| Back to Long Tests report for BioC 3.20 |
This page was generated on 2024-06-15 23:55 -0400 (Sat, 15 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4685 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4420 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4400 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 6/32 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.11.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | |||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | ERROR | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.11.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.11.0.tar.gz |
| StartedAt: 2024-06-15 16:16:03 -0400 (Sat, 15 Jun 2024) |
| EndedAt: 2024-06-15 16:25:32 -0400 (Sat, 15 Jun 2024) |
| EllapsedTime: 569.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: biodbChebi.Rcheck |
| Warnings: NA |
biodbChebi.Rcheck/tests/testthat.Rout.fail
R version 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-06-15 16:22:16.814][biodb::testContext]
biodb.INFO [2024-06-15 16:22:16.828][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:22:16.831][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-06-15 16:22:16.833][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:22:16.835][biodb::testContext]
biodb.INFO [2024-06-15 16:22:16.845][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:22:16.850][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-15 16:22:16.874][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:22:16.876][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-15 16:22:16.878][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-15 16:22:16.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:16.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:16.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:16.884][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-15 16:22:16.923][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-15 16:22:16.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:16.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:16.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:16.931][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-15 16:22:16.932][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-15 16:22:16.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:16.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:16.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:16.939][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-15 16:22:16.941][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-15 16:22:16.943][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-15 16:22:16.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:16.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:16.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:16.949][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-15 16:22:16.951][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-15 16:22:16.952][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-15 16:22:16.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:16.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:16.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:16.959][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-15 16:22:16.961][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-15 16:22:16.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:16.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:16.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:16.967][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-15 16:22:16.969][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-15 16:22:16.970][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-15 16:22:16.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:16.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:16.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:16.978][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-15 16:22:16.980][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-15 16:22:16.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:16.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:16.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:16.987][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-15 16:22:16.989][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-15 16:22:16.991][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-15 16:22:16.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:16.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:16.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:16.998][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:22:17.000][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-15 16:22:17.003][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-15 16:22:17.005][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-15 16:22:17.007][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-15 16:22:17.009][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-15 16:22:17.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.015][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-15 16:22:17.017][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-15 16:22:17.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.023][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-15 16:22:17.025][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-15 16:22:17.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.031][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-15 16:22:17.033][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-15 16:22:17.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.040][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-15 16:22:17.042][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-15 16:22:17.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.048][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-15 16:22:17.050][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-15 16:22:17.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.057][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:22:17.058][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-15 16:22:17.063][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-15 16:22:17.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.070][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-15 16:22:17.072][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-15 16:22:17.074][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-15 16:22:17.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.083][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-15 16:22:17.127][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.151][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-15 16:22:17.154][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.156][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:22:17.158][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.160][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.162][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.164][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.165][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:22:17.167][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:22:17.169][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.171][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-15 16:22:17.173][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:22:17.175][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.176][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.178][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:22:17.178][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:22:17.178][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:22:17.178][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:22:17.178][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:22:17.180][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:22:17.181][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:17.183][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:17.185][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:22:17.187][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:17.197][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:17.199][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.201][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.203][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:22:17.204][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:22:17.206][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.208][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.210][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-15 16:22:17.213][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.215][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:22:17.217][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.219][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:22:17.221][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.222][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.224][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.226][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.228][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:22:17.229][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:22:17.231][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.233][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-15 16:22:17.235][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:22:17.236][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.238][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.240][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:22:17.240][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:22:17.240][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:22:17.240][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:22:17.240][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:22:17.242][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:22:17.243][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:17.245][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:17.247][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:22:17.248][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:17.250][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:17.252][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.253][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.255][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:22:17.257][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:22:17.258][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.260][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.262][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-15 16:22:17.265][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.267][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-15 16:22:17.269][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.270][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:22:17.272][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.274][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.275][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.277][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.279][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:22:17.281][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:22:17.282][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.283][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-15 16:22:17.285][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:22:17.286][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.287][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.288][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.289][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:22:17.291][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:17.292][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:17.293][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:22:17.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:17.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:17.297][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.298][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.299][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:22:17.300][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:22:17.301][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.303][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.304][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-15 16:22:17.307][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.309][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:22:17.310][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.312][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:22:17.314][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.315][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.317][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.319][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.321][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:22:17.322][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:22:17.324][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.326][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-15 16:22:17.328][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:22:17.329][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.331][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.333][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.335][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:22:17.337][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:17.339][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:17.340][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:22:17.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:17.344][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:17.345][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.347][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.349][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:22:17.351][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:22:17.353][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.355][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:22:17.359][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:22:17.361][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.505][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-15 16:22:17.512][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-15 16:22:17.515][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-15 16:22:17.518][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-15 16:22:17.520][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-15 16:22:17.523][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-15 16:22:17.526][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-15 16:22:17.529][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-15 16:22:17.531][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-15 16:22:17.534][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-15 16:22:17.537][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-15 16:22:17.540][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-15 16:22:17.543][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-15 16:22:17.545][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-15 16:22:17.548][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-15 16:22:17.550][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-15 16:22:17.552][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-15 16:22:17.554][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-15 16:22:17.555][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-15 16:22:17.557][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-15 16:22:17.559][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-15 16:22:17.561][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-15 16:22:17.563][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-15 16:22:17.566][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-15 16:22:17.568][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-15 16:22:17.570][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-15 16:22:17.573][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-15 16:22:17.575][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-15 16:22:17.577][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-15 16:22:17.580][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-15 16:22:17.582][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-15 16:22:17.584][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-15 16:22:17.587][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-15 16:22:17.589][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-15 16:22:17.591][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-15 16:22:17.594][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-15 16:22:17.596][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-15 16:22:17.598][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-15 16:22:17.600][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-15 16:22:17.602][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-15 16:22:17.604][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-15 16:22:17.607][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-15 16:22:17.609][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-15 16:22:17.611][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-15 16:22:17.612][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-15 16:22:17.614][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-15 16:22:17.616][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-15 16:22:17.618][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-15 16:22:17.620][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-15 16:22:17.623][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-15 16:22:17.626][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-15 16:22:17.628][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-15 16:22:17.630][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-15 16:22:17.632][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-15 16:22:17.633][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-15 16:22:17.635][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-15 16:22:17.637][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-15 16:22:17.639][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-15 16:22:17.640][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-15 16:22:17.642][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-15 16:22:17.644][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-15 16:22:17.645][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-15 16:22:17.647][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-15 16:22:17.649][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-15 16:22:17.650][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-15 16:22:17.653][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-15 16:22:17.654][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-15 16:22:17.657][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-15 16:22:17.659][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-15 16:22:17.661][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-15 16:22:17.664][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-15 16:22:17.666][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-15 16:22:17.668][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-15 16:22:17.671][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-15 16:22:17.673][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-15 16:22:17.675][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-15 16:22:17.677][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-15 16:22:17.680][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-15 16:22:17.682][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-15 16:22:17.685][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-15 16:22:17.687][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-15 16:22:17.689][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-15 16:22:17.691][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-15 16:22:17.740][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-15 16:22:17.744][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:22:17.748][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:22:17.750][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.754][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:22:17.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:17.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:17.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:17.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:17.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:17.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:17.969][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2024-06-15 16:22:17.984][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-06-15 16:22:17.988][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:17.990][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.992][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.994][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:22:17.996][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:17.998][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:22:17.999][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:18.001][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-06-15 16:22:18.003][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:22:18.005][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:22:18.007][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:18.008][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-06-15 16:22:18.010][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-06-15 16:22:18.012][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-06-15 16:22:18.014][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:22:18.016][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:22:18.016][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:22:18.016][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:22:18.018][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-15 16:22:18.019][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:18.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:18.023][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:22:18.024][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:22:18.026][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:22:18.028][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:22:18.029][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:18.029][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-06-15 16:22:18.031][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:22:18.033][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:22:18.035][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:22:18.036][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-06-15 16:22:18.036][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-06-15 16:22:18.045][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-15 16:22:18.048][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-15 16:22:18.051][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-06-15 16:22:18.054][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-15 16:22:18.057][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-15 16:22:18.060][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-15 16:22:18.096][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-06-15 16:22:18.099][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-06-15 16:22:18.105][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-06-15 16:22:18.112][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-06-15 16:22:18.118][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:22:18.121][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:22:18.124][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-06-15 16:22:18.126][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-06-15 16:22:18.142][biodb::testThat]
biodb.INFO [2024-06-15 16:22:18.144][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-06-15 16:22:18.146][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:18.148][biodb::testThat]
biodb.TRACE[2024-06-15 16:22:18.172][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-06-15 16:22:18.176][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:18.182][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:18.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:18.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:18.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:18.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:18.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:18.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:18.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:18.293][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:18.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:18.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:18.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:18.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.326][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:18.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:18.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:18.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.376][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:18.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:18.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:18.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:18.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:18.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.396][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:18.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:18.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.406][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:18.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:18.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:18.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:18.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:18.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:18.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:18.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.436][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:18.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:18.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.442][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:18.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:18.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:18.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:18.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.462][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:18.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:18.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:18.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.526][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:18.528][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:18.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.531][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:18.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:18.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:18.540][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:18.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.542][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:18.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:18.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:18.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:18.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:18.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:18.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:18.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:18.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:18.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:18.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:18.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:18.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:18.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:18.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:18.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:18.694][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-06-15 16:22:18.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:18.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:18.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:18.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:18.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:18.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:18.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:18.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:18.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:18.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:18.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:18.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:18.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.805][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:18.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:18.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.281][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:19.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:19.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:19.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:19.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.403][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:19.406][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:19.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.409][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:19.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:19.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:19.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:19.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.461][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:19.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:19.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:19.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.518][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.520][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.524][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:19.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.577][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.581][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:19.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:19.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:19.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:19.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:19.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:19.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.640][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:19.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:19.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:19.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.697][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.699][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:19.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.729][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.738][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.757][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.760][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.762][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:19.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:19.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:19.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:19.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:19.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:19.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:19.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.812][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:19.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:19.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.818][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:19.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:19.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.869][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.871][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:19.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:19.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:19.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:19.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:19.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:19.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:19.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.939][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:19.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:19.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.964][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:19.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:19.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.981][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:19.984][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:19.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:19.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:19.999][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:20.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:20.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.016][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:20.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:20.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.036][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:20.054][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:20.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.065][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:20.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:20.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:20.083][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:20.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.099][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:20.101][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:20.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.116][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:20.119][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:20.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:20.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:20.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.173][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2024-06-15 16:22:20.235][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:20.238][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:20.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:20.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:20.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:20.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:20.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:20.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:20.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:20.268][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.270][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.309][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:20.312][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:20.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.319][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:20.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:20.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.327][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:20.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:20.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.333][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:20.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:20.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:20.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:20.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:20.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.360][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.366][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.377][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:20.379][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:20.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.382][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:20.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:20.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.393][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:20.395][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:20.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.401][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:20.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:20.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:20.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:20.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:20.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:20.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.425][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:20.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:20.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:20.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:20.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.442][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:20.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:20.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.457][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:20.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:20.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.465][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:20.467][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:20.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:20.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:20.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:20.541][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2024-06-15 16:22:20.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:20.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:20.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:20.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:20.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:20.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:20.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:20.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:20.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:20.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:20.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.630][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:20.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:20.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:20.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.646][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:20.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:20.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.827][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.829][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:20.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:20.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:20.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:20.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:20.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:20.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.938][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:20.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:20.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:20.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:20.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:20.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:20.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:20.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:20.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:20.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.992][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:20.994][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:20.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:20.997][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:21.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:21.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.017][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:21.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.032][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:21.034][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.038][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:21.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.082][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.136][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.167][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:21.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:21.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:21.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:21.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.183][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:21.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.190][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:21.192][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:21.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:21.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.250][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.252][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.280][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.304][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.309][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:21.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:21.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:21.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:21.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:21.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.355][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:21.357][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:21.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:21.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:21.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.410][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.481][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.499][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:21.500][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:21.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.510][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:21.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:21.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.513][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.524][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.531][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.533][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.542][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.543][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.555][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.576][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.587][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.589][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.602][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:21.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:21.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:21.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:21.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.635][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2024-06-15 16:22:21.637][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:21.639][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:21.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:21.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:21.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:21.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:21.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:21.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:21.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:21.658][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.672][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:21.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:21.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:21.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:21.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.686][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:21.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:21.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.692][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:21.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:21.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.704][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.722][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.726][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.737][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.754][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.763][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:21.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:21.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.794][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:21.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:21.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:21.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.811][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:21.813][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.817][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:21.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.828][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:21.831][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:21.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:21.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:21.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:21.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:21.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:21.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:21.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:21.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:21.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:21.912][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2024-06-15 16:22:21.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:21.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:21.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:21.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:21.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:21.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:21.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:21.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:21.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:21.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.970][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:21.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:21.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:21.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:22.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:22.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:22.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:22.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:22.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:22.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:22.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:22.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:22.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:22.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:22.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:22.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.153][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:22.154][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:22.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.158][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:22.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:22.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:22.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:22.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:22.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:22.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:22.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:22.206][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:22.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.210][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:22.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:22.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.294][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.312][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.321][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.323][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.329][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.442][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:22.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:22.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.485][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:22.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:22.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:22.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.502][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:22.504][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:22.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.545][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.546][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.550][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:22.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:22.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:22.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:22.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:22.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:22.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.597][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:22.599][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:22.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:22.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:22.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:22.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:22.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:22.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.637][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:22.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:22.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:22.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:22.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:22.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:22.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.668][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:22.670][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:22.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.672][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.679][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:22.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:22.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:22.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:22.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.706][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:22.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.719][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.721][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:22.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.737][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:22.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:22.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.774][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.777][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.790][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.802][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:22.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:22.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:22.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:22.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:22.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:22.828][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:22:22.849][biodb::testThat]
biodb.INFO [2024-06-15 16:22:22.851][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-15 16:22:22.853][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:22.854][biodb::testThat]
biodb.DEBUG[2024-06-15 16:22:22.859][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2024-06-15 16:22:22.867][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-15 16:22:22.880][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2024-06-15 16:22:22.884][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2024-06-15 16:22:22.913][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-06-15 16:22:22.915][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:22.917][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:22.920][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:22.922][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:22.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:22.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:22.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:22.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:22.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:22.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:22.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:22.950][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.DEBUG[2024-06-15 16:22:22.980][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:22.983][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:22.985][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
biodb.TRACE[2024-06-15 16:22:24.057][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
biodb.DEBUG[2024-06-15 16:22:24.498][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:24.502][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.content"
biodb.TRACE[2024-06-15 16:22:24.523][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5c6fb88c946e8568cc03c0d73dc5603e.request"
biodb.TRACE[2024-06-15 16:22:24.528][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml"
biodb.DEBUG[2024-06-15 16:22:24.531][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:24.533][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-06-15 16:22:24.534][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:24.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:24.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:24.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:24.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:24.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:24.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:24.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:24.558][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.577][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:24.578][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:24.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.581][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:24.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.587][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:24.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:24.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.591][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:24.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:24.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:24.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:24.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.601][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:24.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:24.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:24.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:24.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:24.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.620][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:24.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:24.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.628][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:24.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:24.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.633][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:24.635][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:24.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.639][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:24.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:24.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.649][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:24.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:24.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.656][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:24.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:24.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:24.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.668][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:24.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:24.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:24.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:24.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.684][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:24.685][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:24.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:24.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:24.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:24.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:24.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:24.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:24.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:24.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:24.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:24.756][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.760][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.767][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:24.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:24.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:24.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:24.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.780][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:24.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:24.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.785][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:24.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:24.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:24.797][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:24.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:24.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:24.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:24.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:24.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.814][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:24.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:24.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.824][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:24.825][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:24.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:24.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:24.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.838][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:24.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:24.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.846][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:24.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:24.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:24.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:24.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:24.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.869][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:24.870][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:24.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:24.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:24.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.883][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:24.885][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:24.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.889][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:24.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:24.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.906][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:24.908][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:24.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:24.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:24.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:24.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:24.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:24.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:24.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:24.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:24.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:24.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:24.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:24.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:24.996][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:24.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.013][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:25.016][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:25.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.020][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:25.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:25.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.029][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:25.030][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:25.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:25.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:25.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.041][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:25.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:25.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:25.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:25.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:25.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:25.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:25.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:25.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:25.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.077][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:25.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:25.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.084][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:25.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:25.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.094][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.096][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:25.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:25.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:25.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:25.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.113][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:25.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:25.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:25.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.124][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:25.126][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:25.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.129][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:25.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:25.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:25.141][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:25.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:25.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:25.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:25.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:25.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:25.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:25.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:25.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:25.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:25.331][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2024-06-15 16:22:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:22:25.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:22:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:22:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:22:25.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:22:25.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:22:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:22:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:22:25.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:22:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:22:25.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:22:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:22:25.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:22:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:22:25.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:22:25.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:22:25.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:22:25.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:22:25.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:22:25.459][biodb::testThat]
biodb.INFO [2024-06-15 16:22:25.461][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-15 16:22:25.463][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:25.466][biodb::testThat]
biodb.TRACE[2024-06-15 16:22:25.472][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:25.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:25.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.479][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:25.482][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-06-15 16:22:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:25.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:25.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:25.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:25.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:25.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:25.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:25.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:25.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:25.583][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-06-15 16:22:25.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-06-15 16:22:25.628][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:25.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-06-15 16:22:25.654][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:25.673][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-06-15 16:22:25.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:25.704][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:25.706][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:25.729][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:22:26.241][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:22:26.720][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:26.724][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2024-06-15 16:22:26.731][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2024-06-15 16:22:26.736][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-06-15 16:22:26.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:26.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:26.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:26.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:26.770][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:26.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:26.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:26.776][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:22:26.786][biodb::testThat]
biodb.INFO [2024-06-15 16:22:26.787][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-06-15 16:22:26.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:26.791][biodb::testThat]
biodb.TRACE[2024-06-15 16:22:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:26.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:26.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:26.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:26.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:26.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:26.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:26.931][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:26.935][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:26.937][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-15 16:22:26.939][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:26.948][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-06-15 16:22:26.985][biodb::testThat]
biodb.INFO [2024-06-15 16:22:26.987][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-06-15 16:22:26.989][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:26.991][biodb::testThat]
biodb.TRACE[2024-06-15 16:22:27.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:27.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:27.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:27.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:27.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:27.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:27.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:27.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:27.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:27.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:27.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:27.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:27.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:27.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:27.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:27.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:27.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:27.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:27.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:27.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:27.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:22:27.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:22:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:22:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:27.183][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:22:27.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:22:27.205][biodb::testThat]
biodb.INFO [2024-06-15 16:22:27.207][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-15 16:22:27.209][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:27.211][biodb::testThat]
biodb.INFO [2024-06-15 16:22:27.231][biodb::testThat]
biodb.INFO [2024-06-15 16:22:27.234][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-15 16:22:27.235][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:27.237][biodb::testThat]
biodb.INFO [2024-06-15 16:22:27.256][biodb::testThat]
biodb.INFO [2024-06-15 16:22:27.257][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-15 16:22:27.259][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:27.260][biodb::testThat]
biodb.DEBUG[2024-06-15 16:22:27.265][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-06-15 16:22:28.004][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-06-15 16:22:28.911][biodb::testThat]
biodb.INFO [2024-06-15 16:22:28.913][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-15 16:22:28.916][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:28.918][biodb::testThat]
biodb.DEBUG[2024-06-15 16:22:29.332][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-06-15 16:22:29.725][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:29.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:29.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:29.731][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:29.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:29.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:29.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:29.738][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:22:29.741][biodb::testThat]
biodb.INFO [2024-06-15 16:22:29.743][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-06-15 16:22:29.745][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:29.746][biodb::testThat]
biodb.TRACE[2024-06-15 16:22:29.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:29.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:29.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:29.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:29.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:29.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:29.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:29.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:29.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:30.062][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:30.067][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:30.070][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-15 16:22:30.073][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:30.076][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-15 16:22:30.184][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:30.189][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:30.192][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-15 16:22:30.194][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:30.198][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-06-15 16:22:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:22:30.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:22:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:30.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:30.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:30.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:30.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:30.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:30.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:30.293][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:30.299][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:30.302][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-15 16:22:30.305][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:30.319][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-15 16:22:30.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:30.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:30.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:30.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:30.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:30.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:30.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:30.346][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-06-15 16:22:30.421][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:30.424][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-06-15 16:22:30.427][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:30.429][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:30.431][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:30.433][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:30.435][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:30.437][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:30.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:30.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:30.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:30.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:30.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:30.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:30.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:30.479][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2024-06-15 16:22:30.494][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:30.497][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:30.499][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2024-06-15 16:22:30.860][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2024-06-15 16:22:31.230][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:31.234][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2024-06-15 16:22:31.239][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2024-06-15 16:22:31.243][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2024-06-15 16:22:31.247][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:31.250][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:31.253][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:31.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:31.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:31.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:31.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:31.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:31.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:31.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:31.272][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:31.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:31.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:31.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.288][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:31.290][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:31.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.294][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:31.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:31.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.304][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:31.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:31.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:31.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:31.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:31.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:31.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:31.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:31.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:31.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:31.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.336][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:31.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:31.347][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:31.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.352][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:31.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.367][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:31.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:31.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:31.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:31.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.393][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:31.395][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:31.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:31.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:31.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.409][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:31.410][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:31.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:31.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:31.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:31.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:31.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:31.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:31.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:31.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:31.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:31.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:31.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:31.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:31.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:31.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:31.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:31.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:31.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:31.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:31.561][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-06-15 16:22:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:31.599][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:31.603][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:31.604][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-15 16:22:31.606][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:31.620][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-15 16:22:31.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:31.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:31.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:31.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:31.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:31.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:31.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:31.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:31.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:31.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:31.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:31.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:31.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:31.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:31.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:31.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:31.726][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-06-15 16:22:31.728][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:31.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-06-15 16:22:31.735][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:31.737][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:31.739][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:31.741][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:31.743][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:31.745][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:31.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:31.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:31.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:31.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:31.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:31.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:31.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:31.770][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2024-06-15 16:22:31.775][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:31.777][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:31.779][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2024-06-15 16:22:32.137][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2024-06-15 16:22:32.499][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:32.503][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2024-06-15 16:22:32.510][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2024-06-15 16:22:32.515][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2024-06-15 16:22:32.519][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:32.521][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:32.524][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:32.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:32.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:32.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:32.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:32.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:32.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:32.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:32.550][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:32.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:32.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.560][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:32.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:32.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.571][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:32.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:32.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:32.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:32.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.589][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:32.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:32.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:32.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:32.602][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:32.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:32.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.612][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:32.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:32.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.620][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:32.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.629][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:32.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:32.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:32.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.644][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:32.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:32.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.655][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:32.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:32.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:32.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:32.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:32.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:32.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:32.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:32.691][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:32.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:32.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:32.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:32.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:32.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:32.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:32.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:32.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:32.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:32.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:32.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:32.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:32.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:32.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:32.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:32.799][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-06-15 16:22:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:32.871][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:32.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:32.881][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-15 16:22:32.884][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:32.887][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-15 16:22:32.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:32.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:32.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:32.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:32.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:32.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:32.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:32.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:32.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:32.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:32.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:32.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:32.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:32.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:32.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:32.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:32.945][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-06-15 16:22:32.947][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:32.950][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-06-15 16:22:32.953][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:32.954][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:32.956][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:32.957][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:32.958][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:32.960][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:32.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:32.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:32.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:32.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:32.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:32.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:32.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:32.978][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2024-06-15 16:22:32.982][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:32.983][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:32.985][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2024-06-15 16:22:33.342][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2024-06-15 16:22:33.703][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:33.707][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2024-06-15 16:22:33.714][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2024-06-15 16:22:33.720][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2024-06-15 16:22:33.724][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:33.727][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:33.729][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:33.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:33.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:33.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:33.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:33.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:33.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:33.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:33.759][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:33.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:33.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.765][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:33.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:33.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.775][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:33.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:33.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.781][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.784][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:33.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:33.791][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:33.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.797][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:33.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:33.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.806][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:33.808][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:33.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.814][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:33.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:33.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:33.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.827][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.841][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:33.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:33.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.847][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:33.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.857][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:33.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:33.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.864][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:33.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:33.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:33.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:33.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:33.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:33.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:33.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:33.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:33.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:33.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:33.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:33.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:33.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:33.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:33.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:33.940][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-06-15 16:22:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:33.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:33.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:33.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:33.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:33.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:34.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:34.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:34.005][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-06-15 16:22:34.007][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:34.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-06-15 16:22:34.012][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:34.014][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:34.016][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:34.018][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:34.019][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:34.021][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:34.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:34.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:34.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:34.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:34.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:34.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:34.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:34.046][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2024-06-15 16:22:34.051][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:34.053][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:34.055][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2024-06-15 16:22:34.416][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2024-06-15 16:22:34.776][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:34.780][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2024-06-15 16:22:34.787][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2024-06-15 16:22:34.793][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2024-06-15 16:22:34.796][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:34.799][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:34.801][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:34.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:34.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:34.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:34.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:34.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:34.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:34.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:34.825][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:34.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:34.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:34.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.840][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:34.842][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:34.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.848][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:34.850][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:34.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.853][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:34.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:34.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.861][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.863][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:34.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:34.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.870][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:34.872][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:34.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.878][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:34.880][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:34.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:34.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:34.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.904][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.906][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:34.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:34.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:34.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:34.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.922][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:34.924][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:34.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:34.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:34.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:34.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:34.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.943][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:34.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:34.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:34.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:34.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:34.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:34.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:34.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:34.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:34.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:34.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:35.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:35.020][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-06-15 16:22:35.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:35.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:35.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:35.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:35.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:35.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:35.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:35.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:35.095][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-06-15 16:22:35.097][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:35.099][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-06-15 16:22:35.102][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:35.104][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:35.106][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:35.108][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:35.110][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:35.111][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:35.