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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 103/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
graph1.15.12Seth FalconLast Changed Date: 2007-08-23 07:56:31 -0700 Last Changed Rev: 26609 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: graph |
Version: 1.15.12 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check graph_1.15.12.tar.gz |
RetCode: 0 |
Time: 102.5 seconds |
Status: WARNINGS |
CheckDir: graph.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/graph.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'graph/DESCRIPTION' ... OK * this is package 'graph' version '1.15.12' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'graph' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented S4 classes: edgeSet edgeSetAM edgeSetNEL multiGraph Undocumented S4 methods: generic 'edgemode' and siglist 'edgeSet' generic 'edges' and siglist 'multiGraph,missing' generic 'edges' and siglist 'multiGraph,character' generic 'edges' and siglist 'edgeSetAM,character' generic 'edges' and siglist 'edgeSetNEL,character' generic 'isDirected' and siglist 'multiGraph' generic 'isDirected' and siglist 'edgeSet' generic 'nodes' and siglist 'multiGraph' generic 'nodes' and siglist 'edgeSetAM' generic 'numEdges' and siglist 'multiGraph' generic 'numEdges' and siglist 'edgeSetAM' generic 'numNodes' and siglist 'multiGraph' generic 'show' and siglist 'multiGraph' generic 'show' and siglist 'edgeSet' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating graph-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating graph-manual.tex ... OK * checking graph-manual.tex ... OK WARNING: There was 1 warning, see /extra/loc/biocbuild/bbs-2.1-bioc/meat/graph.Rcheck/00check.log for details
graph.Rcheck/00install.out:
* Installing *source* package 'graph' ... ** libs gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c graph.c -o graph.o gcc -std=gnu99 -shared -L/usr/local/lib -o graph.so graph.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'graph' Formats: text html latex example DFS text html latex example IMCA text html latex example acc-methods text html latex example addEdge text html latex example addNode text html latex example adj-methods text html latex example apoptosisGraph text html latex example attrData-class text html latex example attrDataItem-methods text html latex attrDefaults-methods text html latex aveNumEdges text html latex example biocRepos text html latex example boundary text html latex example buildRepDepGraph text html latex example calcProb text html latex example calcSumProb text html latex example clearNode text html latex example clusterGraph-class text html latex example clusteringCoefficient-methods text html latex example combineNodes text html latex example distGraph-class text html latex example duplicatedEdges text html latex example edgeData-methods text html latex edgeDataDefaults-methods text html latex edgeMatrix text html latex example edgeWeights text html latex example fromGXL-methods text html latex example graph-class text html latex example graph2SparseM text html latex example graphAM-class text html latex example graphExamples text html latex example graphNEL-class text html latex example inEdges text html latex example internal text html latex isAdjacent-methods text html latex isDirected-methods text html latex listEdges text html latex example matrix2Graph text html latex example mostEdges text html latex example nodeData-methods text html latex nodeDataDefaults-methods text html latex numNoEdges text html latex example randomEGraph text html latex example randomGraph text html latex example randomNodeGraph text html latex example removeEdge text html latex example removeNode text html latex example reverseEdgeDirections text html latex example simpleEdge-class text html latex example standardLabeling text html latex example subGraph text html latex example toDotR-methods text html latex example ugraph text html latex example validGraph text html latex example write.tlp text html latex ** building package indices ... * DONE (graph)