package indices
** installing vignettes
   'Gviz.Rnw' using 'UTF-8' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'Gviz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Gviz' as Gviz_1.3.14.zip
* DONE (Gviz)