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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 103/247HostnameOSArchBUILDCHECKBUILD BIN

graph

1.15.12

Seth Falcon
Last Changed Date: 2007-08-23 07:56:31 -0700
Last Changed Rev: 26609
lamb1 Linux (SUSE 10.1) x86_64  OK [ WARNINGS ]
wellington Linux (SUSE 9.2) i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  WARNINGS  OK 
pitt Mac OS X (10.4.10) i386  OK  WARNINGS  OK 
Package: graph
Version: 1.15.12
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check graph_1.15.12.tar.gz
RetCode: 0
Time: 38.5 seconds
Status: WARNINGS
CheckDir: graph.Rcheck
Warnings: 1

Command output

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/graph.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.15.12'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 classes:
  edgeSet edgeSetAM edgeSetNEL multiGraph
Undocumented S4 methods:
  generic 'edgemode' and siglist 'edgeSet'
  generic 'edges' and siglist 'multiGraph,missing'
  generic 'edges' and siglist 'multiGraph,character'
  generic 'edges' and siglist 'edgeSetAM,character'
  generic 'edges' and siglist 'edgeSetNEL,character'
  generic 'isDirected' and siglist 'multiGraph'
  generic 'isDirected' and siglist 'edgeSet'
  generic 'nodes' and siglist 'multiGraph'
  generic 'nodes' and siglist 'edgeSetAM'
  generic 'numEdges' and siglist 'multiGraph'
  generic 'numEdges' and siglist 'edgeSetAM'
  generic 'numNodes' and siglist 'multiGraph'
  generic 'show' and siglist 'multiGraph'
  generic 'show' and siglist 'edgeSet'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating graph-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating graph-manual.tex ... OK
* checking graph-manual.tex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/bbs-2.1-bioc/meat/graph.Rcheck/00check.log
for details

graph.Rcheck/00install.out:

* Installing *source* package 'graph' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c graph.c -o graph.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o graph.so graph.o   -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'graph'
     Formats: text html latex example 
  DFS                               text    html    latex   example
  IMCA                              text    html    latex   example
  acc-methods                       text    html    latex   example
  addEdge                           text    html    latex   example
  addNode                           text    html    latex   example
  adj-methods                       text    html    latex   example
  apoptosisGraph                    text    html    latex   example
  attrData-class                    text    html    latex   example
  attrDataItem-methods              text    html    latex
  attrDefaults-methods              text    html    latex
  aveNumEdges                       text    html    latex   example
  biocRepos                         text    html    latex   example
  boundary                          text    html    latex   example
  buildRepDepGraph                  text    html    latex   example
  calcProb                          text    html    latex   example
  calcSumProb                       text    html    latex   example
  clearNode                         text    html    latex   example
  clusterGraph-class                text    html    latex   example
  clusteringCoefficient-methods     text    html    latex   example
  combineNodes                      text    html    latex   example
  distGraph-class                   text    html    latex   example
  duplicatedEdges                   text    html    latex   example
  edgeData-methods                  text    html    latex
  edgeDataDefaults-methods          text    html    latex
  edgeMatrix                        text    html    latex   example
  edgeWeights                       text    html    latex   example
  fromGXL-methods                   text    html    latex   example
  graph-class                       text    html    latex   example
  graph2SparseM                     text    html    latex   example
  graphAM-class                     text    html    latex   example
  graphExamples                     text    html    latex   example
  graphNEL-class                    text    html    latex   example
  inEdges                           text    html    latex   example
  internal                          text    html    latex
  isAdjacent-methods                text    html    latex
  isDirected-methods                text    html    latex
  listEdges                         text    html    latex   example
  matrix2Graph                      text    html    latex   example
  mostEdges                         text    html    latex   example
  nodeData-methods                  text    html    latex
  nodeDataDefaults-methods          text    html    latex
  numNoEdges                        text    html    latex   example
  randomEGraph                      text    html    latex   example
  randomGraph                       text    html    latex   example
  randomNodeGraph                   text    html    latex   example
  removeEdge                        text    html    latex   example
  removeNode                        text    html    latex   example
  reverseEdgeDirections             text    html    latex   example
  simpleEdge-class                  text    html    latex   example
  standardLabeling                  text    html    latex   example
  subGraph                          text    html    latex   example
  toDotR-methods                    text    html    latex   example
  ugraph                            text    html    latex   example
  validGraph                        text    html    latex   example
  write.tlp                         text    html    latex
** building package indices ...
* DONE (graph)