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:35.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:35.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:35.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:35.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:35.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:35.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:35.137][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2024-06-15 16:22:35.141][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:35.143][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:35.145][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2024-06-15 16:22:35.504][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2024-06-15 16:22:35.871][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:35.876][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2024-06-15 16:22:35.885][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2024-06-15 16:22:35.891][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2024-06-15 16:22:35.894][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:35.896][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:35.898][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:35.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:35.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:35.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:35.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:35.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:35.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:35.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:35.922][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:35.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:35.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:35.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.941][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:35.943][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:35.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.950][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:35.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:35.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:35.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:35.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:35.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:35.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:35.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:35.980][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:35.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:35.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.001][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:36.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:36.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:36.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.021][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:36.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:36.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:36.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.041][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:36.043][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:36.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:36.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.059][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:36.062][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:36.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.066][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:36.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:36.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:36.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:36.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:36.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:36.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:36.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:36.151][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-06-15 16:22:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:36.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:36.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:36.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:36.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:36.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:36.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:36.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:36.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:36.219][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-06-15 16:22:36.220][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:36.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-06-15 16:22:36.224][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:36.225][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:36.227][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:36.228][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:36.229][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:36.230][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:36.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:36.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:36.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:36.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:36.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:36.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:36.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:36.255][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2024-06-15 16:22:36.260][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:36.261][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:36.264][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2024-06-15 16:22:36.621][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2024-06-15 16:22:36.980][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:36.984][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2024-06-15 16:22:36.991][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2024-06-15 16:22:36.998][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2024-06-15 16:22:37.002][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:37.004][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:37.007][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:37.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:37.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:37.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:37.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:37.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:37.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:37.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:37.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:37.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:37.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.050][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:37.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:37.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.066][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:37.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:37.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:37.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:37.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:37.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:37.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:37.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:37.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.325][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:37.327][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:37.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.330][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.333][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:37.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.340][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:37.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:37.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:37.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.351][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:37.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:37.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:37.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.361][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:37.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:37.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:37.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.376][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:37.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:37.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.382][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.392][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:37.394][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:37.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:37.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:37.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:37.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:37.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:37.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:37.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:37.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:37.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:37.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:37.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:37.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:37.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:37.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:37.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:37.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:37.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:37.484][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-06-15 16:22:37.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:37.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:37.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:37.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:37.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:37.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:37.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:37.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:37.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:37.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:37.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:37.537][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-06-15 16:22:37.539][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:37.543][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-06-15 16:22:37.546][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:37.549][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:37.551][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:37.554][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:37.556][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:37.558][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:37.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:37.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:37.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:37.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:37.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:37.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:37.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:37.591][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2024-06-15 16:22:37.597][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:37.600][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:37.603][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2024-06-15 16:22:37.971][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2024-06-15 16:22:38.335][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:38.340][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2024-06-15 16:22:38.347][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2024-06-15 16:22:38.353][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2024-06-15 16:22:38.357][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:38.359][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:38.361][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:38.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:38.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:38.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:38.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:38.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:38.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:38.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:38.382][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:38.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:38.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:38.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.394][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:38.396][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:38.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:38.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.411][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:38.413][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:38.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:38.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:38.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:38.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:38.443][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:38.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:38.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:38.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.454][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:38.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:38.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.460][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:38.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.466][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:38.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:38.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.472][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:38.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:38.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:38.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:38.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:38.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.491][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:38.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:38.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.504][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:38.506][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:38.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.508][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:38.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.517][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:38.519][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:38.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.521][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:38.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:38.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:38.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:38.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:38.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:38.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:38.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:38.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:38.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:38.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:38.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:38.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:38.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:38.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:38.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:38.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:38.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:38.587][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-06-15 16:22:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:38.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:38.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:38.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:38.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:38.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:38.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:38.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:38.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:38.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:38.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:38.622][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-06-15 16:22:38.625][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:38.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-06-15 16:22:38.631][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:38.633][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:38.635][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:38.637][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:38.639][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:38.641][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:38.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:38.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:38.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:38.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:38.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:38.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:38.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:38.678][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2024-06-15 16:22:38.682][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:38.684][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:38.687][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2024-06-15 16:22:39.051][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2024-06-15 16:22:39.414][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:39.418][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2024-06-15 16:22:39.425][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2024-06-15 16:22:39.431][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2024-06-15 16:22:39.435][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:39.437][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:39.440][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:39.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:39.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:39.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:39.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:39.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:39.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:39.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:39.467][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:39.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:39.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.483][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:39.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:39.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.489][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:39.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:39.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.499][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:39.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:39.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:39.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:39.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:39.517][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:39.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.521][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:39.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:39.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.531][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:39.533][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:39.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.536][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:39.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:39.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.546][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:39.548][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:39.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.554][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:39.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:39.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:39.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:39.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.570][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:39.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:39.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.576][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:39.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.586][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:39.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:39.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:39.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.603][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:39.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:39.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.609][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.611][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.619][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:39.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:39.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:39.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:39.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:39.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:39.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:39.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:39.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:39.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:39.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:39.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:39.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:39.713][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-06-15 16:22:39.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:39.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:39.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:39.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:39.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:39.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:39.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:39.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:39.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:39.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:39.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:39.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:39.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:39.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:39.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:39.759][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-06-15 16:22:39.761][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:39.764][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-06-15 16:22:39.766][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:39.768][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:39.770][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:39.772][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:39.774][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:39.776][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:39.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:39.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:39.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:39.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:39.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:39.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:39.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:39.803][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2024-06-15 16:22:39.808][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:39.809][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:39.812][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2024-06-15 16:22:40.175][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2024-06-15 16:22:40.539][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:40.543][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2024-06-15 16:22:40.550][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2024-06-15 16:22:40.555][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2024-06-15 16:22:40.559][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:40.561][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:40.562][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:40.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:40.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:40.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:40.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:40.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:40.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:40.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:40.582][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:40.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:40.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:40.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.593][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:40.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:40.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:40.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.605][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:40.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:40.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.609][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:40.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:40.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:40.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:40.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:40.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:40.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:40.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:40.649][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:40.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.652][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.654][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:40.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:40.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:40.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:40.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:40.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.684][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:40.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:40.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.699][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:40.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:40.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.705][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:40.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.714][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:40.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:40.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:40.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:40.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:40.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:40.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:40.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:40.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:40.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:40.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:40.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:40.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:40.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:40.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:40.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:40.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:40.801][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-06-15 16:22:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:40.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:40.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:40.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:40.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:40.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:40.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:40.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:40.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:40.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:40.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:40.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:40.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:40.838][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-06-15 16:22:40.840][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:40.843][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-06-15 16:22:40.845][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:40.847][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:40.849][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:40.851][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:40.853][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:40.855][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:40.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:40.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:40.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:40.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:40.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:40.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:40.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:40.880][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2024-06-15 16:22:40.885][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:40.887][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:40.889][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2024-06-15 16:22:41.242][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2024-06-15 16:22:41.605][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:41.609][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2024-06-15 16:22:41.616][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2024-06-15 16:22:41.621][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2024-06-15 16:22:41.623][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:41.625][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:41.627][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:41.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:41.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:41.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:41.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:41.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:41.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:41.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:41.646][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:41.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:41.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.656][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:41.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:41.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.667][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:41.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:41.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:41.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:41.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:41.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:41.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:41.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.692][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:41.701][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:41.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.706][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:41.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:41.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.712][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:41.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:41.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:41.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:41.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.723][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:41.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:41.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.730][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:41.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:41.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:41.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.743][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:41.744][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:41.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.750][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:41.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.757][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:41.759][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:41.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:41.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:41.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:41.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:41.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:41.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:41.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:41.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:41.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:41.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:41.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:41.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:41.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:41.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:41.824][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-06-15 16:22:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:41.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:41.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:41.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:41.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:41.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:41.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:41.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:41.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:41.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:41.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:41.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:41.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:41.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:41.856][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-06-15 16:22:41.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:41.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-06-15 16:22:41.861][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:41.862][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:41.864][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:41.865][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:41.866][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:41.868][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:41.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:41.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:41.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:41.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:41.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:41.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:41.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:41.886][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2024-06-15 16:22:41.889][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:41.890][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:41.893][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2024-06-15 16:22:42.250][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2024-06-15 16:22:42.607][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:42.611][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2024-06-15 16:22:42.619][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2024-06-15 16:22:42.625][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2024-06-15 16:22:42.629][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:42.632][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:42.634][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:42.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:42.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:42.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:42.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:42.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:42.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:42.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:42.656][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:42.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:42.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.666][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:42.668][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:42.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.677][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:42.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:42.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:42.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:42.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:42.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:42.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.710][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:42.712][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:42.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.716][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.718][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:42.720][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:42.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.723][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:42.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:42.750][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:42.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:42.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.763][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:42.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:42.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:42.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:42.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.774][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:42.775][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:42.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.784][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:42.785][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:42.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:42.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:42.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:42.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:42.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:42.868][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-06-15 16:22:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:42.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:42.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:42.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:42.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:42.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:42.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:42.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:42.912][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-06-15 16:22:42.914][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:42.917][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-06-15 16:22:42.920][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:42.923][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:42.925][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:42.927][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:42.929][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:42.931][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:42.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:42.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:42.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:42.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:42.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:42.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:42.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:42.961][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2024-06-15 16:22:42.967][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:42.969][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:42.973][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2024-06-15 16:22:43.333][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2024-06-15 16:22:43.691][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:43.695][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2024-06-15 16:22:43.702][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2024-06-15 16:22:43.707][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2024-06-15 16:22:43.710][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:43.712][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:43.714][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:43.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:43.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:43.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:43.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:43.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:43.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:43.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:43.732][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:43.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:43.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:43.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:43.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.745][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:43.746][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:43.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:43.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:43.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.755][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:43.757][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:43.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:43.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:43.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:43.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:43.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:43.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.778][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:43.779][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:43.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.782][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:43.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:43.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.794][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:43.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:43.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:43.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:43.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:43.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.815][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:43.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:43.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:43.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:43.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.826][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:43.827][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:43.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:43.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:43.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:43.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:43.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:43.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:43.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:43.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:43.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:43.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:43.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:43.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:43.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:43.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:43.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:43.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:43.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:43.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:43.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:43.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:43.901][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-06-15 16:22:43.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:43.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:43.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:43.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:43.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:43.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:43.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:43.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:43.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:43.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:43.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:43.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:43.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:43.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:43.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:43.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:43.932][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-06-15 16:22:43.933][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:43.935][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-06-15 16:22:43.937][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:43.938][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:43.940][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:43.941][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:43.942][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:43.944][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:43.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:43.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:43.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:43.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:43.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:43.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:43.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:43.963][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2024-06-15 16:22:43.966][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:43.967][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:43.969][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2024-06-15 16:22:44.330][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2024-06-15 16:22:44.692][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:44.696][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2024-06-15 16:22:44.701][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2024-06-15 16:22:44.705][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2024-06-15 16:22:44.708][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:44.709][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:44.711][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:44.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:44.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:44.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:44.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:44.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:44.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:44.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:44.743][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:44.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:44.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.746][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:44.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:44.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.753][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:44.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:44.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.763][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:44.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:44.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:44.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:44.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:44.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.778][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:44.779][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.782][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:44.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:44.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.790][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:44.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:44.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.795][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.800][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:44.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:44.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.804][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.810][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:44.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:44.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:44.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:44.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.824][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:44.826][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:44.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:44.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:44.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:44.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:44.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:44.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:44.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:44.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:44.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:44.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:44.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:44.922][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-06-15 16:22:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:44.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:44.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:44.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:44.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:44.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:44.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:44.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:44.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:44.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:44.967][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-06-15 16:22:44.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:44.972][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-06-15 16:22:44.974][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:44.976][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:44.978][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:44.980][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:44.982][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:44.984][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:44.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:44.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:44.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:45.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:45.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:45.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:45.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:45.010][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2024-06-15 16:22:45.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:45.018][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:45.021][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2024-06-15 16:22:45.376][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2024-06-15 16:22:45.727][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:45.731][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2024-06-15 16:22:45.738][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2024-06-15 16:22:45.744][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2024-06-15 16:22:45.747][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:45.750][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:45.752][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:45.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:45.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:45.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:45.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:45.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:45.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:45.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:45.779][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:45.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:45.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:45.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.793][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:45.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:45.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.799][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.801][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:45.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:45.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.808][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:45.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:45.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:45.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:45.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:45.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.828][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:45.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:45.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.838][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:45.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:45.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.843][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.845][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:45.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:45.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.852][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.860][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:45.862][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:45.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.866][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:45.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:45.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.877][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:45.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:45.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:45.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.888][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:45.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:45.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:45.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:45.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:45.899][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:45.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:45.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:45.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:45.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:45.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:45.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:45.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:45.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:45.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:45.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:45.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:45.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:45.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:45.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:45.956][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-06-15 16:22:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:45.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:45.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:45.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:45.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:45.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:45.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:45.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:45.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:45.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:45.988][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-06-15 16:22:45.990][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:45.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-06-15 16:22:45.995][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:45.997][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:45.998][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:45.999][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:46.001][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:46.002][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:46.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:46.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:46.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:46.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:46.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:46.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:46.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:46.028][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2024-06-15 16:22:46.032][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:46.033][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:46.035][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2024-06-15 16:22:46.397][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2024-06-15 16:22:46.750][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:46.754][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2024-06-15 16:22:46.759][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2024-06-15 16:22:46.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2024-06-15 16:22:46.766][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:46.768][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:46.770][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:46.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:46.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:46.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:46.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:46.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:46.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:46.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:46.796][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:46.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:46.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:46.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.810][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:46.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:46.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:46.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:46.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.824][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:46.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:46.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:46.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:46.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:46.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:46.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:46.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:46.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:46.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:46.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.868][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:46.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:46.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.876][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:46.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:46.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:46.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:46.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.906][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:46.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:46.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:46.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:46.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.923][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:46.925][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:46.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:46.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:46.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:46.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:46.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:46.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:46.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:46.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:46.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:46.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:46.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:46.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:46.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:46.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:46.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:46.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:47.000][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-06-15 16:22:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:47.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:47.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:47.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:47.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:47.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:47.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:47.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:47.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:47.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:47.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:47.031][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-06-15 16:22:47.032][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:47.034][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-06-15 16:22:47.036][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:47.037][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:47.038][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:47.040][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:47.041][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:47.042][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:47.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:47.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:47.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:47.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:47.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:47.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:47.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:47.060][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2024-06-15 16:22:47.064][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:47.065][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:47.066][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2024-06-15 16:22:47.425][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2024-06-15 16:22:47.779][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:47.783][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2024-06-15 16:22:47.790][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2024-06-15 16:22:47.796][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2024-06-15 16:22:47.800][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:47.802][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:47.804][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:47.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:47.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:47.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:47.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:47.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:47.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:47.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:47.830][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:47.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:47.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:47.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:47.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.844][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:47.846][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:47.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:47.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:47.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.860][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:47.862][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:47.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.874][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:47.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:47.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:47.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:47.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:47.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.894][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:47.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:47.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.903][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:47.905][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:47.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.910][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:47.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:47.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.917][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:47.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.925][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:47.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:47.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:47.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:47.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.943][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:47.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:47.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.957][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:47.958][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:47.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.964][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:47.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:47.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:47.973][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:47.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.976][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:47.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:47.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:47.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:47.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:48.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:48.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:48.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:48.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:48.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:48.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:48.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:48.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:48.048][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-06-15 16:22:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:48.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:48.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:48.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:48.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:48.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:48.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:48.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:48.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:48.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:48.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:48.082][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-06-15 16:22:48.084][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:48.086][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-06-15 16:22:48.088][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:48.090][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:48.091][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:48.093][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:48.094][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:48.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:48.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:48.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:48.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:48.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:48.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:48.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:48.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:48.116][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2024-06-15 16:22:48.120][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:48.121][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:48.123][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2024-06-15 16:22:48.484][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2024-06-15 16:22:48.841][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:48.845][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2024-06-15 16:22:48.852][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2024-06-15 16:22:48.857][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2024-06-15 16:22:48.861][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:48.863][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:48.866][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:48.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:48.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:48.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:48.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:48.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:48.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:48.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:48.891][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:48.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:48.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.906][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:48.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:48.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:48.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:48.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.921][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:48.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:48.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:48.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:48.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:48.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.941][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:48.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:48.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:48.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:48.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:48.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.965][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:48.967][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:48.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.973][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:48.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:48.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:48.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:48.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:48.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:48.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:48.995][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:48.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:49.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.005][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:49.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:49.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:49.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.020][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:49.021][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:49.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:49.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:49.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.034][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:49.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:49.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:49.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:49.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:49.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:49.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:49.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:49.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:49.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:49.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:49.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:49.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:49.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:49.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:49.120][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-06-15 16:22:49.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:49.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:49.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:49.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:49.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:49.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:49.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:49.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:49.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:49.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:49.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:49.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:49.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:49.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:49.170][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-06-15 16:22:49.172][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:49.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-06-15 16:22:49.179][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:49.181][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:49.183][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:49.185][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:49.187][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:49.189][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:49.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:49.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:49.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:49.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:49.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:49.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:49.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:49.213][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2024-06-15 16:22:49.218][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:49.220][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:49.223][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2024-06-15 16:22:49.579][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2024-06-15 16:22:49.939][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:49.943][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2024-06-15 16:22:49.949][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2024-06-15 16:22:49.954][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2024-06-15 16:22:49.958][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:49.960][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:49.962][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:49.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:49.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:49.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:49.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:49.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:49.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:49.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:49.988][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:49.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:49.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.991][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:49.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:49.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:49.999][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:50.001][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:50.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:50.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:50.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.013][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:50.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:50.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:50.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:50.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.027][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:50.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:50.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:50.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:50.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:50.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:50.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.057][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:50.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:50.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.064][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:50.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:50.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:50.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:50.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:50.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:50.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:50.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:50.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:50.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.111][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:50.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:50.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.121][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:50.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:50.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.126][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:50.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:50.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:50.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:50.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:50.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:50.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:50.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:50.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:50.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:50.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:50.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:50.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:50.219][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-06-15 16:22:50.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:50.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:50.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:50.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:50.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:50.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:50.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:50.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:50.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:50.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:50.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:50.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:50.262][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-06-15 16:22:50.264][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:50.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-06-15 16:22:50.269][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:50.271][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:50.273][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:50.275][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:50.277][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:50.279][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:50.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:50.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:50.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:50.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:50.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:50.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:50.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:50.305][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2024-06-15 16:22:50.310][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:50.311][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:50.314][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2024-06-15 16:22:50.672][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2024-06-15 16:22:51.033][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:51.038][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2024-06-15 16:22:51.046][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2024-06-15 16:22:51.052][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2024-06-15 16:22:51.056][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:51.059][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:51.062][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:51.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:51.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:51.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:51.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:51.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:51.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:51.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:51.092][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:51.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:51.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:51.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.109][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:51.111][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:51.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.115][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.117][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.126][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:51.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:51.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.130][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.139][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:51.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:51.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.144][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.151][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:51.152][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:51.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:51.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:51.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:51.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.167][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:51.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:51.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:51.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:51.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.184][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:51.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:51.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:51.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:51.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:51.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.201][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:51.203][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:51.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:51.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:51.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:51.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:51.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:51.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:51.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:51.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:51.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:51.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:51.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:51.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:51.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:51.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:51.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:51.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:51.279][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-06-15 16:22:51.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:51.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:51.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:51.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:51.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:51.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:51.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:51.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:51.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:51.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:51.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:51.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:51.313][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-06-15 16:22:51.314][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:51.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-06-15 16:22:51.318][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:51.319][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:51.321][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:51.323][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:51.325][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:51.326][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:51.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:51.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:51.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:51.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:51.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:51.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:51.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:51.346][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2024-06-15 16:22:51.350][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:51.352][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:51.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2024-06-15 16:22:51.707][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2024-06-15 16:22:52.064][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:52.068][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2024-06-15 16:22:52.075][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2024-06-15 16:22:52.080][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2024-06-15 16:22:52.084][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:52.086][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:52.089][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:52.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:52.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:52.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:52.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:52.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:52.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:52.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:52.127][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:52.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:52.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:52.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:52.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.142][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:52.144][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:52.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:52.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:52.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.156][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:52.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:52.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:52.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:52.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:52.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.174][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:52.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:52.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:52.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.185][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:52.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.191][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:52.193][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:52.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.196][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:52.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:52.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:52.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.211][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:52.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:52.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:52.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:52.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.222][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:52.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:52.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.227][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.236][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:52.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:52.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.251][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:52.252][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:52.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:52.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:52.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:52.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:52.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:52.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:52.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:52.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:52.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:52.337][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-06-15 16:22:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:52.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:52.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:52.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:52.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:52.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:52.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:52.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:52.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:52.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:52.375][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-06-15 16:22:52.376][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:52.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-06-15 16:22:52.380][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:52.381][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:52.383][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:52.384][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:52.385][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:52.386][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:52.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:52.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:52.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:52.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:52.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:52.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:52.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:52.410][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2024-06-15 16:22:52.414][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:52.416][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:52.418][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2024-06-15 16:22:52.770][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2024-06-15 16:22:53.128][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:53.131][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2024-06-15 16:22:53.137][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2024-06-15 16:22:53.143][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2024-06-15 16:22:53.147][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:53.150][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:53.152][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:53.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.178][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:53.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:53.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:53.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.193][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:53.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:53.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:53.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.204][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:53.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:53.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:53.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:53.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:53.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:53.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:53.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:53.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.239][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:53.241][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:53.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.247][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:53.249][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.252][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.254][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:53.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:53.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:53.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.274][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:53.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:53.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.286][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:53.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:53.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.293][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:53.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:53.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.298][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:53.299][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:53.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:53.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:53.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:53.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:53.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:53.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:53.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:53.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:53.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:53.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:53.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:53.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:53.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:53.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:53.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:53.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:53.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.361][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-06-15 16:22:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.414][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:53.418][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:53.420][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-15 16:22:53.422][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:53.424][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-15 16:22:53.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:53.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:53.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:53.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:53.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:53.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:53.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:53.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:53.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:54.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:54.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:54.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:54.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:54.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:54.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:54.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:54.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:54.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:54.