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| IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
| Package 103/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
graph1.15.12Seth FalconLast Changed Date: 2007-08-23 07:56:31 -0700 Last Changed Rev: 26609 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
| wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
| pitt | Mac OS X (10.4.10) | i386 | OK | [ WARNINGS ] | OK |
| Package: graph |
| Version: 1.15.12 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check graph_1.15.12.tar.gz |
| RetCode: 0 |
| Time: 58.9 seconds |
| Status: WARNINGS |
| CheckDir: graph.Rcheck |
| Warnings: 1 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/graph.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-10 r42465) * checking for file 'graph/DESCRIPTION' ... OK * this is package 'graph' version '1.15.12' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'graph' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented S4 classes: edgeSet edgeSetAM edgeSetNEL multiGraph Undocumented S4 methods: generic 'edgemode' and siglist 'edgeSet' generic 'edges' and siglist 'multiGraph,missing' generic 'edges' and siglist 'multiGraph,character' generic 'edges' and siglist 'edgeSetAM,character' generic 'edges' and siglist 'edgeSetNEL,character' generic 'isDirected' and siglist 'multiGraph' generic 'isDirected' and siglist 'edgeSet' generic 'nodes' and siglist 'multiGraph' generic 'nodes' and siglist 'edgeSetAM' generic 'numEdges' and siglist 'multiGraph' generic 'numEdges' and siglist 'edgeSetAM' generic 'numNodes' and siglist 'multiGraph' generic 'show' and siglist 'multiGraph' generic 'show' and siglist 'edgeSet' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating graph-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating graph-manual.tex ... OK * checking graph-manual.tex ... OK WARNING: There was 1 warning, see /Users/biocbuild/bbs-2.1-bioc/meat/graph.Rcheck/00check.log for details
graph.Rcheck/00install.out:
* Installing *source* package 'graph' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -Wall -std=gnu99 -march=nocona -c graph.c -o graph.o
gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c graph.c -o graph.o
gcc-4.0 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'graph'
Formats: text html latex example
DFS text html latex example
IMCA text html latex example
acc-methods text html latex example
addEdge text html latex example
addNode text html latex example
adj-methods text html latex example
apoptosisGraph text html latex example
attrData-class text html latex example
attrDataItem-methods text html latex
attrDefaults-methods text html latex
aveNumEdges text html latex example
biocRepos text html latex example
boundary text html latex example
buildRepDepGraph text html latex example
calcProb text html latex example
calcSumProb text html latex example
clearNode text html latex example
clusterGraph-class text html latex example
clusteringCoefficient-methods text html latex example
combineNodes text html latex example
distGraph-class text html latex example
duplicatedEdges text html latex example
edgeData-methods text html latex
edgeDataDefaults-methods text html latex
edgeMatrix text html latex example
edgeWeights text html latex example
fromGXL-methods text html latex example
graph-class text html latex example
graph2SparseM text html latex example
graphAM-class text html latex example
graphExamples text html latex example
graphNEL-class text html latex example
inEdges text html latex example
internal text html latex
isAdjacent-methods text html latex
isDirected-methods text html latex
listEdges text html latex example
matrix2Graph text html latex example
mostEdges text html latex example
nodeData-methods text html latex
nodeDataDefaults-methods text html latex
numNoEdges text html latex example
randomEGraph text html latex example
randomGraph text html latex example
randomNodeGraph text html latex example
removeEdge text html latex example
removeNode text html latex example
reverseEdgeDirections text html latex example
simpleEdge-class text html latex example
standardLabeling text html latex example
subGraph text html latex example
toDotR-methods text html latex example
ugraph text html latex example
validGraph text html latex example
write.tlp text html latex
** building package indices ...
* DONE (graph)