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:54.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:54.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:54.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:54.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:54.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:54.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:54.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:54.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:54.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:54.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:54.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:54.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:54.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:54.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:54.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:54.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:54.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:54.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:54.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:54.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:54.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:54.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:54.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:54.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:54.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:54.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:54.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:54.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:54.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:54.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:54.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:54.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:54.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:54.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:54.269][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:54.274][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:54.276][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:54.278][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:22:54.638][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:22:54.996][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:55.001][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2024-06-15 16:22:55.007][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2024-06-15 16:22:55.012][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:55.016][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:55.018][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:55.021][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:22:55.375][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:22:55.728][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:55.733][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2024-06-15 16:22:55.741][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2024-06-15 16:22:55.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:55.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:55.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:55.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:55.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:55.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:55.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:55.767][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-06-15 16:22:55.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:55.772][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-06-15 16:22:55.774][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:55.777][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:55.779][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:55.781][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:55.783][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:55.785][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:55.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:55.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:55.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:55.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:55.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:55.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:55.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:55.808][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2024-06-15 16:22:55.811][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:55.812][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:55.814][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2024-06-15 16:22:56.169][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2024-06-15 16:22:56.529][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:56.533][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2024-06-15 16:22:56.540][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2024-06-15 16:22:56.546][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2024-06-15 16:22:56.549][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:56.552][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:56.554][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:56.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:56.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:56.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:56.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:56.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:56.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:56.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:56.578][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:56.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:56.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:56.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:56.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.593][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:56.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:56.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.601][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:56.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:56.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.608][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:56.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:56.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.613][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:56.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:56.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.623][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:56.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:56.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:56.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:56.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:56.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:56.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.657][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:56.659][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:56.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.663][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:56.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.668][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:56.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:56.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:56.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:56.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:56.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:56.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.707][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:56.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:56.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:56.719][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:56.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:56.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:56.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:56.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:56.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:56.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:56.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:56.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:56.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:56.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:56.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:56.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:56.795][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-06-15 16:22:56.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:56.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:56.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:56.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:56.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:56.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:56.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:56.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:56.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:56.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:56.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:56.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:56.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:56.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:56.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:56.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:56.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:56.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:56.861][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-06-15 16:22:56.862][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:22:56.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-06-15 16:22:56.866][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:22:56.868][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:22:56.869][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:22:56.870][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:22:56.872][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:22:56.873][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:22:56.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:56.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:56.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:56.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:56.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:56.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:56.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:56.892][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2024-06-15 16:22:56.896][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:22:56.897][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:22:56.899][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2024-06-15 16:22:57.267][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2024-06-15 16:22:57.626][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:22:57.630][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2024-06-15 16:22:57.637][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2024-06-15 16:22:57.642][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2024-06-15 16:22:57.645][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:22:57.647][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:22:57.648][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:22:57.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:57.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:57.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:57.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:57.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:57.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:57.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:57.666][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:57.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:57.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:57.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.677][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:57.679][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:57.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:22:57.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:22:57.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.689][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:57.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:57.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:22:57.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:22:57.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.703][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:57.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:57.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:22:57.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:22:57.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:57.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:57.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.723][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:22:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:22:57.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.733][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:57.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:22:57.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.738][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.740][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:57.742][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:57.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:22:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:57.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.755][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.762][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:57.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:57.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.766][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:22:57.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:22:57.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.773][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:57.774][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:57.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:22:57.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:22:57.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.784][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:57.785][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:57.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:22:57.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:22:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:57.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:57.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:57.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:57.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:57.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:22:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:22:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:57.846][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-06-15 16:22:57.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:57.916][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:57.924][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:57.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-15 16:22:57.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:57.933][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-15 16:22:57.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:57.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:57.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:57.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:57.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:57.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:57.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:57.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:57.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:57.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:57.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:57.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:57.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:57.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:57.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:57.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:57.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:57.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:57.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.735][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:58.739][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:58.740][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-15 16:22:58.742][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:58.745][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-15 16:22:58.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:58.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:58.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:58.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:58.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:58.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:58.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:58.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:58.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:58.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:58.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:22:59.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:22:59.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:22:59.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:22:59.566][biodb::testThat]
biodb.INFO [2024-06-15 16:22:59.568][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-06-15 16:22:59.569][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:22:59.570][biodb::testThat]
biodb.TRACE[2024-06-15 16:22:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:22:59.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:22:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.580][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:22:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:22:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.585][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:22:59.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:22:59.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:22:59.688][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:59.694][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:59.696][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-15 16:22:59.699][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:59.702][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-15 16:22:59.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.741][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:22:59.745][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:22:59.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-15 16:22:59.749][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:22:59.752][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-15 16:22:59.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:22:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:22:59.840][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:22:59.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:22:59.880][private$selectFields]
biodb.TRACE[2024-06-15 16:22:59.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:22:59.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:22:59.885][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:22:59.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.893][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.899][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:22:59.902][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:22:59.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.910][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.911][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:22:59.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.939][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-15 16:22:59.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:22:59.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:22:59.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:22:59.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:22:59.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:22:59.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:22:59.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:22:59.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:22:59.967][private$selectFields]
biodb.TRACE[2024-06-15 16:22:59.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:22:59.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:22:59.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:22:59.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:22:59.989][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:22:59.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:22:59.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:22:59.997][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:22:59.999][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:00.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:23:00.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:00.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:00.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:00.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:00.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:00.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:00.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:00.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:00.055][private$selectFields]
biodb.TRACE[2024-06-15 16:23:00.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:00.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:00.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:00.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.067][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:00.078][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:00.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.087][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:00.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:00.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:00.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-15 16:23:00.108][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:00.110][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:00.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:00.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:00.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:00.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:00.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:00.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:00.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:00.141][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:00.145][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:00.147][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:00.149][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:00.505][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:00.864][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:00.868][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2024-06-15 16:23:00.876][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2024-06-15 16:23:00.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:00.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:00.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:00.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:00.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:00.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:00.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:00.903][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2024-06-15 16:23:00.905][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:00.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2024-06-15 16:23:00.910][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:00.912][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:00.914][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:00.916][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:00.918][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:00.919][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:00.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:00.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:00.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:00.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:00.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:00.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:00.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:00.945][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2024-06-15 16:23:00.950][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:00.964][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:00.966][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2024-06-15 16:23:01.324][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2024-06-15 16:23:01.679][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:01.683][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2024-06-15 16:23:01.690][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2024-06-15 16:23:01.695][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2024-06-15 16:23:01.699][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:01.701][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:01.704][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:01.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:01.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:01.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:01.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:01.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:01.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:01.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:01.729][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:01.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:01.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:01.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:01.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.744][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:01.746][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:01.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:01.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:01.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.758][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:01.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:01.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:01.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:01.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:01.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:01.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:01.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:01.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:01.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:01.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:01.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:01.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.806][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:01.808][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:01.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.814][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:01.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:01.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:01.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:01.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.831][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:01.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:01.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:01.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:01.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.846][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:01.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:01.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.851][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:01.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:01.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.861][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:01.863][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:01.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.866][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.869][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:01.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:01.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:01.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:01.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:01.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:01.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:01.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:01.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:01.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:01.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:01.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:01.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:01.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:01.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:01.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:01.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:01.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:01.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:01.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:01.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:01.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:01.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:01.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:01.943][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2024-06-15 16:23:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:01.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:01.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:01.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:01.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:01.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:01.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:01.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:01.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:01.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:01.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:01.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:01.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:01.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:01.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:01.976][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2024-06-15 16:23:01.977][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:01.979][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2024-06-15 16:23:01.981][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:01.983][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:01.984][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:01.985][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:01.986][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:01.988][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:01.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:01.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:01.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:02.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:02.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:02.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:02.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:02.006][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2024-06-15 16:23:02.009][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:02.011][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:02.014][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2024-06-15 16:23:02.368][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2024-06-15 16:23:02.724][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:02.728][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2024-06-15 16:23:02.734][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2024-06-15 16:23:02.739][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2024-06-15 16:23:02.742][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:02.744][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:02.745][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:02.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:02.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:02.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:02.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:02.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:02.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:02.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:02.764][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:02.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:02.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:02.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:02.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.776][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:02.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:02.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:02.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.787][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:02.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:02.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:02.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:02.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.798][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:02.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:02.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:02.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:02.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:02.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:02.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:02.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.820][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:02.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:02.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.825][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:02.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:02.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.830][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:02.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:02.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:02.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:02.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:02.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:02.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.847][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:02.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:02.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:02.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.859][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:02.860][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:02.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.864][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:02.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:02.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.880][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:02.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:02.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:02.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:02.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:02.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:02.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:02.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:02.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:02.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:02.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:02.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:02.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:02.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:02.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:02.986][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2024-06-15 16:23:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:02.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:02.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:02.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:03.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:03.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:03.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:03.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:03.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:03.021][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:03.025][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:03.385][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:03.736][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:03.740][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2024-06-15 16:23:03.746][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2024-06-15 16:23:03.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:03.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:03.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:03.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:03.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:03.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:03.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:03.780][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2024-06-15 16:23:03.782][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:03.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2024-06-15 16:23:03.787][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:03.789][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:03.790][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:03.791][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:03.793][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:03.794][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:03.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:03.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:03.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:03.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:03.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:03.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:03.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:03.812][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2024-06-15 16:23:03.815][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:03.816][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:03.818][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2024-06-15 16:23:04.173][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2024-06-15 16:23:04.610][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:04.613][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2024-06-15 16:23:04.618][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2024-06-15 16:23:04.623][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2024-06-15 16:23:04.627][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:04.630][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:04.632][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:04.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:04.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:04.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:04.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:04.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:04.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:04.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:04.658][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:04.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:04.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.664][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:04.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.673][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:04.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:04.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.681][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:04.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:04.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.688][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:04.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:04.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:04.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:04.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:04.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:04.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:04.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:04.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:04.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:04.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:04.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.736][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:04.738][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:04.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.744][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:04.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:04.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.752][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:04.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:04.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.761][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:04.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:04.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:04.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:04.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.786][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:04.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:04.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:04.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:04.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.803][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:04.805][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:04.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.812][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:04.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:04.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.820][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:04.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:04.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.826][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:04.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:04.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:04.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:04.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:04.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:04.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:04.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:04.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:04.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:04.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:04.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:04.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:04.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:04.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:04.920][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2024-06-15 16:23:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:04.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:04.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:04.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:04.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:04.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:04.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:04.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:04.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:04.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:04.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:04.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:04.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:04.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:04.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:04.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:04.970][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2024-06-15 16:23:04.972][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:04.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2024-06-15 16:23:04.977][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:04.979][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:04.982][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:04.984][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:04.986][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:04.987][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:04.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:04.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:04.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:05.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:05.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:05.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:05.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:05.015][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2024-06-15 16:23:05.020][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:05.022][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:05.024][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2024-06-15 16:23:05.385][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2024-06-15 16:23:05.745][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:05.750][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2024-06-15 16:23:05.756][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2024-06-15 16:23:05.761][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2024-06-15 16:23:05.769][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:05.772][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:05.774][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:05.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:05.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:05.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:05.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:05.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:05.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:05.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:05.792][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:05.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:05.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:05.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:05.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.805][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:05.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:05.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.810][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:05.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:05.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.819][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:05.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:05.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:05.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:05.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:05.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:05.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:05.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.852][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:05.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:05.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.855][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.862][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:05.863][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:05.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.866][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:05.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:05.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.872][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:05.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:05.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:05.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:05.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:05.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.892][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:05.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:05.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:05.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:05.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.905][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:05.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:05.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.915][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:05.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:05.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:05.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:05.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:05.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:05.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:05.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:05.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:05.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:05.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:05.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:05.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:05.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:05.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:05.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:05.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:05.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:05.975][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2024-06-15 16:23:05.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:05.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:05.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:05.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:05.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:05.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:05.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:05.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:05.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:05.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:05.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:06.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:06.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:06.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:06.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:06.007][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2024-06-15 16:23:06.008][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:06.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2024-06-15 16:23:06.012][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:06.014][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:06.015][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:06.017][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:06.018][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:06.019][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:06.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:06.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:06.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:06.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:06.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:06.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:06.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:06.037][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2024-06-15 16:23:06.040][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:06.041][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:06.043][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2024-06-15 16:23:06.395][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2024-06-15 16:23:06.755][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:06.759][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2024-06-15 16:23:06.764][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2024-06-15 16:23:06.768][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2024-06-15 16:23:06.771][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:06.773][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:06.774][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:06.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:06.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:06.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:06.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:06.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:06.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:06.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:06.792][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:06.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:06.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:06.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:06.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.806][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:06.807][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:06.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:06.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:06.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.817][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:06.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:06.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:06.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:06.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:06.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:06.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:06.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:06.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:06.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:06.860][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:06.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.865][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:06.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:06.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:06.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:06.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:06.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.880][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:06.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:06.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.887][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:06.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:06.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:06.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.898][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:06.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:06.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:06.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:06.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:06.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:06.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.913][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:06.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:06.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:06.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:06.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:06.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:06.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:06.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:06.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:06.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:06.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:06.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:06.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:06.993][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2024-06-15 16:23:06.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:06.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:06.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:07.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:07.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:07.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:07.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:07.060][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:07.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:07.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:07.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:07.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:07.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:07.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:07.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:07.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.110][private$selectFields]
biodb.TRACE[2024-06-15 16:23:07.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:07.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:07.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.118][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.126][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.133][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:07.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-06-15 16:23:07.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:07.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:07.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:07.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:07.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:07.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:07.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.182][private$selectFields]
biodb.TRACE[2024-06-15 16:23:07.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:07.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:07.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.190][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.198][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.203][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:07.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-06-15 16:23:07.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:07.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:07.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:07.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:07.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:07.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:07.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:07.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.249][private$selectFields]
biodb.TRACE[2024-06-15 16:23:07.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:07.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:07.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.266][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:07.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.272][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:07.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:07.288][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-06-15 16:23:07.290][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:07.291][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:07.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:07.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:07.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:07.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:07.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:07.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:07.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:07.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:07.316][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:07.317][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:07.320][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:07.681][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:08.044][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:08.048][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2024-06-15 16:23:08.056][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2024-06-15 16:23:08.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:08.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:08.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:08.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:08.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:08.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:08.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:08.078][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2024-06-15 16:23:08.080][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:08.082][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2024-06-15 16:23:08.084][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:08.085][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:08.087][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:08.088][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:08.089][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:08.091][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:08.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:08.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:08.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:08.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:08.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:08.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:08.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:08.109][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2024-06-15 16:23:08.112][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:08.113][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:08.115][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2024-06-15 16:23:08.465][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2024-06-15 16:23:08.826][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:08.831][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2024-06-15 16:23:08.837][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2024-06-15 16:23:08.843][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2024-06-15 16:23:08.846][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:08.848][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:08.851][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:08.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:08.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:08.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:08.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:08.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:08.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:08.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:08.871][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:08.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:08.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:08.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:08.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.881][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:08.883][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:08.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:08.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:08.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.892][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:08.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:08.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:08.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:08.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:08.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:08.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.907][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:08.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:08.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:08.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:08.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:08.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:08.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:08.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:08.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.940][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:08.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:08.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.945][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.947][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:08.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:08.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.954][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:08.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:08.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.982][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:08.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:08.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:08.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:08.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:08.997][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:08.999][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:09.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:09.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:09.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:09.014][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:09.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:09.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:09.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:09.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:09.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:09.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:09.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:09.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:09.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:09.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:09.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:09.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:09.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:09.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:09.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:09.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:09.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:09.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:09.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:09.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:09.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:09.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:09.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:09.097][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2024-06-15 16:23:09.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:09.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:09.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:09.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:09.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:09.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:09.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:09.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:09.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:09.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:09.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:09.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:09.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:09.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:09.141][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2024-06-15 16:23:09.143][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:09.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2024-06-15 16:23:09.148][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:09.150][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:09.153][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:09.155][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:09.157][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:09.158][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:09.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:09.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:09.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:09.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:09.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:09.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:09.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:09.185][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2024-06-15 16:23:09.189][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:09.191][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:09.194][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2024-06-15 16:23:09.547][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2024-06-15 16:23:09.906][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:09.910][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2024-06-15 16:23:09.917][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2024-06-15 16:23:09.923][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2024-06-15 16:23:09.926][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:09.928][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:09.931][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:09.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:09.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:09.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:09.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:09.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:09.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:09.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:09.950][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:09.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:09.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:09.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:09.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.961][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:09.963][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:09.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:09.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:09.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:09.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:09.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:09.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:09.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:09.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.991][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:09.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:09.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:09.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:10.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:10.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:10.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:10.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:10.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.019][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:10.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:10.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.024][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:10.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:10.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:10.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:10.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:10.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.047][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:10.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:10.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:10.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:10.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.057][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:10.058][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:10.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:10.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:10.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:10.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:10.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:10.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:10.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:10.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:10.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:10.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:10.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:10.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:10.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:10.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:10.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:10.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:10.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:10.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:10.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:10.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:10.156][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2024-06-15 16:23:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:10.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:10.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:10.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:10.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:10.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:10.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:10.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:10.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:10.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:10.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:10.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:10.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:10.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:10.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:10.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:10.205][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2024-06-15 16:23:10.207][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:10.211][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2024-06-15 16:23:10.213][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:10.215][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:10.218][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:10.220][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:10.222][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:10.224][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:10.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:10.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:10.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:10.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:10.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:10.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:10.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:10.250][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2024-06-15 16:23:10.253][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:10.254][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:10.256][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2024-06-15 16:23:10.604][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2024-06-15 16:23:10.957][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:10.960][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2024-06-15 16:23:10.965][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2024-06-15 16:23:10.970][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2024-06-15 16:23:10.974][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:10.977][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:10.979][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:10.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:10.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:10.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:11.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:11.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:11.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:11.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:11.021][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:11.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:11.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:11.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:11.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.036][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:11.037][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:11.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.041][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:11.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:11.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.050][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:11.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:11.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:11.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:11.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:11.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:11.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:11.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:11.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:11.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:11.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:11.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:11.099][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:11.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.105][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:11.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:11.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.111][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:11.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:11.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:11.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:11.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:11.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.137][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:11.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:11.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:11.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:11.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:11.155][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:11.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.159][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:11.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:11.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:11.172][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:11.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:11.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:11.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:11.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:11.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:11.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:11.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:11.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:11.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:11.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:11.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:11.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:11.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:11.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:11.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:11.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:11.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:11.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:11.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:11.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:11.265][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2024-06-15 16:23:11.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:11.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:11.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:11.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:11.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:11.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:11.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:11.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:11.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:11.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:11.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:11.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:11.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:11.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:11.314][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2024-06-15 16:23:11.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:11.320][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2024-06-15 16:23:11.322][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:11.325][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:11.327][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:11.329][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:11.331][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:11.332][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:11.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:11.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:11.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:11.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:11.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:11.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:11.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:11.353][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2024-06-15 16:23:11.356][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:11.357][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:11.359][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2024-06-15 16:23:11.712][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2024-06-15 16:23:12.076][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:12.081][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2024-06-15 16:23:12.087][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2024-06-15 16:23:12.093][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2024-06-15 16:23:12.097][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:12.099][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:12.102][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:12.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:12.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:12.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:12.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:12.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:12.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:12.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:12.124][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:12.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:12.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.129][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:12.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:12.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.140][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:12.142][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:12.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:12.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.157][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:12.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:12.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:12.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:12.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:12.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:12.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:12.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:12.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:12.187][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:12.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.190][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:12.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:12.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:12.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.203][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.205][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:12.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:12.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.211][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.213][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:12.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:12.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:12.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:12.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:12.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:12.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.236][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:12.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:12.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.249][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:12.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:12.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.256][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:12.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.264][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:12.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:12.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:12.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:12.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:12.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:12.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:12.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:12.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:12.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:12.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:12.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:12.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:12.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:12.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:12.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:12.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:12.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:12.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:12.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:12.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:12.344][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2024-06-15 16:23:12.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:12.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:12.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:12.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:12.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:12.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:12.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:12.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:12.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:12.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:12.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:12.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:12.403][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2024-06-15 16:23:12.404][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:12.407][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2024-06-15 16:23:12.408][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:12.410][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:12.411][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:12.413][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:12.414][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:12.416][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:12.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:12.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:12.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:12.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:12.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:12.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:12.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:12.439][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2024-06-15 16:23:12.443][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:12.444][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:12.446][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2024-06-15 16:23:12.803][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2024-06-15 16:23:13.161][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:13.165][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2024-06-15 16:23:13.171][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2024-06-15 16:23:13.177][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2024-06-15 16:23:13.181][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:13.184][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:13.186][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:13.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:13.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:13.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:13.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:13.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:13.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:13.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:13.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:13.214][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:13.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:13.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:13.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.227][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:13.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:13.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:13.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:13.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.241][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:13.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:13.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:13.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:13.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:13.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:13.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:13.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:13.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:13.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:13.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:13.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:13.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:13.288][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:13.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.293][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:13.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:13.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.301][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:13.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.308][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:13.310][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:13.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:13.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.323][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:13.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:13.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:13.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:13.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.337][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:13.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:13.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.352][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:13.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:13.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:13.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:13.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:13.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:13.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:13.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:13.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:13.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:13.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:13.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:13.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:13.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:13.438][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2024-06-15 16:23:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:13.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:13.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:13.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:13.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:13.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:13.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:13.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:13.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:13.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:13.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:13.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:13.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:13.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:13.482][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2024-06-15 16:23:13.484][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:13.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2024-06-15 16:23:13.489][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:13.491][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:13.493][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:13.495][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:13.497][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:13.498][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:13.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:13.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:13.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:13.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:13.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:13.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:13.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:13.518][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2024-06-15 16:23:13.523][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:13.525][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:13.527][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2024-06-15 16:23:13.886][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2024-06-15 16:23:14.239][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:14.243][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2024-06-15 16:23:14.250][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2024-06-15 16:23:14.256][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2024-06-15 16:23:14.260][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:14.262][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:14.264][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:14.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:14.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:14.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:14.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:14.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:14.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:14.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:14.291][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:14.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:14.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:14.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.306][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:14.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:14.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.313][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:14.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:14.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.320][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:14.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:14.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.326][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:14.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:14.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.336][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:14.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:14.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.341][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:14.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:14.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:14.352][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:14.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.356][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:14.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.365][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:14.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:14.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.373][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:14.374][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:14.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.378][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.380][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:14.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:14.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.387][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:14.389][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:14.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:14.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:14.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.402][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:14.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:14.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.407][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:14.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:14.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.417][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:14.419][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:14.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:14.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:14.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:14.449][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:14.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:14.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:14.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:14.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:14.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:14.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:14.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:14.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:14.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:14.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:14.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:14.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:14.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:14.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:14.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:14.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:14.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:14.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:14.531][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2024-06-15 16:23:14.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:14.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:14.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:14.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:14.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:14.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:14.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:14.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:14.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:14.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:14.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:14.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:14.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:14.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:14.577][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2024-06-15 16:23:14.580][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:14.583][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2024-06-15 16:23:14.586][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:14.588][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:14.590][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:14.592][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:14.594][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:14.596][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:14.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:14.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:14.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:14.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:14.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:14.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:14.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:14.624][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2024-06-15 16:23:14.630][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:14.632][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:14.634][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2024-06-15 16:23:14.993][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2024-06-15 16:23:15.350][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:15.354][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2024-06-15 16:23:15.361][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2024-06-15 16:23:15.366][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2024-06-15 16:23:15.370][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:15.372][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:15.374][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:15.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:15.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:15.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:15.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:15.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:15.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:15.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:15.400][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:15.402][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:15.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:15.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.415][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:15.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:15.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:15.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.429][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:15.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:15.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.435][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:15.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:15.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:15.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:15.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:15.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:15.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.459][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:15.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:15.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.464][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:15.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:15.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.473][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:15.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:15.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.481][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:15.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:15.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.486][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:15.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:15.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:15.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.501][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:15.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:15.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.510][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:15.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:15.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:15.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:15.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.525][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:15.527][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:15.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.530][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:15.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:15.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.539][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:15.541][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:15.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:15.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:15.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:15.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:15.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:15.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:15.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:15.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:15.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:15.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:15.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:15.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:15.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:15.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:15.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:15.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:15.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:15.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:15.625][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2024-06-15 16:23:15.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:15.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:15.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:15.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:15.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:15.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:15.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:15.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:15.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:15.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:15.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:15.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:15.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:15.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:15.668][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2024-06-15 16:23:15.670][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:15.673][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2024-06-15 16:23:15.675][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:15.677][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:15.679][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:15.681][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:15.683][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:15.684][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:15.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:15.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:15.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:15.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:15.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:15.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:15.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:15.709][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2024-06-15 16:23:15.714][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:15.716][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:15.718][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2024-06-15 16:23:16.084][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2024-06-15 16:23:16.451][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:16.455][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2024-06-15 16:23:16.462][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2024-06-15 16:23:16.468][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2024-06-15 16:23:16.472][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:16.475][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:16.477][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:16.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:16.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:16.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:16.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:16.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:16.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:16.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:16.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:16.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:16.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:16.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:16.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.517][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:16.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:16.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.532][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.534][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.540][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:16.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:16.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:16.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:16.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:16.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:16.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.554][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:16.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:16.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:16.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:16.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:16.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:16.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:16.572][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:16.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.574][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.576][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:16.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:16.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.581][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:16.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:16.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:16.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:16.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:16.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:16.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.596][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:16.598][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:16.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.600][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:16.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:16.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.607][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:16.608][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:16.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.610][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.617][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:16.618][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:16.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:16.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:16.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:16.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:16.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:16.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:16.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:16.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:16.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:16.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:16.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:16.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:16.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:16.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:16.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:16.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:16.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:16.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:16.678][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2024-06-15 16:23:16.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:16.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:16.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:16.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:16.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:16.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:16.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:16.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:16.696][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:16.700][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:16.701][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:16.703][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:17.061][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:17.415][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:17.419][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2024-06-15 16:23:17.426][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2024-06-15 16:23:17.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:17.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:17.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:17.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:17.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:17.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:17.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:17.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:17.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:17.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:17.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:17.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:17.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:17.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:17.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:17.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:17.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:17.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:17.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:17.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:17.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:17.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:17.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:17.495][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2024-06-15 16:23:17.497][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:17.500][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2024-06-15 16:23:17.502][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:17.504][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:17.506][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:17.508][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:17.510][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:17.512][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:17.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:17.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:17.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:17.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:17.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:17.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:17.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:17.538][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2024-06-15 16:23:17.542][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:17.544][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:17.547][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2024-06-15 16:23:17.904][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2024-06-15 16:23:18.269][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:18.273][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2024-06-15 16:23:18.279][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2024-06-15 16:23:18.283][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2024-06-15 16:23:18.287][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:18.289][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:18.292][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:18.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:18.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:18.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:18.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:18.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:18.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:18.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:18.312][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:18.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:18.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:18.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:18.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.324][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:18.326][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:18.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:18.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:18.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.338][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:18.340][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:18.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:18.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:18.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:18.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:18.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:18.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:18.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:18.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:18.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:18.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.379][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:18.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:18.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.385][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:18.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:18.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:18.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:18.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:18.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:18.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:18.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:18.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.405][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:18.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:18.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.409][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:18.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:18.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.416][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:18.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:18.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:18.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:18.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:18.430][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:18.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:18.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:18.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:18.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:18.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:18.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:18.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:18.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:18.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:18.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:18.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:18.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:18.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:18.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:18.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:18.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:18.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:18.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:18.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:18.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:18.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:18.525][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2024-06-15 16:23:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:18.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:18.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:18.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:18.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:18.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:18.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:18.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:18.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:18.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:18.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:18.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:18.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:18.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:18.569][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2024-06-15 16:23:18.570][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:18.573][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2024-06-15 16:23:18.576][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:18.578][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:18.580][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:18.581][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:18.583][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:18.585][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:18.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:18.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:18.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:18.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:18.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:18.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:18.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:18.611][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2024-06-15 16:23:18.614][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:18.616][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:18.618][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2024-06-15 16:23:18.978][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2024-06-15 16:23:19.340][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:19.344][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2024-06-15 16:23:19.350][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2024-06-15 16:23:19.356][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2024-06-15 16:23:19.360][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:19.362][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:19.364][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:19.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:19.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:19.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:19.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:19.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:19.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:19.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:19.389][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:19.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:19.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.392][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:19.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.399][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:19.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:19.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.410][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:19.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:19.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:19.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:19.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.421][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:19.422][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:19.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.425][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:19.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:19.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:19.433][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:19.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.435][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:19.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:19.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.442][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:19.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:19.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.448][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:19.449][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:19.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:19.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.469][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:19.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:19.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.480][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:19.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:19.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.484][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:19.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:19.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.490][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:19.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:19.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.494][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:19.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:19.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:19.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:19.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:19.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:19.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:19.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:19.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:19.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:19.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:19.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:19.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:19.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:19.566][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2024-06-15 16:23:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:19.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:19.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:19.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:19.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:19.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:19.590][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:19.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:19.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:19.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:19.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:19.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:19.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:19.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:19.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.618][private$selectFields]
biodb.TRACE[2024-06-15 16:23:19.619][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:19.620][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:19.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.635][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.642][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:19.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-06-15 16:23:19.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:19.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:19.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:19.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:19.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:19.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:19.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.702][private$selectFields]
biodb.TRACE[2024-06-15 16:23:19.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:19.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:19.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.724][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.726][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.734][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:19.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-06-15 16:23:19.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:19.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:19.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:19.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:19.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:19.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:19.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.801][private$selectFields]
biodb.TRACE[2024-06-15 16:23:19.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:19.805][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:19.806][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.823][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:19.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.832][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:19.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-06-15 16:23:19.857][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:19.859][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:23:19.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:19.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:19.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:19.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:20.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:20.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:20.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:20.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:20.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:20.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:20.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:20.068][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:20.073][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:20.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-15 16:23:20.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:20.093][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-15 16:23:20.099][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:20.106][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:20.108][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-15 16:23:20.111][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:20.128][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-15 16:23:20.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:20.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:20.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:20.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:20.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:20.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:20.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:20.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:20.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:20.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:20.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:20.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:20.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:20.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:20.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:20.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:20.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:20.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:20.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:20.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:20.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:20.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:20.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:20.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:20.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:20.261][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:20.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:20.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:20.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:20.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:20.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:20.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:20.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:20.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.307][private$selectFields]
biodb.TRACE[2024-06-15 16:23:20.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:20.311][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:20.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.330][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.334][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.341][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.343][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:20.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.363][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-06-15 16:23:20.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:20.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:20.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:20.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:20.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:20.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:20.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:20.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.441][private$selectFields]
biodb.TRACE[2024-06-15 16:23:20.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:20.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:20.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.470][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.479][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:20.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.498][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:23:20.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:20.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:20.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:20.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:20.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:20.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:20.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.532][private$selectFields]
biodb.TRACE[2024-06-15 16:23:20.533][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:20.534][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:20.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.541][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.548][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:20.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.555][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:20.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:20.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:20.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:20.574][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-06-15 16:23:20.575][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:20.577][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:20.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:20.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:20.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:20.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:20.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:20.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:20.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:20.605][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:20.610][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:20.612][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:20.614][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:20.971][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:21.341][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:21.346][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2024-06-15 16:23:21.352][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2024-06-15 16:23:21.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:21.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:21.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:21.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:21.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:21.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:21.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:21.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:21.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:21.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:21.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:21.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:21.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:21.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:21.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:21.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:21.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:21.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:21.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:21.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:21.421][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2024-06-15 16:23:21.423][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:21.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2024-06-15 16:23:21.429][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:21.431][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:21.434][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:21.436][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:21.438][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:21.440][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:21.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:21.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:21.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:21.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:21.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:21.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:21.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:21.468][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2024-06-15 16:23:21.473][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:21.475][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:21.477][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2024-06-15 16:23:21.838][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2024-06-15 16:23:22.192][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:22.196][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2024-06-15 16:23:22.203][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2024-06-15 16:23:22.209][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2024-06-15 16:23:22.212][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:22.215][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:22.218][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:22.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:22.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:22.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:22.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:22.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:22.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:22.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:22.244][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:22.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:22.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:22.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:22.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.260][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:22.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:22.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:22.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.275][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:22.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:22.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.281][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:22.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:22.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:22.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:22.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:22.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:22.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:22.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.324][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:22.326][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:22.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.330][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.332][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:22.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:22.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.340][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:22.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:22.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.349][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.358][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:22.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:22.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.362][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:22.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:22.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.369][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:22.370][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:22.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:22.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:22.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:22.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:22.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:22.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:22.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:22.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:22.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:22.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:22.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:22.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:22.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:22.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:22.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:22.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:22.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:22.460][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2024-06-15 16:23:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:22.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:22.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:22.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:22.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:22.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:22.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:22.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:22.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:22.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:22.502][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2024-06-15 16:23:22.504][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:22.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2024-06-15 16:23:22.509][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:22.510][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:22.512][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:22.513][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:22.514][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:22.515][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:22.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:22.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:22.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:22.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:22.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:22.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:22.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:22.534][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2024-06-15 16:23:22.538][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:22.539][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:22.542][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2024-06-15 16:23:22.899][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2024-06-15 16:23:23.463][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:23.467][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2024-06-15 16:23:23.474][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2024-06-15 16:23:23.480][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2024-06-15 16:23:23.484][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:23.487][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:23.489][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:23.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:23.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:23.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:23.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:23.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:23.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:23.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:23.516][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:23.517][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:23.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:23.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:23.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.529][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:23.532][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:23.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:23.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.545][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:23.547][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:23.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.550][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:23.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:23.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:23.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.574][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:23.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:23.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.580][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:23.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:23.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:23.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.595][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.597][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:23.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:23.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.605][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:23.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:23.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.611][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.626][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:23.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:23.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:23.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:23.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.641][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:23.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:23.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:23.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:23.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:23.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:23.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:23.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:23.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:23.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:23.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:23.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:23.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:23.743][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2024-06-15 16:23:23.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:23.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:23.768][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:23.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:23.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:23.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:23.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:23.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:23.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:23.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:23.809][private$selectFields]
biodb.TRACE[2024-06-15 16:23:23.811][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:23.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:23.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:23.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:23.833][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:23.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.842][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:23.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.865][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-06-15 16:23:23.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:23.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:23.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:23.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:23.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:23.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:23.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:23.909][private$selectFields]
biodb.TRACE[2024-06-15 16:23:23.910][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:23.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:23.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:23.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:23.934][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:23.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.951][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.956][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:23.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:23.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:23.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:23.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-06-15 16:23:23.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:23.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:23.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:23.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:23.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:23.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:23.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:23.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:24.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:24.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:24.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:24.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:24.011][private$selectFields]
biodb.TRACE[2024-06-15 16:23:24.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:24.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:24.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:24.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:24.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:24.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:24.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:24.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:24.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:24.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:24.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:24.041][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:24.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:24.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:24.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:24.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:24.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:24.066][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-06-15 16:23:24.067][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:24.069][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:24.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:24.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:24.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:24.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:24.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:24.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:24.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:24.095][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:24.099][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:24.100][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:24.103][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:24.462][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:24.831][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:24.836][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2024-06-15 16:23:24.844][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2024-06-15 16:23:24.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:24.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:24.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:24.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:24.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:24.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:24.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:24.872][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2024-06-15 16:23:24.873][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:24.875][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2024-06-15 16:23:24.877][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:24.879][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:24.880][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:24.882][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:24.883][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:24.884][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:24.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:24.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:24.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:24.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:24.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:24.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:24.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:24.904][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2024-06-15 16:23:24.908][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:24.910][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:24.911][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2024-06-15 16:23:25.266][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2024-06-15 16:23:25.626][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:25.629][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2024-06-15 16:23:25.635][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2024-06-15 16:23:25.639][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2024-06-15 16:23:25.642][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:25.644][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:25.646][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:25.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:25.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:25.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:25.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:25.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:25.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:25.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:25.668][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:25.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:25.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:25.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.681][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:25.683][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:25.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.688][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:25.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:25.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.694][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:25.696][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:25.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:25.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:25.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:25.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:25.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:25.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:25.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:25.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.723][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:25.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:25.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:25.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:25.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.735][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:25.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:25.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.740][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:25.742][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:25.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.746][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:25.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.752][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.763][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:25.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:25.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:25.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:25.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.774][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:25.775][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:25.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:25.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:25.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.785][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:25.786][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:25.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.789][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:25.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:25.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:25.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:25.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:25.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:25.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:25.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:25.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:25.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:25.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:25.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:25.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:25.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:25.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:25.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:25.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:25.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:25.859][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2024-06-15 16:23:25.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:25.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:25.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:25.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:25.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:25.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:25.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:25.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:25.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:25.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:25.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:25.907][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2024-06-15 16:23:25.909][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:25.913][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2024-06-15 16:23:25.915][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:25.918][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:25.920][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:25.922][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:25.924][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:25.926][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:25.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:25.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:25.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:25.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:25.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:25.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:25.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:25.951][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2024-06-15 16:23:25.956][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:25.958][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:25.969][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2024-06-15 16:23:26.327][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2024-06-15 16:23:26.689][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:26.693][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2024-06-15 16:23:26.699][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2024-06-15 16:23:26.705][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2024-06-15 16:23:26.708][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:26.711][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:26.713][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:26.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:26.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:26.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:26.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:26.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:26.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:26.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:26.739][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:26.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:26.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:26.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:26.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.755][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:26.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:26.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.760][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:26.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:26.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.770][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:26.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:26.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:26.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:26.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:26.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:26.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:26.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.807][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:26.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.817][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:26.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:26.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.824][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:26.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:26.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.832][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:26.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:26.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.842][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:26.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:26.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.851][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:26.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:26.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:26.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:26.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.870][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:26.872][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:26.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:26.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:26.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:26.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.894][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:26.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:26.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:26.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:26.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:26.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:26.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:26.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:26.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:26.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:26.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:26.988][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2024-06-15 16:23:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:26.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:26.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:27.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:27.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:27.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:27.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:27.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:27.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:27.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:27.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:27.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:27.043][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2024-06-15 16:23:27.045][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:27.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2024-06-15 16:23:27.051][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:27.054][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:27.056][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:27.058][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:27.060][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:27.062][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:27.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:27.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:27.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:27.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:27.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:27.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:27.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:27.093][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2024-06-15 16:23:27.098][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:27.100][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:27.103][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2024-06-15 16:23:27.461][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2024-06-15 16:23:27.815][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:27.818][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2024-06-15 16:23:27.825][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2024-06-15 16:23:27.831][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2024-06-15 16:23:27.835][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:27.837][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:27.840][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:27.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:27.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:27.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:27.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:27.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:27.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:27.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:27.865][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:27.866][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:27.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.876][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:27.877][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:27.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:27.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:27.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.886][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:27.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:27.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:27.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:27.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:27.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:27.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:27.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.910][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:27.911][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:27.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.920][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:27.922][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:27.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.926][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:27.927][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:27.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:27.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:27.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:27.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:27.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:27.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.947][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:27.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:27.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.951][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.958][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:27.959][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:27.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:27.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:27.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:27.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:27.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:27.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:27.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:27.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:27.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:27.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:27.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:27.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:28.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:28.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:28.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:28.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:28.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:28.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:28.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:28.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:28.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:28.053][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2024-06-15 16:23:28.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:28.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:28.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:28.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:28.069][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:28.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:28.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.106][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.108][private$selectFields]
biodb.TRACE[2024-06-15 16:23:28.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:28.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:28.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.124][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.129][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.130][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:28.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-06-15 16:23:28.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.198][private$selectFields]
biodb.TRACE[2024-06-15 16:23:28.200][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:28.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:28.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.227][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.237][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-06-15 16:23:28.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:28.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.296][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.297][private$selectFields]
biodb.TRACE[2024-06-15 16:23:28.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:28.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:28.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.306][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.318][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:28.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-06-15 16:23:28.342][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:28.343][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:23:28.355][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:28.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:28.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:28.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:28.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:28.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:23:28.378][biodb::testThat]
biodb.INFO [2024-06-15 16:23:28.380][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-06-15 16:23:28.381][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:23:28.382][biodb::testThat]
biodb.TRACE[2024-06-15 16:23:28.387][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:23:28.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:23:28.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:23:28.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:23:28.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.403][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:23:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:23:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:28.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:28.529][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:28.535][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:28.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-15 16:23:28.540][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:28.543][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-15 16:23:28.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:28.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:28.580][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:28.586][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:28.587][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-15 16:23:28.589][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:28.593][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-15 16:23:28.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:28.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:28.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:28.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:28.697][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:28.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.742][private$selectFields]
biodb.TRACE[2024-06-15 16:23:28.743][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:28.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:28.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.755][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.767][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.777][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:28.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-15 16:23:28.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.845][private$selectFields]
biodb.TRACE[2024-06-15 16:23:28.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:28.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:28.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.866][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.879][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:28.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:23:28.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:28.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:28.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:28.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:28.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:28.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:28.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:28.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.948][private$selectFields]
biodb.TRACE[2024-06-15 16:23:28.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:28.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:28.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.974][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:28.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:28.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:28.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-15 16:23:29.010][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:29.012][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:29.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:29.042][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:29.048][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:29.051][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-06-15 16:23:29.053][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:29.057][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-06-15 16:23:29.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:29.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:29.153][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:29.159][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:29.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-06-15 16:23:29.164][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:29.170][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-06-15 16:23:29.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:29.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:29.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:29.324][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:29.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.374][private$selectFields]
biodb.TRACE[2024-06-15 16:23:29.376][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:29.378][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:29.379][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.387][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.397][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.399][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.404][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.406][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:29.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.429][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-06-15 16:23:29.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.468][private$selectFields]
biodb.TRACE[2024-06-15 16:23:29.469][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:29.471][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:29.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.490][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.497][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.499][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-06-15 16:23:29.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.556][private$selectFields]
biodb.TRACE[2024-06-15 16:23:29.558][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:29.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:29.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.573][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:29.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.580][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-06-15 16:23:29.601][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:29.603][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:29.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:29.624][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:29.630][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:29.632][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-06-15 16:23:29.635][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:29.639][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-06-15 16:23:29.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:29.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:29.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:29.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:29.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:29.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:29.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:29.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:29.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:29.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:29.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:29.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:29.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:29.779][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:29.785][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:29.787][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:29.790][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:30.166][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:30.606][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:30.609][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2024-06-15 16:23:30.617][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2024-06-15 16:23:30.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:30.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:30.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:30.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:30.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:30.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:30.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:30.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:30.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:30.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:30.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:30.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:30.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:30.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:30.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:30.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:30.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:30.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:30.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:30.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:30.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:30.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:30.671][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2024-06-15 16:23:30.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:30.675][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2024-06-15 16:23:30.676][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:30.678][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:30.679][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:30.681][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:30.682][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:30.683][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:30.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:30.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:30.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:30.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:30.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:30.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:30.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:30.701][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2024-06-15 16:23:30.704][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:30.705][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:30.707][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2024-06-15 16:23:31.067][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2024-06-15 16:23:31.429][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:31.433][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2024-06-15 16:23:31.440][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2024-06-15 16:23:31.445][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2024-06-15 16:23:31.449][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:31.451][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:31.454][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:31.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:31.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:31.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:31.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:31.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:31.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:31.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:31.480][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:31.482][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:31.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:31.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.509][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:31.512][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:31.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.518][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:31.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:31.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.525][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:31.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:31.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.530][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:31.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:31.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:31.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:31.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:31.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:31.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:31.556][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:31.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.559][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:31.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:31.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:31.571][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:31.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.574][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:31.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.584][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:31.586][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:31.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:31.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:31.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:31.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:31.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:31.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.613][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:31.615][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:31.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:31.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.627][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:31.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:31.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:31.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:31.644][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:31.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.647][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:31.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:31.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:31.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:31.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:31.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:31.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:31.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:31.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:31.728][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2024-06-15 16:23:31.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:31.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:31.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:31.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:31.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:31.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:31.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:31.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:31.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:31.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:31.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:31.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:31.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:31.770][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2024-06-15 16:23:31.772][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:31.776][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2024-06-15 16:23:31.778][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:31.781][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:31.783][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:31.785][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:31.788][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:31.790][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:31.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:31.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:31.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:31.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:31.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:31.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:31.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:31.820][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2024-06-15 16:23:31.826][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:31.828][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:31.831][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2024-06-15 16:23:32.195][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2024-06-15 16:23:32.562][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:32.566][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2024-06-15 16:23:32.572][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2024-06-15 16:23:32.578][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2024-06-15 16:23:32.581][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:32.584][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:32.586][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:32.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:32.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:32.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:32.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:32.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:32.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:32.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:32.611][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:32.613][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:32.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.617][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.626][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:32.628][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:32.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.631][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:32.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:32.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.641][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:32.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:32.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:32.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:32.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:32.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:32.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.665][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:32.666][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:32.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:32.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:32.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:32.676][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:32.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:32.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:32.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.685][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:32.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:32.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:32.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:32.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:32.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:32.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.708][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:32.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:32.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:32.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:32.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.719][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:32.720][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:32.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.723][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:32.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:32.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:32.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:32.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:32.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:32.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:32.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:32.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:32.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:32.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:32.815][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2024-06-15 16:23:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:32.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:32.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:32.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:32.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:32.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:32.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:32.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:32.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:32.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:32.877][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2024-06-15 16:23:32.879][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:32.882][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2024-06-15 16:23:32.885][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:32.887][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:32.889][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:32.891][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:32.893][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:32.894][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:32.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:32.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:32.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:32.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:32.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:32.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:32.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:32.920][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2024-06-15 16:23:32.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:32.926][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:32.929][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2024-06-15 16:23:33.286][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2024-06-15 16:23:33.642][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:33.646][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2024-06-15 16:23:33.653][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2024-06-15 16:23:33.659][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2024-06-15 16:23:33.663][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:33.665][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:33.668][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:33.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:33.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:33.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:33.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:33.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:33.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:33.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:33.693][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:33.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:33.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.707][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:33.708][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:33.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.712][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:33.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.717][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:33.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:33.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:33.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:33.729][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:33.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.731][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:33.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:33.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.738][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:33.739][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:33.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:33.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:33.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:33.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.754][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:33.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.761][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:33.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:33.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.766][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:33.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:33.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:33.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:33.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.781][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:33.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:33.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.785][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.792][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:33.793][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:33.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:33.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:33.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.803][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:33.804][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:33.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.806][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:33.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:33.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:33.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:33.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:33.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:33.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:33.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:33.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:33.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:33.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:33.864][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2024-06-15 16:23:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:33.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:33.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:33.880][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:33.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:33.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:33.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:33.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:33.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:33.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:33.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:33.908][private$selectFields]
biodb.TRACE[2024-06-15 16:23:33.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:33.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:33.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:33.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.917][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:33.924][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:33.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.931][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.947][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-06-15 16:23:33.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:33.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:33.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:33.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:33.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:33.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:33.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:33.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:33.974][private$selectFields]
biodb.TRACE[2024-06-15 16:23:33.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:33.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:33.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:33.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:33.989][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:33.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:33.994][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:33.996][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2024-06-15 16:23:34.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:34.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:34.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:34.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:34.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:34.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:34.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:34.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.055][private$selectFields]
biodb.TRACE[2024-06-15 16:23:34.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:34.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:34.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.072][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.078][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:34.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2024-06-15 16:23:34.096][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:34.097][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:23:34.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:34.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:34.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:34.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:34.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:34.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:34.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:34.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:34.193][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:34.197][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:34.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-15 16:23:34.200][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:34.202][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-15 16:23:34.206][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:34.210][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:34.212][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-15 16:23:34.213][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:34.216][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-15 16:23:34.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:34.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:34.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:34.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:34.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:34.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:34.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:34.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:34.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:34.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:34.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:34.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:34.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:34.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:34.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:34.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:34.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:34.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:34.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:34.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:34.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:34.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:34.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:34.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:34.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:34.309][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:34.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:34.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:34.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:34.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:34.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:34.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:34.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.336][private$selectFields]
biodb.TRACE[2024-06-15 16:23:34.337][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:34.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:34.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.353][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.360][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-06-15 16:23:34.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:34.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:34.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:34.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:34.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:34.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:34.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:34.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.421][private$selectFields]
biodb.TRACE[2024-06-15 16:23:34.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:34.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:34.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.432][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.437][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.445][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.447][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:34.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:23:34.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:34.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:34.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:34.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:34.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:34.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:34.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.497][private$selectFields]
biodb.TRACE[2024-06-15 16:23:34.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:34.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:34.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.506][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.511][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.513][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:34.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.518][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.519][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:34.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:34.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:34.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-06-15 16:23:34.544][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:34.545][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:34.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:34.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:34.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:34.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:34.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:34.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:34.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:34.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:34.567][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:34.569][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:34.571][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:34.935][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:35.294][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:35.297][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2024-06-15 16:23:35.303][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2024-06-15 16:23:35.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:35.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:35.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:35.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:35.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:35.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:35.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:35.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:35.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:35.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:35.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:35.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:35.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:35.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:35.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:35.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:35.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:35.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:35.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:35.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:35.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:35.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:35.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:35.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:35.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:35.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:35.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:35.411][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2024-06-15 16:23:35.412][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:35.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2024-06-15 16:23:35.416][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:35.417][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:35.419][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:35.420][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:35.421][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:35.422][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:35.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:35.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:35.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:35.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:35.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:35.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:35.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:35.441][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2024-06-15 16:23:35.444][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:35.445][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:35.447][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2024-06-15 16:23:35.803][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2024-06-15 16:23:36.163][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:36.167][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2024-06-15 16:23:36.174][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2024-06-15 16:23:36.179][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2024-06-15 16:23:36.183][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:36.185][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:36.188][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:36.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:36.209][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:36.211][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:36.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:36.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.220][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:36.221][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:36.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.225][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:36.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:36.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.230][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:36.232][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:36.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:36.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:36.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.246][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:36.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:36.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:36.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:36.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:36.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.268][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:36.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.273][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:36.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:36.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:36.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:36.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.288][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.294][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:36.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:36.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:36.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.305][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:36.307][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:36.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.311][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:36.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:36.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.316][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:36.317][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:36.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:36.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:36.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:36.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:36.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:36.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:36.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:36.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:36.379][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2024-06-15 16:23:36.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:36.399][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:36.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:36.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.447][private$selectFields]
biodb.TRACE[2024-06-15 16:23:36.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:36.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:36.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.475][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.483][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.485][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-06-15 16:23:36.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:36.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.548][private$selectFields]
biodb.TRACE[2024-06-15 16:23:36.549][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:36.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:36.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.564][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.570][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:36.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-06-15 16:23:36.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:36.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.613][private$selectFields]
biodb.TRACE[2024-06-15 16:23:36.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:36.615][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:36.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.629][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:36.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.635][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:36.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2024-06-15 16:23:36.653][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:36.654][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:36.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:36.673][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:36.676][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:36.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-06-15 16:23:36.680][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:36.682][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-06-15 16:23:36.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:36.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:36.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:36.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:36.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:36.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:36.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:36.810][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2024-06-15 16:23:36.812][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:36.815][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2024-06-15 16:23:36.818][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:36.820][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:36.822][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:36.823][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:36.825][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:36.826][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:36.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:36.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:36.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:36.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:36.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:36.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:36.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:36.845][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2024-06-15 16:23:36.850][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:36.852][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:36.854][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2024-06-15 16:23:37.235][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2024-06-15 16:23:37.603][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:37.608][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2024-06-15 16:23:37.615][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2024-06-15 16:23:37.621][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2024-06-15 16:23:37.625][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:37.627][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:37.629][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:37.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:37.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:37.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:37.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:37.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:37.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:37.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:37.648][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:37.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:37.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.651][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:37.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:37.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.658][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:37.660][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:37.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:37.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:37.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.669][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:37.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:37.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:37.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:37.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:37.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:37.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:37.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:37.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:37.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:37.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.700][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:37.702][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:37.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.706][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:37.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:37.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.711][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:37.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.726][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:37.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:37.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:37.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:37.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.737][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:37.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:37.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.740][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:37.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:37.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:37.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:37.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:37.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:37.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:37.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:37.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:37.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:37.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:37.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:37.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:37.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:37.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:37.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:37.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:37.836][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2024-06-15 16:23:37.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:37.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:37.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:37.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:37.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:37.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:37.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:37.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:37.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:37.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:37.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:37.873][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2024-06-15 16:23:37.875][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:37.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2024-06-15 16:23:37.880][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:37.881][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:37.883][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:37.884][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:37.886][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:37.888][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:37.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:37.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:37.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:37.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:37.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:37.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:37.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:37.913][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2024-06-15 16:23:37.918][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:37.919][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:37.922][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2024-06-15 16:23:38.284][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2024-06-15 16:23:38.650][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:38.654][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2024-06-15 16:23:38.661][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2024-06-15 16:23:38.667][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2024-06-15 16:23:38.670][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:38.673][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:38.675][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:38.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:38.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:38.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:38.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:38.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:38.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:38.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:38.702][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:38.705][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:38.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:38.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:38.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.717][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:38.718][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:38.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:38.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:38.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.728][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:38.729][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:38.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.731][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:38.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:38.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:38.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:38.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.747][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:38.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:38.759][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:38.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.768][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:38.770][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:38.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.774][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:38.775][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:38.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.779][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:38.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:38.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.801][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:38.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:38.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.807][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:38.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:38.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.815][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:38.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:38.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:38.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:38.829][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:38.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:38.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:38.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:38.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:38.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:38.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:38.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:38.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:38.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:38.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:38.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:38.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:38.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:38.909][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2024-06-15 16:23:38.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:38.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:38.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:38.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:38.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:38.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:38.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:38.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:38.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:38.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:38.953][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2024-06-15 16:23:38.954][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:38.957][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2024-06-15 16:23:38.960][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:38.962][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:38.964][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:38.966][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:38.967][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:38.969][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:38.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:38.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:38.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:38.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:38.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:38.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:38.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:38.995][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2024-06-15 16:23:38.999][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:39.001][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:39.004][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2024-06-15 16:23:39.367][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2024-06-15 16:23:39.810][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:39.815][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2024-06-15 16:23:39.822][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2024-06-15 16:23:39.827][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2024-06-15 16:23:39.831][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:39.834][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:39.837][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:39.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:39.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:39.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:39.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:39.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:39.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:39.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:39.865][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:39.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:39.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.872][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:39.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:39.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.882][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:39.885][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:39.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:39.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.914][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:39.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:39.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:39.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:39.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:39.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:39.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:39.950][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:39.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.964][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:39.966][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:39.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.972][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:39.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.980][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:39.983][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:39.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.989][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:39.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:39.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:39.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:39.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:39.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:40.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:40.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:40.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.013][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:40.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:40.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:40.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.028][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:40.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:40.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.036][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:40.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:40.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:40.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:40.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.049][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:40.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:40.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:40.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:40.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:40.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:40.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:40.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:40.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:40.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:40.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:40.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:40.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:40.139][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2024-06-15 16:23:40.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:40.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:40.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:40.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:40.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:40.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:40.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:40.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:40.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:40.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:40.189][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2024-06-15 16:23:40.191][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:40.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2024-06-15 16:23:40.197][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:40.199][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:40.201][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:40.202][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:40.203][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:40.204][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:40.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:40.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:40.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:40.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:40.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:40.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:40.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:40.222][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2024-06-15 16:23:40.226][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:40.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:40.229][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2024-06-15 16:23:40.588][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2024-06-15 16:23:40.949][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:40.953][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2024-06-15 16:23:40.960][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2024-06-15 16:23:40.966][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2024-06-15 16:23:40.969][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:40.971][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:40.974][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:40.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:40.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:40.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:40.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:40.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:40.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:40.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:40.999][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:41.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:41.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:41.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.013][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:41.015][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:41.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.024][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:41.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:41.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:41.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:41.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:41.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:41.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:41.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:41.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.045][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:41.046][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:41.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:41.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:41.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.059][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.060][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:41.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:41.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:41.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:41.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.081][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:41.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:41.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:41.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:41.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:41.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.095][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:41.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.101][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:41.103][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:41.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:41.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:41.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:41.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:41.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:41.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:41.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:41.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:41.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:41.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:41.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:41.175][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2024-06-15 16:23:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:41.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:41.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:41.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:41.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:41.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:41.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:41.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:41.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:41.232][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2024-06-15 16:23:41.234][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:41.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2024-06-15 16:23:41.239][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:41.241][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:41.243][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:41.245][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:41.246][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:41.248][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:41.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:41.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:41.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:41.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:41.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:41.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:41.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:41.268][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2024-06-15 16:23:41.271][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:41.272][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:41.274][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2024-06-15 16:23:41.632][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2024-06-15 16:23:41.987][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:41.991][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2024-06-15 16:23:41.996][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2024-06-15 16:23:42.001][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2024-06-15 16:23:42.004][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:42.006][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:42.009][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:42.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:42.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:42.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:42.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:42.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:42.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:42.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:42.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:42.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:42.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:42.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.050][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:42.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:42.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:42.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.064][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:42.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:42.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:42.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:42.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:42.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:42.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:42.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:42.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:42.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:42.105][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:42.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.111][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:42.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:42.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.119][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:42.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:42.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.128][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.142][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:42.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:42.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:42.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.156][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:42.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:42.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.161][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:42.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:42.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:42.169][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:42.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:42.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:42.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:42.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:42.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:42.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:42.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:42.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:42.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:42.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:42.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:42.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:42.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:42.246][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2024-06-15 16:23:42.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:42.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:42.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:42.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:42.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:42.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:42.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:42.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:42.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:42.280][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2024-06-15 16:23:42.281][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:42.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2024-06-15 16:23:42.285][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:42.286][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:42.288][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:42.289][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:42.290][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:42.292][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:42.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:42.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:42.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:42.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:42.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:42.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:42.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:42.315][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2024-06-15 16:23:42.320][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:42.322][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:42.325][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2024-06-15 16:23:42.689][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2024-06-15 16:23:43.048][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:43.053][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2024-06-15 16:23:43.060][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2024-06-15 16:23:43.066][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2024-06-15 16:23:43.069][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:43.072][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:43.074][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:43.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:43.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:43.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:43.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:43.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:43.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:43.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:43.102][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:43.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:43.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.108][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:43.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:43.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.117][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:43.119][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:43.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.132][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:43.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:43.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.147][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:43.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:43.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:43.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:43.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:43.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:43.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.166][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:43.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.176][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:43.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:43.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.182][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:43.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:43.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.189][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:43.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.197][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.209][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:43.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:43.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:43.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.224][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:43.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:43.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:43.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:43.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:43.277][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:43.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.280][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:43.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:43.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:43.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:43.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:43.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:43.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:43.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:43.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:43.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:43.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:43.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:43.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:43.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:43.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:43.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:43.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:43.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:43.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:43.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:43.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:43.364][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2024-06-15 16:23:43.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:43.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:43.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:43.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:43.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:43.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:43.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:43.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:43.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:43.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:43.406][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2024-06-15 16:23:43.407][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:43.409][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2024-06-15 16:23:43.410][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:43.412][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:43.413][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:43.415][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:43.416][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:43.417][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:43.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:43.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:43.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:43.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:43.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:43.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:43.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:43.438][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2024-06-15 16:23:43.443][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:43.444][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:43.446][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2024-06-15 16:23:43.807][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2024-06-15 16:23:44.166][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:44.170][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2024-06-15 16:23:44.177][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2024-06-15 16:23:44.183][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2024-06-15 16:23:44.187][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:44.190][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:44.192][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:44.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:44.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:44.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:44.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:44.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:44.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:44.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:44.222][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:44.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:44.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:44.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.239][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:44.241][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:44.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:44.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.256][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:44.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:44.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:44.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:44.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:44.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:44.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:44.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:44.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:44.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.307][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:44.309][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:44.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.315][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:44.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.323][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:44.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.347][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:44.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:44.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.353][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:44.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.364][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:44.366][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:44.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:44.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:44.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:44.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:44.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:44.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:44.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:44.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:44.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:44.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:44.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:44.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:44.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:44.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:44.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:44.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:44.475][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2024-06-15 16:23:44.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:44.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:44.501][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:44.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:44.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:44.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:44.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:44.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:44.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:44.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.546][private$selectFields]
biodb.TRACE[2024-06-15 16:23:44.548][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:44.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:44.552][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.572][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.581][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-06-15 16:23:44.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:44.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:44.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:44.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:44.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:44.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:44.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.650][private$selectFields]
biodb.TRACE[2024-06-15 16:23:44.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:44.663][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:44.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.689][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.699][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2024-06-15 16:23:44.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:44.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:44.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:44.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:44.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:44.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:44.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:44.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.769][private$selectFields]
biodb.TRACE[2024-06-15 16:23:44.771][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:44.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:44.775][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.795][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:44.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.804][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.831][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2024-06-15 16:23:44.832][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:44.834][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:23:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:44.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:44.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:44.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:44.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:23:44.882][biodb::testThat]
biodb.INFO [2024-06-15 16:23:44.884][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-06-15 16:23:44.886][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:23:44.887][biodb::testThat]
biodb.TRACE[2024-06-15 16:23:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:23:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:23:44.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:23:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:23:44.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:23:44.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:23:44.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:44.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:44.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:45.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:45.050][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:45.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:45.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-15 16:23:45.061][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:45.064][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-15 16:23:45.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:45.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:45.118][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:45.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-15 16:23:45.122][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:45.126][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-15 16:23:45.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:45.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:45.223][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:45.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.254][private$selectFields]
biodb.TRACE[2024-06-15 16:23:45.256][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:45.257][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:45.258][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.268][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.271][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.279][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:45.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-15 16:23:45.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.353][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.354][private$selectFields]
biodb.TRACE[2024-06-15 16:23:45.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:45.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:45.358][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.371][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.376][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:45.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:23:45.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.429][private$selectFields]
biodb.TRACE[2024-06-15 16:23:45.430][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:45.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:45.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.445][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.448][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.454][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:45.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-15 16:23:45.478][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:45.480][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:45.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:45.511][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:45.516][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:45.518][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-06-15 16:23:45.520][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:45.523][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-06-15 16:23:45.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:45.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:45.607][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:45.613][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:45.615][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-06-15 16:23:45.617][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:45.621][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-06-15 16:23:45.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:45.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:45.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:45.750][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:45.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.779][private$selectFields]
biodb.TRACE[2024-06-15 16:23:45.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:45.782][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:45.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.803][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-06-15 16:23:45.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.849][private$selectFields]
biodb.TRACE[2024-06-15 16:23:45.850][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:45.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:45.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.865][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.871][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:45.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-06-15 16:23:45.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:45.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.928][private$selectFields]
biodb.TRACE[2024-06-15 16:23:45.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:45.930][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:45.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.941][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.943][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.944][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:45.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.950][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:45.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:45.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:45.967][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-06-15 16:23:45.968][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:45.969][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:45.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:45.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:45.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:45.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:45.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:45.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:45.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:45.988][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:45.992][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:45.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-06-15 16:23:45.995][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:45.997][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-06-15 16:23:46.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.291][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:46.297][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:46.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-06-15 16:23:46.301][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:46.304][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-06-15 16:23:46.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:46.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.425][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:46.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.460][private$selectFields]
biodb.TRACE[2024-06-15 16:23:46.461][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:46.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:46.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.474][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.477][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.483][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-06-15 16:23:46.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.528][private$selectFields]
biodb.TRACE[2024-06-15 16:23:46.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:46.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:46.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.541][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.553][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.563][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-06-15 16:23:46.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.632][private$selectFields]
biodb.TRACE[2024-06-15 16:23:46.634][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:46.635][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:46.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.652][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.656][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:46.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.665][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:46.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:46.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-06-15 16:23:46.693][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:46.695][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:23:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:46.867][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:46.873][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:46.876][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-15 16:23:46.879][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:46.882][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-15 16:23:46.888][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:46.894][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:46.896][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-15 16:23:46.899][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:46.903][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-15 16:23:46.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:46.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:46.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:46.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:46.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:46.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:46.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:46.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:46.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:46.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:47.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:47.052][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:47.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.096][private$selectFields]
biodb.TRACE[2024-06-15 16:23:47.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:47.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:47.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.118][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.122][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.140][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.143][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:47.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.170][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-06-15 16:23:47.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.214][private$selectFields]
biodb.TRACE[2024-06-15 16:23:47.216][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:47.218][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:47.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.239][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.249][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:47.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.275][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:23:47.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.304][private$selectFields]
biodb.TRACE[2024-06-15 16:23:47.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:47.307][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:47.308][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.320][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.326][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.328][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-06-15 16:23:47.352][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:47.354][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:47.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:47.377][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:47.381][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:47.383][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-06-15 16:23:47.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:47.387][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-06-15 16:23:47.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:47.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:47.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:47.481][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:47.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.512][private$selectFields]
biodb.TRACE[2024-06-15 16:23:47.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:47.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:47.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.526][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.532][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.535][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.541][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-06-15 16:23:47.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.585][private$selectFields]
biodb.TRACE[2024-06-15 16:23:47.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:47.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:47.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.601][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.607][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.628][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-06-15 16:23:47.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.667][private$selectFields]
biodb.TRACE[2024-06-15 16:23:47.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:47.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:47.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.690][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.698][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.700][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.709][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:47.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-06-15 16:23:47.734][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:47.735][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:47.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:47.761][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:47.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:23:47.769][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-06-15 16:23:47.771][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:23:47.774][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-06-15 16:23:47.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:47.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:47.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:47.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:47.914][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:47.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:47.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:47.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:47.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:47.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:47.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.952][private$selectFields]
biodb.TRACE[2024-06-15 16:23:47.953][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:47.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:47.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.968][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:47.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.974][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:47.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-06-15 16:23:47.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:47.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:47.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:48.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:48.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:48.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:48.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:48.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:48.020][private$selectFields]
biodb.TRACE[2024-06-15 16:23:48.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:48.023][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:48.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:48.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.037][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:48.040][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:48.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.046][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-06-15 16:23:48.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:48.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:48.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:48.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:48.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:48.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:48.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:48.107][private$selectFields]
biodb.TRACE[2024-06-15 16:23:48.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:48.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:48.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:48.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:48.131][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:48.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.139][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:48.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:48.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-06-15 16:23:48.166][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:48.168][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:23:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.214][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:48.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:23:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.236][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:48.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:48.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:48.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:48.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.248][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:23:48.252][biodb::testThat]
biodb.INFO [2024-06-15 16:23:48.253][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-06-15 16:23:48.254][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:23:48.255][biodb::testThat]
biodb.TRACE[2024-06-15 16:23:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:23:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:23:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:23:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:23:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:23:48.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:23:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:48.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:48.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:48.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:48.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:48.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:48.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:48.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:48.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:48.390][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:48.396][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:48.398][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:48.402][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:48.774][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:49.218][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:49.222][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2024-06-15 16:23:49.230][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2024-06-15 16:23:49.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:49.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:49.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:49.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:49.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:49.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:49.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:49.256][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2024-06-15 16:23:49.257][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:49.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2024-06-15 16:23:49.261][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:49.263][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:49.264][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:49.265][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:49.267][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:49.268][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:49.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:49.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:49.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:49.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:49.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:49.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:49.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:49.287][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2024-06-15 16:23:49.290][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:49.291][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:49.293][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2024-06-15 16:23:49.653][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2024-06-15 16:23:50.021][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:50.025][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2024-06-15 16:23:50.032][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2024-06-15 16:23:50.038][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2024-06-15 16:23:50.042][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:50.044][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:50.047][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:50.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:50.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:50.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:50.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:50.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:50.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:50.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:50.068][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:50.070][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:50.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:50.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.079][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:50.080][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:50.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.082][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.084][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:50.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:50.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.089][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:50.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:50.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.093][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:50.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:50.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:50.101][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:50.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:50.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:50.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:50.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:50.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:50.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:50.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.120][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:50.121][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:50.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:50.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.130][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:50.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:50.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.134][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.135][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:50.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:50.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:50.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.153][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:50.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:50.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.164][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:50.165][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:50.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.175][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:50.176][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:50.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:50.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:50.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:50.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:50.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:50.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:50.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:50.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:50.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:50.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:50.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:50.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:50.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:50.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:50.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:50.250][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2024-06-15 16:23:50.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:50.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:50.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:50.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:50.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:50.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:50.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:50.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:50.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:50.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:50.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:50.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:50.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:50.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:50.288][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2024-06-15 16:23:50.289][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:50.291][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2024-06-15 16:23:50.293][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:50.294][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:50.296][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:50.297][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:50.298][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:50.300][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:50.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:50.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:50.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:50.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:50.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:50.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:50.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:50.320][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2024-06-15 16:23:50.325][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:50.326][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:50.329][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2024-06-15 16:23:50.692][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2024-06-15 16:23:51.053][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:51.057][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2024-06-15 16:23:51.064][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2024-06-15 16:23:51.070][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2024-06-15 16:23:51.073][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:51.075][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:51.078][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:51.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:51.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:51.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:51.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:51.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:51.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:51.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:51.121][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:51.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:51.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.137][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:51.139][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:51.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:51.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.153][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:51.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:51.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.159][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:51.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.169][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:51.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:51.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:51.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.186][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:51.188][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:51.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:51.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:51.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:51.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:51.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.203][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.205][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:51.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.213][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:51.215][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:51.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:51.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:51.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:51.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.245][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:51.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:51.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.261][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:51.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:51.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.269][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:51.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.277][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:51.279][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:51.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:51.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:51.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:51.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:51.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:51.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:51.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:51.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:51.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:51.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:51.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:51.356][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2024-06-15 16:23:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:51.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:51.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:51.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:51.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:51.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:51.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:51.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:51.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:51.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:51.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:51.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:51.387][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2024-06-15 16:23:51.389][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:51.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2024-06-15 16:23:51.395][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:51.397][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:51.399][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:51.401][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:51.403][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:51.405][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:51.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:51.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:51.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:51.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:51.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:51.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:51.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:51.431][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2024-06-15 16:23:51.434][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:51.435][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:51.437][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2024-06-15 16:23:51.797][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2024-06-15 16:23:52.159][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:52.164][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2024-06-15 16:23:52.240][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2024-06-15 16:23:52.246][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2024-06-15 16:23:52.250][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:52.252][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:52.254][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:52.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:52.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:52.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:52.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:52.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:52.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:52.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:52.281][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:52.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:52.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.285][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:52.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:52.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.292][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:52.293][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:52.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:52.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:52.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.303][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:52.304][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:52.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:52.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:52.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:52.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:52.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.336][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:52.337][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:52.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:52.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.351][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:52.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:52.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.357][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:52.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:52.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:52.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:52.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:52.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:52.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:52.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:52.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.379][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:52.380][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:52.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.382][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:52.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.389][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:52.391][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:52.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.404][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:52.406][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:52.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:52.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:52.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:52.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:52.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:52.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:52.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:52.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:52.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:52.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:52.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:52.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:52.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:52.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:52.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:52.514][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2024-06-15 16:23:52.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:52.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:52.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:52.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:52.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:52.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:52.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:52.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:52.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:52.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:52.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:52.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:52.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:52.546][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2024-06-15 16:23:52.548][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:52.550][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2024-06-15 16:23:52.551][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:52.553][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:52.554][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:52.556][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:52.557][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:52.558][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:52.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:52.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:52.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:52.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:52.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:52.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:52.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:52.577][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2024-06-15 16:23:52.580][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:52.581][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:52.583][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2024-06-15 16:23:52.939][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2024-06-15 16:23:53.300][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:53.304][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2024-06-15 16:23:53.311][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2024-06-15 16:23:53.316][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2024-06-15 16:23:53.320][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:53.322][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:53.325][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:53.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:53.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:53.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:53.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:53.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:53.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:53.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:53.351][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:53.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:53.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.356][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:53.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.366][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:53.368][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:53.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:53.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.382][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:53.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:53.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.387][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:53.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:53.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:53.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:53.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.405][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:53.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:53.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:53.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:53.417][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:53.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.420][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:53.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:53.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.424][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:53.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.435][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:53.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:53.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.441][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:53.443][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:53.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.445][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:53.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:53.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.452][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:53.454][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:53.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:53.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:53.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:53.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:53.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.466][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:53.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:53.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:53.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:53.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:53.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:53.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:53.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:53.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:53.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:53.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:53.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:53.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:53.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:53.540][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2024-06-15 16:23:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:53.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:53.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:53.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:53.563][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:23:53.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:53.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:53.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:53.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:53.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:53.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:53.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.597][private$selectFields]
biodb.TRACE[2024-06-15 16:23:53.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:53.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:53.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.611][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.613][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.620][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-06-15 16:23:53.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:53.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:53.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:53.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:53.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:53.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:53.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.665][private$selectFields]
biodb.TRACE[2024-06-15 16:23:53.666][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:53.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:53.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.685][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.692][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.694][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:53.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-06-15 16:23:53.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:53.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:53.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:53.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:53.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:53.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:53.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:53.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.773][private$selectFields]
biodb.TRACE[2024-06-15 16:23:53.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:23:53.777][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:23:53.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.799][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:23:53.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.806][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:23:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:53.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:53.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:53.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-06-15 16:23:53.824][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:23:53.825][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:23:53.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:53.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:53.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:53.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:53.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:53.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:53.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:53.845][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:23:53.848][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:53.850][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:53.852][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:23:54.221][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:23:54.588][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:54.592][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2024-06-15 16:23:54.599][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2024-06-15 16:23:54.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:54.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:54.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:54.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:54.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:54.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:54.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:54.625][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2024-06-15 16:23:54.626][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:54.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2024-06-15 16:23:54.630][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:54.631][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:54.633][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:54.634][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:54.635][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:54.637][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:54.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:54.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:54.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:54.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:54.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:54.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:54.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:54.661][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2024-06-15 16:23:54.666][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:54.668][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:54.670][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2024-06-15 16:23:55.032][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2024-06-15 16:23:55.483][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:55.487][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2024-06-15 16:23:55.516][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2024-06-15 16:23:55.539][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2024-06-15 16:23:55.560][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:55.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:55.564][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:55.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:55.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:55.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:55.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:55.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:55.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:55.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:55.583][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:55.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:55.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:55.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:55.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.596][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:55.599][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:55.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.605][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:55.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.613][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:55.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:55.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.619][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:55.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:55.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:55.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:55.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:55.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:55.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.646][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:55.648][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:55.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.651][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:55.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:55.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.662][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:55.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:55.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.670][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:55.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:55.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.678][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:55.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:55.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.692][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:55.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:55.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.703][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:55.705][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:55.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:55.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.720][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:55.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:55.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.726][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:55.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:55.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:55.739][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:55.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:55.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:55.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:55.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:55.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:55.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:55.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:55.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:55.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:55.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:55.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:55.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:55.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:55.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:55.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:55.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:55.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:55.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:55.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:55.815][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2024-06-15 16:23:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:55.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:55.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:55.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:55.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:55.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:55.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:55.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:55.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:55.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:55.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:55.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:55.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:55.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:55.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:55.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:55.855][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2024-06-15 16:23:55.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:55.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2024-06-15 16:23:55.863][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:55.865][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:55.868][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:55.870][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:55.872][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:55.874][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:55.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:55.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:55.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:55.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:55.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:55.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:55.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:55.894][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2024-06-15 16:23:55.897][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:55.898][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:55.900][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2024-06-15 16:23:56.312][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2024-06-15 16:23:56.727][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:56.732][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2024-06-15 16:23:57.199][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2024-06-15 16:23:57.205][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2024-06-15 16:23:57.209][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:57.212][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:57.214][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:57.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:57.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:57.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:57.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:57.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:57.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:57.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:57.240][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:57.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:57.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:57.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:57.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.265][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:57.267][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:57.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.271][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:57.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.278][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:57.279][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:57.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:57.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:57.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.291][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:57.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:57.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.297][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:57.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:57.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:57.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:57.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:57.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:57.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.322][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:57.324][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:57.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.330][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:57.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:57.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.337][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:57.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:57.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:57.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:57.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.359][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:57.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:57.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.364][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:57.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.374][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:57.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:57.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:57.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:57.390][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:57.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:57.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:57.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:57.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:57.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:57.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:57.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:57.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:57.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:57.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:57.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:57.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:57.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:57.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:57.475][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2024-06-15 16:23:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:57.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:57.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:57.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:57.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:57.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:57.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:57.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:57.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:57.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:57.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:57.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:57.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:57.519][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2024-06-15 16:23:57.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:57.524][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2024-06-15 16:23:57.526][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:57.528][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:57.530][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:57.532][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:57.534][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:57.536][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:57.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:57.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:57.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:57.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:57.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:57.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:57.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:57.569][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2024-06-15 16:23:57.574][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:57.575][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:57.578][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2024-06-15 16:23:57.939][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2024-06-15 16:23:58.300][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:58.304][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2024-06-15 16:23:58.397][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2024-06-15 16:23:58.403][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2024-06-15 16:23:58.407][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:58.410][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:58.412][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:58.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:58.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:58.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:58.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:58.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:58.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:58.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:58.441][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:58.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:58.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.447][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:58.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.458][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:58.460][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:58.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:58.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.474][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:58.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:58.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:58.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:58.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:58.492][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:58.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:58.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:58.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:58.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.511][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:58.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:58.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.522][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:58.524][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:58.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.530][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:58.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:58.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.538][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:58.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:58.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:58.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.551][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:58.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:58.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.562][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:58.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:58.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:58.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.578][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:58.580][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:58.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.583][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.586][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:58.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:58.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:58.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.599][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:58.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:58.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:58.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:58.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:58.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:58.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:58.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:58.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:58.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:58.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:58.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:58.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:58.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:58.683][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2024-06-15 16:23:58.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:58.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:58.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:58.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:58.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:58.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:58.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:58.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:58.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:58.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:58.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:58.743][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2024-06-15 16:23:58.745][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:58.748][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2024-06-15 16:23:58.750][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:58.752][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:58.754][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:58.756][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:58.758][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:58.760][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:58.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:58.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:58.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:58.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:58.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:58.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:58.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:58.789][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2024-06-15 16:23:58.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:58.797][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:58.800][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2024-06-15 16:23:59.158][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2024-06-15 16:23:59.518][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:23:59.522][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2024-06-15 16:23:59.529][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2024-06-15 16:23:59.534][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2024-06-15 16:23:59.538][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:23:59.540][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:23:59.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:23:59.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:59.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:59.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:59.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:59.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:59.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:59.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:23:59.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:59.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:59.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:59.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:59.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.582][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:59.584][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:59.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.590][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:23:59.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:23:59.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.597][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:59.599][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:59.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:23:59.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:23:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:59.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:59.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.613][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:23:59.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:23:59.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:59.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:59.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:23:59.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:23:59.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:59.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:23:59.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.636][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:59.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:59.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:23:59.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:59.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:59.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:59.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:59.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:23:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.658][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:59.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:59.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:23:59.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:23:59.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.670][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:59.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:59.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.678][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:23:59.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:23:59.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.685][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:59.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:59.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:23:59.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:23:59.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:59.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:59.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:59.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:59.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:59.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:59.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:23:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:23:59.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:59.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:59.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:59.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:59.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:59.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:59.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:59.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:23:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:23:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:59.770][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2024-06-15 16:23:59.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:59.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:59.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:59.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:23:59.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:59.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:23:59.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:23:59.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:23:59.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:59.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:59.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:59.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:59.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:59.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:59.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:59.810][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2024-06-15 16:23:59.812][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:23:59.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2024-06-15 16:23:59.816][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:23:59.817][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:23:59.819][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:23:59.821][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:23:59.823][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:23:59.825][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:23:59.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:23:59.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:23:59.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:23:59.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:23:59.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:23:59.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:23:59.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:23:59.848][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2024-06-15 16:23:59.851][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:23:59.853][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:23:59.854][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2024-06-15 16:24:00.220][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2024-06-15 16:24:00.589][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:00.594][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2024-06-15 16:24:00.602][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2024-06-15 16:24:00.608][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2024-06-15 16:24:00.613][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:00.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:00.618][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:00.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:00.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:00.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:00.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:00.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:00.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:00.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:00.649][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:00.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:00.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.655][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:00.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:00.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.665][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:00.667][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:00.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:00.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:00.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.676][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:00.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:00.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.680][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:00.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:00.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:00.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:00.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:00.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:00.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:00.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:00.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.714][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:00.716][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:00.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.719][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.721][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:00.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:00.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.728][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:00.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:00.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.736][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:00.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:00.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:00.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:00.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:00.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:00.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.772][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:00.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:00.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:00.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:00.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.787][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:00.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:00.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:00.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:00.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.802][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:00.805][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:00.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:00.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:00.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:00.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:00.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:00.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:00.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:00.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:00.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:00.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:00.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:00.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:00.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:00.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:00.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:00.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:00.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:00.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:00.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:00.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:00.896][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2024-06-15 16:24:00.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:00.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:00.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:00.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:00.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:00.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:00.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:00.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:00.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:00.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:00.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:00.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:00.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:00.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:00.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:00.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:00.938][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2024-06-15 16:24:00.940][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:00.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2024-06-15 16:24:00.945][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:00.947][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:00.949][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:00.951][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:00.953][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:00.955][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:00.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:00.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:00.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:00.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:00.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:00.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:00.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:00.982][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2024-06-15 16:24:00.988][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:00.990][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:00.993][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2024-06-15 16:24:01.355][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2024-06-15 16:24:01.722][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:01.726][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2024-06-15 16:24:01.734][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2024-06-15 16:24:01.742][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2024-06-15 16:24:01.746][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:01.749][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:01.752][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:01.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:01.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:01.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:01.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:01.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:01.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:01.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:01.781][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:01.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:01.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:01.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:01.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.799][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:01.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:01.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:01.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:01.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.816][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:01.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:01.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:01.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:01.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:01.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:01.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:01.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:01.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:01.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:01.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:01.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.868][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:01.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:01.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.877][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:01.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:01.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.886][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:01.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:01.896][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:01.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:01.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.912][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:01.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:01.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.917][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:01.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.927][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:01.929][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:01.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:01.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:01.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:01.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:01.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:01.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:01.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:01.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:01.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:01.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:01.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:01.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:01.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:01.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:01.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:02.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:02.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:02.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:02.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:02.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:02.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:02.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:02.029][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2024-06-15 16:24:02.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:02.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:02.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:02.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:02.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:02.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:02.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:02.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:02.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:02.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:02.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:02.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:02.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:02.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:02.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:02.076][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2024-06-15 16:24:02.078][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:02.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2024-06-15 16:24:02.084][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:02.086][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:02.088][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:02.090][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:02.092][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:02.094][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:02.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:02.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:02.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:02.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:02.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:02.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:02.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:02.119][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2024-06-15 16:24:02.122][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:02.123][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:02.126][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2024-06-15 16:24:02.491][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2024-06-15 16:24:02.850][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:02.854][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2024-06-15 16:24:03.292][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2024-06-15 16:24:03.299][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2024-06-15 16:24:03.303][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:03.306][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:03.309][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:03.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:03.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:03.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:03.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:03.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:03.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:03.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:03.354][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:03.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:03.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:03.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:03.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.384][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:03.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:03.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:03.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:03.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.403][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:03.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:03.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.409][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:03.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:03.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.421][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:03.424][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:03.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:03.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:03.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:03.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:03.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:03.457][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:03.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.464][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:03.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:03.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.473][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:03.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:03.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.483][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:03.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:03.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:03.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:03.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:03.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.509][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:03.511][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:03.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.527][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:03.530][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:03.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:03.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:03.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.546][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:03.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:03.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:03.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:03.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:03.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:03.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:03.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:03.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:03.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:03.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:03.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:03.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:03.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:03.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:03.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:03.649][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2024-06-15 16:24:03.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:03.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:03.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:03.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:03.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:03.676][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:03.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:03.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:03.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:03.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:03.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:03.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:03.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:03.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.724][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.726][private$selectFields]
biodb.TRACE[2024-06-15 16:24:03.728][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:03.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:03.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.734][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.754][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.764][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:03.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.793][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-06-15 16:24:03.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:03.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:03.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:03.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:03.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:03.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:03.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.840][private$selectFields]
biodb.TRACE[2024-06-15 16:24:03.842][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:03.844][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:03.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.867][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.878][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-06-15 16:24:03.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:03.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:03.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:03.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:03.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:03.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:03.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:03.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.946][private$selectFields]
biodb.TRACE[2024-06-15 16:24:03.948][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:03.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:03.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.968][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:03.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.977][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:03.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:03.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:03.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:03.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:04.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-06-15 16:24:04.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:04.004][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:04.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:04.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:04.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:04.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:04.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:04.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:04.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:04.030][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:04.035][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:04.037][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:04.040][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:24:04.406][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:24:04.777][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:04.784][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2024-06-15 16:24:04.792][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2024-06-15 16:24:04.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:04.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:04.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:04.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:04.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:04.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:04.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:04.820][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2024-06-15 16:24:04.821][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:04.824][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2024-06-15 16:24:04.827][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:04.829][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:04.831][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:04.832][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:04.834][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:04.836][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:04.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:04.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:04.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:04.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:04.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:04.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:04.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:04.861][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2024-06-15 16:24:04.866][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:04.868][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:04.870][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2024-06-15 16:24:05.226][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2024-06-15 16:24:05.588][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:05.592][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2024-06-15 16:24:05.598][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2024-06-15 16:24:05.604][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2024-06-15 16:24:05.608][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:05.611][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:05.613][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:05.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:05.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:05.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:05.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:05.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:05.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:05.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:05.632][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:05.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:05.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:05.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.646][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:05.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:05.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:05.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.664][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:05.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:05.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:05.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:05.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:05.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:05.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:05.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:05.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:05.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:05.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:05.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.709][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:05.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:05.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.717][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:05.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:05.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:05.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:05.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:05.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:05.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:05.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.740][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:05.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:05.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:05.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:05.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.753][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:05.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:05.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:05.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:05.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.768][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:05.769][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:05.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:05.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:05.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:05.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:05.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:05.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:05.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:05.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:05.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:05.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:05.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:05.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:05.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:05.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:05.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:05.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:05.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:05.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:05.841][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2024-06-15 16:24:05.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:05.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:05.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:05.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:05.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:05.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:05.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:05.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:05.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:05.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:05.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:05.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:05.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:05.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:05.883][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2024-06-15 16:24:05.884][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:05.886][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2024-06-15 16:24:05.888][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:05.889][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:05.890][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:05.892][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:05.893][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:05.894][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:05.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:05.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:05.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:05.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:05.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:05.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:05.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:05.912][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2024-06-15 16:24:05.916][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:05.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:05.919][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2024-06-15 16:24:06.277][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2024-06-15 16:24:06.637][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:06.642][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2024-06-15 16:24:06.649][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2024-06-15 16:24:06.656][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2024-06-15 16:24:06.660][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:06.663][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:06.666][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:06.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:06.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:06.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:06.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:06.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:06.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:06.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:06.694][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:06.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:06.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:06.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:06.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.710][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:06.712][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:06.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.716][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.718][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.726][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:06.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:06.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.732][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:06.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:06.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:06.744][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:06.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.747][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:06.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:06.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.757][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:06.759][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:06.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:06.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:06.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:06.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:06.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.779][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:06.781][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:06.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:06.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.795][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:06.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:06.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:06.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:06.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.824][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:06.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:06.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:06.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:06.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.845][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:06.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:06.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.851][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:06.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:06.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.862][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:06.864][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:06.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:06.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:06.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:06.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:06.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:06.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:06.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:06.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:06.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:06.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:06.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:06.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:06.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:06.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:06.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:06.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:06.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:06.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:06.948][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2024-06-15 16:24:06.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:06.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:06.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:06.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:06.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:06.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:06.972][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:06.977][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:06.978][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:06.981][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:24:07.341][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:24:07.697][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:07.701][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2024-06-15 16:24:07.708][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2024-06-15 16:24:07.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:07.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:07.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:07.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:07.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:07.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:07.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:07.736][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2024-06-15 16:24:07.737][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:07.740][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2024-06-15 16:24:07.743][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:07.745][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:07.747][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:07.749][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:07.751][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:07.752][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:07.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:07.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:07.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:07.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:07.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:07.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:07.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:07.777][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2024-06-15 16:24:07.782][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:07.784][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:07.786][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2024-06-15 16:24:08.143][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2024-06-15 16:24:08.502][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:08.506][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2024-06-15 16:24:08.513][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2024-06-15 16:24:08.518][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2024-06-15 16:24:08.523][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:08.526][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:08.528][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:08.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:08.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:08.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:08.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:08.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:08.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:08.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:08.554][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:08.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:08.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.559][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:08.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:08.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.569][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:08.570][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:08.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.574][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:08.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:08.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.583][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:08.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:08.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:08.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:08.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:08.602][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:08.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:08.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:08.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:08.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:08.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:08.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:08.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:08.636][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:08.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.642][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:08.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:08.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.650][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:08.653][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:08.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.659][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:08.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:08.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:08.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:08.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:08.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.684][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:08.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:08.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:08.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:08.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.701][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:08.703][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:08.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:08.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:08.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:08.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:08.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.724][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:08.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:08.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:08.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:08.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:08.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:08.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:08.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:08.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:08.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:08.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:08.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:08.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:08.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:08.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:08.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:08.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:08.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:08.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:08.820][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2024-06-15 16:24:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:08.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:08.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:08.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:08.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:08.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:08.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:08.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:08.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:08.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:08.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:08.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:08.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:08.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:08.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:08.874][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2024-06-15 16:24:08.876][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:08.880][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2024-06-15 16:24:08.882][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:08.885][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:08.887][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:08.890][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:08.892][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:08.894][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:08.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:08.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:08.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:08.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:08.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:08.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:08.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:08.941][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2024-06-15 16:24:08.947][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:08.949][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:08.952][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2024-06-15 16:24:09.308][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2024-06-15 16:24:09.665][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:09.669][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2024-06-15 16:24:09.675][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2024-06-15 16:24:09.681][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2024-06-15 16:24:09.685][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:09.687][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:09.689][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:09.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:09.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:09.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:09.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:09.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:09.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:09.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:09.716][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:09.718][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:09.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:09.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:09.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.730][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:09.732][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:09.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:09.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:09.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.746][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:09.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:09.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:09.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:09.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:09.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:09.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:09.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:09.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:09.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:09.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.778][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:09.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:09.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.782][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.784][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:09.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:09.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.789][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:09.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:09.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.794][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:09.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:09.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:09.801][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:09.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:09.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:09.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.811][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:09.813][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:09.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.816][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:09.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.826][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:09.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:09.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.831][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.833][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:09.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.841][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:09.844][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:09.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:09.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:09.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:09.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:09.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:09.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:09.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:09.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:09.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:09.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:09.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:09.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:09.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:09.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:09.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:09.947][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2024-06-15 16:24:09.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:09.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:09.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:09.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:09.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:09.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:09.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:09.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:09.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:09.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:09.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:09.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:10.001][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2024-06-15 16:24:10.003][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:10.007][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2024-06-15 16:24:10.010][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:10.012][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:10.015][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:10.016][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:10.017][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:10.019][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:10.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:10.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:10.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:10.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:10.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:10.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:10.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:10.036][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2024-06-15 16:24:10.040][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:10.041][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:10.043][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2024-06-15 16:24:10.407][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2024-06-15 16:24:10.761][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:10.765][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2024-06-15 16:24:10.786][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2024-06-15 16:24:10.792][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2024-06-15 16:24:10.795][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:10.798][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:10.800][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:10.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:10.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:10.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:10.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:10.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:10.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:10.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:10.827][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:10.829][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:10.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:10.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:10.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.842][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:10.843][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:10.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.847][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:10.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:10.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.854][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:10.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:10.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:10.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:10.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.872][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:10.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:10.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.879][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:10.880][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:10.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:10.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:10.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.892][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:10.894][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:10.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.900][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:10.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:10.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.909][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:10.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:10.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.917][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:10.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:10.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:10.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:10.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.934][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:10.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:10.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:10.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:10.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.951][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:10.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:10.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:10.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:10.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:10.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:10.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:10.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:10.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:10.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:10.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:10.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:10.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:10.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:11.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:11.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:11.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:11.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:11.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:11.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:11.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:11.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:11.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:11.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:11.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:11.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:11.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:11.087][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2024-06-15 16:24:11.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:11.113][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:11.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.159][private$selectFields]
biodb.TRACE[2024-06-15 16:24:11.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:11.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:11.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.184][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.194][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:11.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.220][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-06-15 16:24:11.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.268][private$selectFields]
biodb.TRACE[2024-06-15 16:24:11.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:11.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:11.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.294][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.304][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-06-15 16:24:11.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.371][private$selectFields]
biodb.TRACE[2024-06-15 16:24:11.373][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:11.375][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:11.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.392][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.396][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.405][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-06-15 16:24:11.432][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:11.434][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:11.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:11.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:11.512][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:11.515][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-15 16:24:11.519][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:11.523][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-15 16:24:11.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:11.582][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:11.588][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:11.591][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-15 16:24:11.594][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:11.598][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-15 16:24:11.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:11.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:11.689][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:11.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.735][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.736][private$selectFields]
biodb.TRACE[2024-06-15 16:24:11.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:11.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:11.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.753][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.760][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:11.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-15 16:24:11.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.807][private$selectFields]
biodb.TRACE[2024-06-15 16:24:11.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:11.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:11.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.821][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.823][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.828][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.829][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:11.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:24:11.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.877][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.879][private$selectFields]
biodb.TRACE[2024-06-15 16:24:11.880][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:11.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:11.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.896][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:11.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.902][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:11.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-15 16:24:11.921][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:11.922][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:11.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:11.945][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:11.949][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:11.951][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-06-15 16:24:11.952][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:11.955][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-06-15 16:24:11.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:11.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:11.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:11.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:11.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:11.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:11.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:11.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:11.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:11.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:11.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.041][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:12.046][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:12.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-06-15 16:24:12.051][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:12.054][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-06-15 16:24:12.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.194][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:12.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.241][private$selectFields]
biodb.TRACE[2024-06-15 16:24:12.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:12.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:12.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.267][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.277][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:12.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-06-15 16:24:12.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.356][private$selectFields]
biodb.TRACE[2024-06-15 16:24:12.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:12.360][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:12.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.375][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.379][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.387][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-06-15 16:24:12.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.450][private$selectFields]
biodb.TRACE[2024-06-15 16:24:12.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:12.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:12.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.471][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.473][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:12.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.482][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:12.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:12.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.505][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-06-15 16:24:12.507][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:12.509][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:12.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:12.537][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:12.542][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:12.544][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-06-15 16:24:12.547][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:12.550][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-06-15 16:24:12.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.931][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:12.937][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:12.940][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-06-15 16:24:12.942][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:12.946][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-06-15 16:24:12.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:12.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:12.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:12.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:12.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:12.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:12.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:12.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:12.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:12.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:12.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:12.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:13.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:13.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:13.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:13.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:13.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:13.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:13.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:13.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:13.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:13.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:13.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:13.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:13.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:13.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:13.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:13.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:13.117][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:13.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:13.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:13.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:13.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:13.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:13.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:13.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:13.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.159][private$selectFields]
biodb.TRACE[2024-06-15 16:24:13.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:13.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:13.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.170][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.181][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.190][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.215][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-06-15 16:24:13.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:13.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:13.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:13.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:13.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:13.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:13.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:13.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.258][private$selectFields]
biodb.TRACE[2024-06-15 16:24:13.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:13.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:13.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.271][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.283][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.293][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:13.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-06-15 16:24:13.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:13.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:13.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:13.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:13.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:13.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:13.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:13.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.357][private$selectFields]
biodb.TRACE[2024-06-15 16:24:13.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:13.360][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:13.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.378][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.379][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.381][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:13.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.389][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.391][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:13.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:13.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:13.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:13.417][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-06-15 16:24:13.419][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:13.421][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:13.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:13.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:13.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:13.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:13.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:13.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:13.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:13.498][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:13.504][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:13.506][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:13.509][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:24:13.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:24:14.230][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:14.235][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2024-06-15 16:24:14.243][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2024-06-15 16:24:14.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:14.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:14.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:14.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:14.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:14.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:14.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:14.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:14.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:14.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:14.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:14.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:14.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:14.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:14.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:14.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:14.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:14.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:14.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:14.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:14.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:14.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:14.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:14.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:14.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:14.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:14.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:14.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:14.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:14.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:14.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:14.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:14.370][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2024-06-15 16:24:14.372][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:14.375][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2024-06-15 16:24:14.378][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:14.380][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:14.382][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:14.384][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:14.386][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:14.388][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:14.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:14.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:14.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:14.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:14.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:14.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:14.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:14.415][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2024-06-15 16:24:14.420][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:14.422][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:14.425][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2024-06-15 16:24:14.786][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2024-06-15 16:24:15.151][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:15.155][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2024-06-15 16:24:15.178][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2024-06-15 16:24:15.186][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2024-06-15 16:24:15.190][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:15.193][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:15.196][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:15.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:15.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:15.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:15.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:15.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:15.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:15.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:15.225][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:15.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:15.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.240][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:15.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:15.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.252][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:15.255][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:15.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:15.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:15.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.271][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:15.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:15.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:15.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:15.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:15.292][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:15.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:15.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:15.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:15.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:15.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:15.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:15.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.321][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:15.323][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:15.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.326][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.329][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:15.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:15.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.336][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:15.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.341][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:15.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:15.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:15.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.365][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:15.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:15.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:15.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.380][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:15.382][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:15.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.385][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:15.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:15.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:15.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:15.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:15.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:15.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:15.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:15.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:15.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:15.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:15.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:15.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:15.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:15.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:15.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:15.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:15.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:15.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:15.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:15.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:15.484][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2024-06-15 16:24:15.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:15.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:15.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:15.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:15.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:15.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:15.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:15.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:15.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:15.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:15.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:15.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:15.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:15.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:15.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:15.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:15.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:15.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:15.572][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2024-06-15 16:24:15.574][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:15.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2024-06-15 16:24:15.735][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:15.738][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:15.741][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:15.743][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:15.745][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:15.748][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:15.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:15.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:15.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:15.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:15.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:15.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:15.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:15.781][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2024-06-15 16:24:15.787][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:15.789][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:15.792][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2024-06-15 16:24:16.153][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2024-06-15 16:24:16.515][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:16.518][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2024-06-15 16:24:16.526][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2024-06-15 16:24:16.531][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2024-06-15 16:24:16.535][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:16.538][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:16.540][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:16.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:16.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:16.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:16.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:16.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:16.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:16.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:16.570][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:16.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:16.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.576][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:16.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.586][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:16.588][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:16.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:16.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:16.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:16.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:16.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:16.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:16.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:16.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:16.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.649][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:16.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:16.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.655][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.657][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:16.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:16.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.665][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:16.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:16.675][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:16.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:16.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:16.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.689][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:16.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:16.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:16.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:16.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.705][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:16.707][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:16.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:16.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:16.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.721][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:16.724][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:16.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.728][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:16.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:16.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:16.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:16.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:16.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:16.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:16.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:16.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:16.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:16.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:16.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:16.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:16.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:16.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:16.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:16.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:16.845][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2024-06-15 16:24:16.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:16.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:16.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:16.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:16.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:16.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:16.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:16.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:16.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:16.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:16.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:16.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:16.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:16.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:16.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:16.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:16.896][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2024-06-15 16:24:16.898][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:16.902][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2024-06-15 16:24:16.904][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:16.907][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:16.909][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:16.911][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:16.913][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:16.915][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:16.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:16.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:16.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:16.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:16.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:16.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:16.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:16.945][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2024-06-15 16:24:16.950][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:16.952][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:16.955][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2024-06-15 16:24:17.317][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2024-06-15 16:24:17.677][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:17.682][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2024-06-15 16:24:17.690][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2024-06-15 16:24:17.696][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2024-06-15 16:24:17.700][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:17.703][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:17.706][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:17.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:17.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:17.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:17.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:17.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:17.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:17.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:17.735][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:17.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:17.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.740][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:17.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:17.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.749][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:17.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:17.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.755][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:17.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:17.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.764][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:17.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:17.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:17.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:17.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:17.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:17.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.785][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:17.790][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:17.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.795][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:17.797][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:17.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.804][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:17.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:17.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:17.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:17.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:17.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:17.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.828][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:17.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.841][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:17.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:17.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:17.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.859][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:17.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:17.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:17.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:17.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:17.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:17.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:17.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:17.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:17.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:17.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:17.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:17.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:17.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:17.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:17.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:17.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:17.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:17.982][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2024-06-15 16:24:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:17.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:17.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:17.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:17.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:17.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:18.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:18.009][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:18.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:18.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:18.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:18.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:18.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:18.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:18.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.055][private$selectFields]
biodb.TRACE[2024-06-15 16:24:18.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:18.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:18.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.081][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.092][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:24:18.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:18.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:18.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:18.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:18.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:18.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:18.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:18.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.165][private$selectFields]
biodb.TRACE[2024-06-15 16:24:18.167][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:18.169][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:18.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.193][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.219][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-06-15 16:24:18.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:18.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:18.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:18.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:18.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:18.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:18.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:18.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.300][private$selectFields]
biodb.TRACE[2024-06-15 16:24:18.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:18.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:18.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.315][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.329][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:18.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.341][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:18.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:18.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:18.370][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-06-15 16:24:18.372][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:18.374][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:18.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:18.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:18.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:18.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:18.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:18.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:18.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:18.406][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:18.412][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:18.414][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:18.418][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:24:18.784][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:24:19.227][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:19.233][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2024-06-15 16:24:19.241][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2024-06-15 16:24:19.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:19.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:19.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:19.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:19.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:19.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:19.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:19.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:19.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:19.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:19.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:19.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:19.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:19.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:19.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:19.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:19.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:19.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:19.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:19.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:19.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:19.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:19.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:19.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:19.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:19.362][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:19.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:19.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:19.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:19.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:19.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:19.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:19.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:19.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.391][private$selectFields]
biodb.TRACE[2024-06-15 16:24:19.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:19.394][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:19.395][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.402][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.407][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.417][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.441][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-06-15 16:24:19.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:19.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:19.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:19.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:19.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:19.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:19.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:19.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.478][private$selectFields]
biodb.TRACE[2024-06-15 16:24:19.480][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:19.482][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:19.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.485][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.490][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.497][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.500][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.509][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:19.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.534][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-06-15 16:24:19.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:19.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:19.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:19.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:19.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:19.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:19.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:19.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.573][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.575][private$selectFields]
biodb.TRACE[2024-06-15 16:24:19.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:19.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:19.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:19.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:19.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:19.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:19.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-06-15 16:24:19.634][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:19.636][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:19.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:19.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:19.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:19.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:19.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:19.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:19.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:19.681][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:19.688][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:19.690][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:19.694][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:24:20.059][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:24:20.423][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:20.428][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2024-06-15 16:24:20.436][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2024-06-15 16:24:20.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:20.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:20.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:20.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:20.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:20.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:20.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:20.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:20.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:20.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:20.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:20.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:20.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:20.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:20.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:20.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:20.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:20.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:20.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:20.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:20.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:20.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:20.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:20.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:20.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:20.515][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2024-06-15 16:24:20.517][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:20.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2024-06-15 16:24:20.523][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:20.526][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:20.528][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:20.530][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:20.532][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:20.534][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:20.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:20.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:20.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:20.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:20.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:20.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:20.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:20.562][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2024-06-15 16:24:20.566][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:20.569][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:20.571][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2024-06-15 16:24:20.933][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2024-06-15 16:24:21.296][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:21.300][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2024-06-15 16:24:21.307][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2024-06-15 16:24:21.348][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2024-06-15 16:24:21.352][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:21.354][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:21.357][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:21.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:21.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:21.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:21.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:21.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:21.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:21.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:21.384][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:21.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:21.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.390][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:21.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.400][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:21.402][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:21.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:21.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:21.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.415][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:21.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:21.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:21.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:21.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.431][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:21.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:21.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:21.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:21.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:21.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:21.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:21.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:21.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.471][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:21.473][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:21.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.480][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:21.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:21.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.489][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:21.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:21.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.495][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:21.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:21.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.504][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:21.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:21.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:21.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.519][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:21.521][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:21.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.525][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.527][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:21.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:21.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:21.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:21.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:21.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:21.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:21.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:21.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:21.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:21.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:21.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:21.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:21.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:21.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:21.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:21.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:21.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:21.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:21.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:21.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:21.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:21.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:21.626][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2024-06-15 16:24:21.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:21.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:21.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:21.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:21.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:21.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:21.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:21.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:21.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:21.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:21.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:21.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:21.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:21.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:21.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:21.676][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2024-06-15 16:24:21.678][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:21.681][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2024-06-15 16:24:21.684][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:21.686][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:21.688][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:21.691][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:21.693][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:21.695][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:21.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:21.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:21.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:21.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:21.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:21.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:21.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:21.724][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2024-06-15 16:24:21.730][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:21.733][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:21.736][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2024-06-15 16:24:22.136][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2024-06-15 16:24:22.500][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:22.504][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2024-06-15 16:24:22.511][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2024-06-15 16:24:22.517][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2024-06-15 16:24:22.529][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:22.532][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:22.535][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:22.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:22.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:22.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:22.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:22.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:22.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:22.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:22.566][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:22.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:22.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:22.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:22.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.584][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:22.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:22.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.593][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:22.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:22.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.601][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:22.604][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:22.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:22.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:22.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:22.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.643][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:22.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:22.658][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:22.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:22.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:22.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:22.675][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:22.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.681][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:22.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:22.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.689][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:22.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:22.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:22.700][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:22.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:22.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:22.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.716][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:22.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:22.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.723][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:22.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:22.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.735][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:22.737][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:22.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:22.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:22.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:22.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:22.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:22.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:22.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:22.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:22.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:22.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:22.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:22.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:22.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:22.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:22.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:22.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:22.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:22.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:22.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:22.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:22.849][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2024-06-15 16:24:22.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:22.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:22.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:22.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:22.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:22.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:22.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:22.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:22.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:22.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:22.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:22.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:22.904][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2024-06-15 16:24:22.906][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:22.909][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2024-06-15 16:24:22.912][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:22.914][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:22.916][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:22.918][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:22.920][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:22.922][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:22.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:22.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:22.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:22.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:22.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:22.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:22.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:22.950][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2024-06-15 16:24:22.955][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:22.957][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:22.961][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2024-06-15 16:24:23.537][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2024-06-15 16:24:23.897][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:23.901][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2024-06-15 16:24:23.909][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2024-06-15 16:24:23.915][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2024-06-15 16:24:23.919][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:23.922][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:23.925][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:23.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:23.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:23.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:23.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:23.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:23.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:23.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:23.955][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:23.957][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:23.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:23.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:23.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:23.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:23.972][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:23.974][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:23.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:23.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:23.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:23.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:23.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:23.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:23.988][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:23.990][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:23.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:23.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:23.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:23.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:24.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:24.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:24.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:24.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:24.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:24.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.024][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:24.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:24.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.034][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:24.036][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:24.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.042][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:24.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:24.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.057][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:24.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:24.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.063][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:24.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:24.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.075][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:24.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:24.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.081][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:24.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:24.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:24.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:24.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:24.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.108][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:24.110][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:24.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:24.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:24.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:24.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:24.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:24.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:24.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:24.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:24.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:24.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:24.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:24.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:24.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:24.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:24.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:24.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:24.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:24.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:24.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:24.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:24.206][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2024-06-15 16:24:24.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:24.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:24.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:24.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:24.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:24.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:24.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:24.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:24.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:24.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:24.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:24.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:24.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:24.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:24.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:24.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:24.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:24.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:24.321][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2024-06-15 16:24:24.323][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:24.327][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2024-06-15 16:24:24.330][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:24.332][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:24.335][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:24.337][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:24.339][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:24.341][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:24.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:24.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:24.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:24.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:24.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:24.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:24.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:24.372][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2024-06-15 16:24:24.378][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:24.380][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:24.383][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2024-06-15 16:24:24.751][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2024-06-15 16:24:25.116][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:25.121][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2024-06-15 16:24:25.127][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2024-06-15 16:24:25.133][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2024-06-15 16:24:25.137][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:25.140][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:25.143][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:25.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:25.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:25.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:25.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:25.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:25.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:25.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:25.176][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:25.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:25.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:25.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:25.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.193][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:25.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:25.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.199][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:25.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:25.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.211][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:25.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:25.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:25.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:25.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:25.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:25.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:25.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.243][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:25.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:25.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:25.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:25.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:25.261][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:25.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.267][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:25.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.275][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:25.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:25.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.280][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:25.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:25.292][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:25.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:25.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:25.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.305][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:25.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:25.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:25.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.324][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:25.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:25.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:25.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.342][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:25.344][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:25.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.348][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:25.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:25.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:25.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:25.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:25.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:25.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:25.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:25.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:25.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:25.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:25.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:25.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:25.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:25.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:25.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:25.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:25.434][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2024-06-15 16:24:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:25.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:25.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:25.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:25.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:25.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:25.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:25.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:25.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:25.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:25.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:25.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:25.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:25.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:25.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:25.487][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2024-06-15 16:24:25.489][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:25.492][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2024-06-15 16:24:25.495][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:25.497][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:25.499][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:25.501][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:25.503][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:25.505][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:25.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:25.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:25.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:25.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:25.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:25.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:25.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:25.535][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2024-06-15 16:24:25.540][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:25.542][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:25.545][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2024-06-15 16:24:25.910][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2024-06-15 16:24:26.283][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:26.287][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2024-06-15 16:24:26.295][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2024-06-15 16:24:26.301][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2024-06-15 16:24:26.304][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:26.307][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:26.309][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:26.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:26.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:26.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:26.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:26.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:26.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:26.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:26.336][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:26.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:26.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:26.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.352][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:26.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:26.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:26.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.368][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:26.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:26.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.375][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:26.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.385][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:26.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:26.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.390][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:26.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:26.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:26.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.415][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:26.417][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:26.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.423][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:26.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:26.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.431][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:26.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:26.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.439][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:26.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:26.459][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:26.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:26.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.481][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:26.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:26.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:26.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.499][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:26.501][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:26.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:26.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:26.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:26.518][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:26.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.522][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:26.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:26.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:26.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:26.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:26.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:26.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:26.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:26.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:26.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:26.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:26.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:26.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:26.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:26.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:26.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:26.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:26.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:26.612][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2024-06-15 16:24:26.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:26.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:26.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:26.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:26.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:26.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:26.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:26.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:26.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:26.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:26.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:26.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:26.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:26.665][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2024-06-15 16:24:26.667][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:26.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2024-06-15 16:24:26.673][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:26.675][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:26.677][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:26.679][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:26.681][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:26.683][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:26.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:26.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:26.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:26.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:26.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:26.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:26.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:26.710][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2024-06-15 16:24:26.715][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:26.717][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:26.720][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2024-06-15 16:24:27.082][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2024-06-15 16:24:27.441][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:27.446][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2024-06-15 16:24:27.453][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2024-06-15 16:24:27.459][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2024-06-15 16:24:27.463][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:27.466][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:27.468][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:27.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:27.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:27.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:27.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:27.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:27.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:27.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:27.500][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:27.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:27.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.506][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:27.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.517][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:27.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:27.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:27.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.536][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:27.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:27.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:27.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:27.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:27.556][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:27.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:27.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:27.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.576][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:27.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:27.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.586][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:27.588][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:27.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.591][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.594][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:27.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:27.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.599][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:27.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:27.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:27.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:27.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:27.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:27.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.624][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:27.626][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:27.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.629][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:27.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:27.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.639][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:27.641][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:27.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:27.656][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:27.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:27.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:27.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:27.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:27.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:27.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:27.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:27.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:27.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:27.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:27.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:27.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:27.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:27.748][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2024-06-15 16:24:27.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:27.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:27.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:27.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:27.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:27.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:27.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:27.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:27.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:27.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:27.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:27.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:27.801][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2024-06-15 16:24:27.803][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:27.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2024-06-15 16:24:27.817][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:27.819][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:27.821][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:27.823][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:27.825][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:27.827][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:27.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:27.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:27.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:27.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:27.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:27.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:27.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:27.859][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2024-06-15 16:24:27.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:27.868][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:27.871][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2024-06-15 16:24:28.235][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2024-06-15 16:24:28.598][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:28.602][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2024-06-15 16:24:28.609][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2024-06-15 16:24:28.632][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2024-06-15 16:24:28.637][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:28.640][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:28.643][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:28.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:28.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:28.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:28.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:28.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:28.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:28.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:28.678][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:28.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:28.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:28.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:28.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.695][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:28.697][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:28.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:28.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:28.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.712][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:28.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:28.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:28.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:28.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.728][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:28.730][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:28.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:28.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:28.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:28.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.761][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:28.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:28.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.769][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:28.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:28.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:28.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:28.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:28.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:28.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:28.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.801][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:28.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:28.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.807][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:28.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:28.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.817][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:28.819][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:28.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.823][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:28.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:28.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:28.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:28.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:28.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:28.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:28.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:28.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:28.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:28.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:28.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:28.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:28.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:28.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:28.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:28.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:28.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:28.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:28.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:28.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:28.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:28.902][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2024-06-15 16:24:28.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:28.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:28.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:28.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:28.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:28.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:28.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:28.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:28.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:28.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:28.935][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2024-06-15 16:24:28.937][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:28.939][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2024-06-15 16:24:28.940][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:28.942][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:28.943][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:28.945][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:28.946][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:28.947][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:28.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:28.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:28.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:28.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:28.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:28.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:28.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:28.966][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2024-06-15 16:24:28.969][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:28.970][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:28.972][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2024-06-15 16:24:29.615][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2024-06-15 16:24:30.204][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:30.207][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2024-06-15 16:24:30.248][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2024-06-15 16:24:30.300][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2024-06-15 16:24:30.380][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:30.382][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:30.384][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:30.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:30.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:30.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:30.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:30.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:30.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:30.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:30.402][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:30.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:30.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:30.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.412][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:30.413][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:30.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.417][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:30.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.422][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:30.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:30.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:30.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:30.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:30.434][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:30.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:30.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:30.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:30.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.447][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:30.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:30.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.458][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:30.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:30.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.464][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:30.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:30.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:30.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:30.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.479][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:30.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:30.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.483][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:30.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:30.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.489][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:30.491][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:30.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.494][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:30.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:30.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:30.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:30.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:30.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:30.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:30.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:30.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:30.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:30.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:30.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:30.570][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2024-06-15 16:24:30.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:30.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:30.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:30.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:30.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:30.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:30.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:30.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:30.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:30.600][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2024-06-15 16:24:30.602][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:30.604][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2024-06-15 16:24:30.605][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:30.607][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:30.608][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:30.609][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:30.611][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:30.612][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:30.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:30.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:30.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:30.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:30.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:30.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:30.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:30.629][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2024-06-15 16:24:30.632][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:30.633][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:30.635][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2024-06-15 16:24:31.923][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2024-06-15 16:24:32.564][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:32.568][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2024-06-15 16:24:32.597][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2024-06-15 16:24:32.633][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2024-06-15 16:24:32.658][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:32.660][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:32.663][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:32.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:32.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:32.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:32.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:32.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:32.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:32.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:32.685][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:32.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:32.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.698][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:32.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:32.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.710][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:32.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:32.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.714][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:32.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.721][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:32.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:32.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:32.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:32.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:32.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.739][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:32.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:32.751][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:32.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.754][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.756][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:32.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:32.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.764][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:32.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:32.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:32.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:32.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.774][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.783][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:32.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:32.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.798][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:32.799][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:32.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.809][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:32.811][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:32.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.814][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:32.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:32.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:32.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:32.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:32.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:32.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:32.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:32.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:32.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:32.891][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2024-06-15 16:24:32.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:32.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:32.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:32.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:32.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:32.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:32.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:32.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:32.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:32.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:32.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:32.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:32.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:32.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:32.927][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2024-06-15 16:24:32.928][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:32.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2024-06-15 16:24:32.933][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:32.934][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:32.936][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:32.937][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:32.938][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:32.940][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:32.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:32.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:32.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:32.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:32.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:32.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:32.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:32.965][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2024-06-15 16:24:32.970][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:32.971][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:32.973][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2024-06-15 16:24:33.493][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2024-06-15 16:24:34.044][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:34.047][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2024-06-15 16:24:34.074][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2024-06-15 16:24:34.101][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2024-06-15 16:24:34.132][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:34.135][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:34.138][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:34.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:34.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:34.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:34.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:34.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:34.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:34.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:34.168][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:34.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:34.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:34.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.186][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:34.188][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:34.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:34.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:34.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.203][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:34.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:34.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.210][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:34.223][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:34.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.227][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:34.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:34.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:34.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:34.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:34.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:34.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.284][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:34.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:34.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.294][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:34.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:34.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:34.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:34.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:34.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.318][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:34.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:34.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.324][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:34.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:34.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.332][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:34.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:34.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.339][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:34.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:34.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:34.346][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:34.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:34.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:34.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:34.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:34.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:34.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:34.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:34.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:34.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:34.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:34.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:34.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:34.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:34.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:34.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:34.417][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2024-06-15 16:24:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:34.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:34.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:34.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:34.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:34.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:34.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:34.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:34.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:34.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:34.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:34.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:34.461][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2024-06-15 16:24:34.463][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:34.466][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2024-06-15 16:24:34.468][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:34.470][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:34.472][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:34.474][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:34.476][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:34.478][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:34.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:34.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:34.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:34.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:34.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:34.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:34.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:34.497][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2024-06-15 16:24:34.500][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:34.502][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:34.503][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2024-06-15 16:24:35.060][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2024-06-15 16:24:35.434][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:35.438][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2024-06-15 16:24:35.445][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2024-06-15 16:24:35.451][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2024-06-15 16:24:35.454][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:35.457][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:35.459][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:35.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:35.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:35.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:35.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:35.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:35.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:35.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:35.487][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:35.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:35.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:35.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:35.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.503][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:35.506][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:35.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:35.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:35.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.522][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:35.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:35.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:35.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:35.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:35.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.547][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:35.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:35.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:35.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.563][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:35.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:35.576][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:35.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.580][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.583][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:35.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.591][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.600][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:35.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:35.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:35.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.617][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:35.620][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:35.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:35.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.634][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:35.636][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:35.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.650][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:35.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:35.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.655][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:35.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:35.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:35.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:35.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:35.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:35.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:35.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:35.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:35.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:35.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:35.750][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2024-06-15 16:24:35.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:35.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:35.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:35.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:35.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:35.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:35.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:35.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:35.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:35.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:35.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:35.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:35.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:35.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:35.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:35.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:35.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:35.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:35.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:35.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:35.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:35.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:35.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:35.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:35.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:35.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:35.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:35.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:35.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:35.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:35.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:35.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:35.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:35.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:35.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:35.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:35.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:35.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:35.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:36.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:36.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:36.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:36.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:36.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:36.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:36.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:36.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:36.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:36.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:36.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:36.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:36.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:36.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:36.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:36.105][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2024-06-15 16:24:36.107][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:36.110][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2024-06-15 16:24:36.113][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:36.115][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:36.117][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:36.119][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:36.121][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:36.123][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:36.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:36.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:36.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:36.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:36.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:36.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:36.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:36.154][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2024-06-15 16:24:36.160][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:36.162][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:36.165][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2024-06-15 16:24:36.529][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2024-06-15 16:24:36.888][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:36.893][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2024-06-15 16:24:36.900][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2024-06-15 16:24:36.906][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2024-06-15 16:24:36.910][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:36.912][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:36.915][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:36.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:36.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:36.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:36.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:36.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:36.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:36.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:36.943][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:36.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:36.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:36.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.960][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:36.961][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:36.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:36.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.975][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:36.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:36.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:36.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:36.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:36.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:36.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:36.997][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:36.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:37.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:37.009][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:37.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.023][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:37.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:37.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.031][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:37.034][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:37.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:37.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:37.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.065][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:37.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:37.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:37.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:37.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.083][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:37.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:37.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.100][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:37.102][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:37.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:37.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:37.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:37.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:37.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:37.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:37.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:37.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:37.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:37.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:37.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:37.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:37.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:37.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:37.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:37.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:37.201][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2024-06-15 16:24:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:37.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:37.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:37.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:37.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:37.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:37.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:37.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:37.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:37.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:37.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:37.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:37.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:37.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:37.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:37.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:37.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:37.317][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2024-06-15 16:24:37.319][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:37.322][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2024-06-15 16:24:37.325][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:37.328][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:37.330][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:37.333][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:37.335][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:37.337][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:37.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:37.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:37.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:37.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:37.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:37.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:37.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:37.366][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2024-06-15 16:24:37.371][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:37.373][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:37.376][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2024-06-15 16:24:37.741][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2024-06-15 16:24:38.120][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:38.124][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2024-06-15 16:24:38.132][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2024-06-15 16:24:38.138][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2024-06-15 16:24:38.143][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:38.146][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:38.149][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:38.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:38.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:38.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:38.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:38.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:38.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:38.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:38.180][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:38.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:38.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:38.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.202][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:38.205][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:38.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.219][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:38.221][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:38.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.225][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:38.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:38.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.243][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:38.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:38.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:38.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:38.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:38.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:38.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.281][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:38.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:38.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.288][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.290][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:38.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:38.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:38.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:38.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.306][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:38.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.317][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:38.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:38.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.324][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:38.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:38.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.336][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:38.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:38.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.341][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:38.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:38.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.352][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:38.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:38.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:38.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:38.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:38.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:38.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:38.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:38.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:38.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:38.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:38.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:38.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:38.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:38.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:38.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:38.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:38.443][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2024-06-15 16:24:38.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:38.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:38.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:38.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:38.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:38.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:38.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:38.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:38.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:38.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:38.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:38.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:38.494][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2024-06-15 16:24:38.496][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:38.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2024-06-15 16:24:38.501][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:38.504][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:38.506][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:38.508][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:38.510][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:38.512][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:38.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:38.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:38.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:38.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:38.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:38.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:38.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:38.542][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2024-06-15 16:24:38.548][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:38.550][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:38.553][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2024-06-15 16:24:38.920][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2024-06-15 16:24:39.294][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:39.298][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2024-06-15 16:24:39.305][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2024-06-15 16:24:39.311][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2024-06-15 16:24:39.315][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:39.317][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:39.320][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:39.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:39.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:39.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:39.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:39.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:39.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:39.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:39.351][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:39.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:39.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:39.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.367][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:39.369][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:39.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.382][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:39.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:39.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:39.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:39.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:39.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:39.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:39.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.415][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:39.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:39.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:39.432][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:39.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.438][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:39.440][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:39.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:39.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:39.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:39.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.472][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:39.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:39.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:39.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:39.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.509][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:39.512][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:39.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.517][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:39.531][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:39.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:39.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:39.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:39.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:39.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:39.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:39.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:39.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:39.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:39.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:39.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:39.629][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2024-06-15 16:24:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:39.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:39.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:39.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:39.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:39.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:39.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:39.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:39.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:39.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:39.681][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2024-06-15 16:24:39.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:39.686][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2024-06-15 16:24:39.689][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:39.692][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:39.694][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:39.696][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:39.699][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:39.701][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:39.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:39.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:39.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:39.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:39.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:39.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:39.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:39.730][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2024-06-15 16:24:39.736][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:39.738][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:39.741][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2024-06-15 16:24:40.105][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2024-06-15 16:24:40.470][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:40.474][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2024-06-15 16:24:40.481][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2024-06-15 16:24:40.487][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2024-06-15 16:24:40.490][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:40.493][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:40.495][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:40.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:40.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:40.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:40.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:40.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:40.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:40.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:40.525][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:40.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:40.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.530][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.540][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:40.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:40.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.556][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:40.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:40.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:40.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:40.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:40.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.580][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.591][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:40.593][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:40.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:40.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.608][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:40.610][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.617][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:40.619][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:40.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:40.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:40.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.653][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:40.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:40.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.671][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:40.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:40.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:40.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.690][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:40.692][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:40.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:40.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:40.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:40.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:40.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:40.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:40.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:40.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:40.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:40.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:40.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:40.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:40.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:40.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:40.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:40.790][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2024-06-15 16:24:40.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:40.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:40.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:40.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:40.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:40.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:40.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:40.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:40.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:40.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:40.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:40.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:40.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:40.836][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2024-06-15 16:24:40.838][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:40.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2024-06-15 16:24:40.844][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:40.846][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:40.848][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:40.850][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:40.852][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:40.855][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:40.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:40.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:40.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:40.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:40.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:40.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:40.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:40.886][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2024-06-15 16:24:40.892][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:40.894][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:40.897][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2024-06-15 16:24:41.262][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2024-06-15 16:24:41.627][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:41.633][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2024-06-15 16:24:41.640][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2024-06-15 16:24:41.647][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2024-06-15 16:24:41.651][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:41.654][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:41.656][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:41.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:41.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:41.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:41.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:41.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:41.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:41.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:41.705][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:41.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:41.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.722][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:41.724][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:41.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.728][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.739][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:41.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:41.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:41.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:41.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:41.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:41.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:41.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.771][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:41.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:41.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:41.791][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:41.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.797][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:41.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:41.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.806][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:41.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:41.817][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:41.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.821][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.832][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:41.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:41.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.838][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:41.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:41.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.849][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:41.852][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:41.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:41.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:41.870][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:41.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:41.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:41.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:41.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:41.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:41.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:41.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:41.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:41.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:41.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:41.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:41.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:41.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:41.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:41.972][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2024-06-15 16:24:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:41.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:41.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:41.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:42.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:42.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:42.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:42.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:42.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:42.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:42.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:42.025][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2024-06-15 16:24:42.027][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:42.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2024-06-15 16:24:42.034][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:42.036][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:42.039][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:42.041][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:42.044][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:42.045][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:42.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:42.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:42.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:42.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:42.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:42.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:42.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:42.074][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2024-06-15 16:24:42.079][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:42.081][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:42.084][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2024-06-15 16:24:42.451][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2024-06-15 16:24:42.819][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:42.823][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2024-06-15 16:24:42.830][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2024-06-15 16:24:42.836][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2024-06-15 16:24:42.839][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:42.842][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:42.844][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:42.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:42.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:42.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:42.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:42.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:42.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:42.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:42.875][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:42.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:42.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.892][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:42.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:42.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:42.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:42.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.909][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:42.911][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:42.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:42.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:42.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:42.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:42.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:42.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:42.960][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:42.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.966][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:42.968][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:42.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:42.983][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:42.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:42.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:42.996][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:42.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:43.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:43.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.011][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:43.013][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:43.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:43.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:43.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:43.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:43.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:43.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:43.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:43.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:43.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:43.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:43.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:43.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:43.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:43.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:43.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:43.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:43.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:43.134][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2024-06-15 16:24:43.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:43.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:43.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:43.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:43.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:43.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:43.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:43.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:43.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:43.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:43.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:43.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:43.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:43.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:43.184][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2024-06-15 16:24:43.189][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:43.192][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2024-06-15 16:24:43.194][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:43.196][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:43.198][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:43.201][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:43.203][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:43.204][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:43.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:43.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:43.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:43.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:43.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:43.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:43.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:43.233][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2024-06-15 16:24:43.238][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:43.240][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:43.242][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2024-06-15 16:24:43.606][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2024-06-15 16:24:43.970][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:43.975][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2024-06-15 16:24:43.983][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2024-06-15 16:24:43.989][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2024-06-15 16:24:43.993][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:43.995][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:43.999][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:44.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:44.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:44.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:44.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:44.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:44.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:44.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:44.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:44.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.050][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:44.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:44.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:44.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:44.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:44.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:44.089][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:44.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.094][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:44.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:44.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:44.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:44.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:44.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.125][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:44.128][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:44.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.135][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:44.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:44.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:44.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:44.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:44.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.177][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:44.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:44.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:44.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:44.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.194][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:44.196][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:44.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.211][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:44.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:44.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:44.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:44.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:44.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:44.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:44.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:44.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:44.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:44.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:44.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:44.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:44.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:44.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:44.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:44.305][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2024-06-15 16:24:44.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:44.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:44.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:44.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:44.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:44.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:44.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:44.380][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:44.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:44.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:44.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:44.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:44.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:44.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:44.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.423][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.425][private$selectFields]
biodb.TRACE[2024-06-15 16:24:44.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:44.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:44.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.454][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.464][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:44.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.492][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-06-15 16:24:44.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:44.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:44.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:44.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:44.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:44.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:44.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.535][private$selectFields]
biodb.TRACE[2024-06-15 16:24:44.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:44.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:44.540][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.548][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.555][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.583][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-06-15 16:24:44.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:44.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:44.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:44.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:44.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:44.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.659][private$selectFields]
biodb.TRACE[2024-06-15 16:24:44.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:44.663][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:44.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.686][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:44.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.696][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:44.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-06-15 16:24:44.726][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:44.728][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:44.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:44.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:44.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:44.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:44.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:44.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:44.816][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:44.822][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:44.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2024-06-15 16:24:44.828][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:44.839][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2024-06-15 16:24:44.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:44.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:44.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:44.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:44.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:44.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:44.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:44.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:44.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:44.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:44.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:44.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:44.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:44.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:44.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:44.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:44.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:44.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:44.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:44.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:44.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:44.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:44.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:45.044][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:45.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.091][private$selectFields]
biodb.TRACE[2024-06-15 16:24:45.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:45.095][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:45.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.115][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.118][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.127][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:45.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-06-15 16:24:45.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.201][private$selectFields]
biodb.TRACE[2024-06-15 16:24:45.203][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:45.204][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:45.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.225][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.234][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-06-15 16:24:45.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.303][private$selectFields]
biodb.TRACE[2024-06-15 16:24:45.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:45.307][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:45.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.343][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.354][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:45.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-06-15 16:24:45.380][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:45.382][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:45.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:45.410][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:45.415][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:45.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2024-06-15 16:24:45.420][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:45.426][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2024-06-15 16:24:45.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:45.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:45.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:45.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:45.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:45.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:45.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:45.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:45.831][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:45.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:45.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:45.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:45.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:45.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:45.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.884][private$selectFields]
biodb.TRACE[2024-06-15 16:24:45.886][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:45.888][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:45.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.899][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.913][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:45.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.924][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:45.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-06-15 16:24:45.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:45.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:45.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.028][private$selectFields]
biodb.TRACE[2024-06-15 16:24:46.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:46.032][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:46.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.042][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.054][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.063][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:46.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-06-15 16:24:46.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.169][private$selectFields]
biodb.TRACE[2024-06-15 16:24:46.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:46.174][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:46.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.231][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.240][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.242][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-06-15 16:24:46.287][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:46.290][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:46.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:46.324][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:46.330][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:46.333][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2024-06-15 16:24:46.336][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:46.347][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2024-06-15 16:24:46.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:46.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:46.454][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:46.460][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:46.463][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2024-06-15 16:24:46.466][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:46.477][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2024-06-15 16:24:46.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:46.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:46.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:46.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:46.651][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:46.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.691][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.692][private$selectFields]
biodb.TRACE[2024-06-15 16:24:46.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:46.696][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:46.697][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.715][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.724][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:46.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-06-15 16:24:46.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.788][private$selectFields]
biodb.TRACE[2024-06-15 16:24:46.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:46.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:46.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.807][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.811][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.818][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.820][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:46.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-06-15 16:24:46.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:46.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:46.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:46.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:46.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:46.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:46.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.885][private$selectFields]
biodb.TRACE[2024-06-15 16:24:46.887][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:46.889][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:46.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.909][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:46.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.917][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:46.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:46.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-06-15 16:24:46.943][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:46.945][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:47.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:47.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:47.060][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:47.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-15 16:24:47.066][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:47.075][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-15 16:24:47.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:47.128][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:47.134][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:47.137][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-15 16:24:47.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:47.162][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-15 16:24:47.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:47.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:47.268][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:47.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.310][private$selectFields]
biodb.TRACE[2024-06-15 16:24:47.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:47.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:47.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.335][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.340][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.345][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-15 16:24:47.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.413][private$selectFields]
biodb.TRACE[2024-06-15 16:24:47.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:47.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:47.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.437][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.446][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.471][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:24:47.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.533][private$selectFields]
biodb.TRACE[2024-06-15 16:24:47.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:47.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:47.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.556][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.566][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-15 16:24:47.592][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:47.594][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:47.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:47.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:47.629][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:47.632][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-06-15 16:24:47.635][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:47.642][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-06-15 16:24:47.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:47.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:47.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:47.761][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:47.764][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-06-15 16:24:47.767][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:47.782][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-06-15 16:24:47.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:47.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:47.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:47.937][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:47.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:47.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:47.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:47.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:47.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:47.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:47.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.979][private$selectFields]
biodb.TRACE[2024-06-15 16:24:47.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:47.984][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:47.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:47.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:47.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:47.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:47.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.005][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.014][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:48.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.041][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-06-15 16:24:48.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.086][private$selectFields]
biodb.TRACE[2024-06-15 16:24:48.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:48.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:48.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.101][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.114][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-06-15 16:24:48.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.211][private$selectFields]
biodb.TRACE[2024-06-15 16:24:48.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:48.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:48.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.234][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:48.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.243][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:48.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-06-15 16:24:48.269][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:48.270][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:48.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:48.301][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:48.307][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:48.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-06-15 16:24:48.314][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:48.326][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-06-15 16:24:48.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.808][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:48.814][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:48.817][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-06-15 16:24:48.820][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:48.836][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-06-15 16:24:48.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:48.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:48.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:48.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:48.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:48.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:48.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:48.982][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:48.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:48.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:48.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:48.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.023][private$selectFields]
biodb.TRACE[2024-06-15 16:24:49.025][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:49.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:49.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.048][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.058][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-06-15 16:24:49.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.129][private$selectFields]
biodb.TRACE[2024-06-15 16:24:49.131][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:49.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:49.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.152][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.159][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.161][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-06-15 16:24:49.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.224][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.226][private$selectFields]
biodb.TRACE[2024-06-15 16:24:49.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:49.230][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:49.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.247][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.249][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.258][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.297][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-06-15 16:24:49.299][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:49.301][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:49.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:49.374][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:49.379][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:49.382][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2024-06-15 16:24:49.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:49.393][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2024-06-15 16:24:49.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:49.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:49.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:49.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:49.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:49.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:49.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:49.709][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:49.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.756][private$selectFields]
biodb.TRACE[2024-06-15 16:24:49.758][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:49.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:49.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.782][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.789][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:49.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.818][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-15 16:24:49.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.874][private$selectFields]
biodb.TRACE[2024-06-15 16:24:49.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:49.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:49.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.899][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.907][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.909][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-06-15 16:24:49.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:49.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:49.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:49.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:49.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:49.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:49.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:49.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.981][private$selectFields]
biodb.TRACE[2024-06-15 16:24:49.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:49.984][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:49.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:49.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:49.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:49.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:49.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.008][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.019][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:50.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-06-15 16:24:50.047][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:50.049][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:50.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:50.096][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:50.103][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:50.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2024-06-15 16:24:50.108][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:50.115][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2024-06-15 16:24:50.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:50.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:50.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:50.277][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:50.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.320][private$selectFields]
biodb.TRACE[2024-06-15 16:24:50.321][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:50.323][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:50.325][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.344][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.353][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:50.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-06-15 16:24:50.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.429][private$selectFields]
biodb.TRACE[2024-06-15 16:24:50.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:50.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:50.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.454][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:50.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-06-15 16:24:50.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.526][private$selectFields]
biodb.TRACE[2024-06-15 16:24:50.528][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:50.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:50.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.549][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:50.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.558][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:50.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:50.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-06-15 16:24:50.583][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:50.585][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:50.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:50.616][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:50.622][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:50.625][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2024-06-15 16:24:50.628][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:50.632][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2024-06-15 16:24:50.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:50.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:50.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:50.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:50.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:50.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:50.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:50.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:50.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:50.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:50.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:50.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:50.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:50.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:51.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:51.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:51.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:51.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:51.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:51.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:51.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:51.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:51.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:51.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:51.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:51.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:51.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:51.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:51.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:51.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:51.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:51.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:51.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:51.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:51.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:51.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:51.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:51.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:51.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:51.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:51.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:51.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:51.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:51.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:51.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:51.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:51.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:51.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:51.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:51.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:51.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:51.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:52.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:52.836][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:52.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:52.876][private$selectFields]
biodb.TRACE[2024-06-15 16:24:52.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:52.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:52.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:52.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:52.901][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:52.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.910][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-06-15 16:24:52.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:52.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:52.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:52.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:52.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:52.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:52.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:52.977][private$selectFields]
biodb.TRACE[2024-06-15 16:24:52.978][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:52.980][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:52.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:52.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.989][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:52.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:52.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:52.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:53.000][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:53.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.007][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.008][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:53.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-06-15 16:24:53.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:53.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:53.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:53.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:53.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:53.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:53.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:53.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.087][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:53.088][private$selectFields]
biodb.TRACE[2024-06-15 16:24:53.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:53.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:53.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:53.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.101][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.108][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:53.112][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:53.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.119][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.121][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:53.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-06-15 16:24:53.146][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:53.148][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:24:53.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:53.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:53.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:53.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:53.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:53.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:53.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:53.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:53.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:53.312][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:53.318][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:53.320][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:53.323][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:24:53.698][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:24:54.226][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:54.231][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2024-06-15 16:24:54.240][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2024-06-15 16:24:54.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:54.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:54.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:54.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:54.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:54.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:54.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:54.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:54.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:54.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:54.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:54.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:54.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:54.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:54.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:54.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:54.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:54.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:54.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:54.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:54.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:54.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:54.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:54.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:54.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:54.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:54.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:54.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:54.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:54.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:54.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:54.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:54.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:54.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:54.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:54.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:54.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:54.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:54.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:54.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:54.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:54.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:54.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:54.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:54.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:54.521][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2024-06-15 16:24:54.524][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:54.527][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2024-06-15 16:24:54.531][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:54.533][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:54.536][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:54.538][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:54.541][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:54.543][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:54.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:54.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:54.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:54.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:54.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:54.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:54.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:54.576][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2024-06-15 16:24:54.582][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:54.584][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:54.587][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2024-06-15 16:24:54.946][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2024-06-15 16:24:55.313][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:55.317][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2024-06-15 16:24:55.324][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2024-06-15 16:24:55.330][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2024-06-15 16:24:55.334][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:55.337][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:55.340][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:55.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:55.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:55.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:55.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:55.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:55.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:55.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:55.370][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:55.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:55.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.375][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:55.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:55.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.385][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:55.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:55.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:55.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.422][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:55.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:55.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:55.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:55.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:55.439][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:55.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:55.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.452][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:55.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:55.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:55.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:55.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.466][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:55.468][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:55.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:55.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:55.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.480][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:55.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:55.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:55.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.498][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.502][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.511][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:55.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:55.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.517][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:55.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.527][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:55.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:55.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.533][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:55.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.542][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:55.544][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:55.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.548][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:55.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:55.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:55.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:55.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:55.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:55.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:55.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:55.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:55.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:55.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:55.628][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2024-06-15 16:24:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:55.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:55.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:55.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:55.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:55.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:55.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:55.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:55.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:55.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:55.678][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2024-06-15 16:24:55.680][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:55.683][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2024-06-15 16:24:55.686][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:55.688][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:55.690][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:55.692][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:55.694][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:55.696][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:55.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:55.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:55.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:55.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:55.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:55.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:55.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:55.724][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2024-06-15 16:24:55.729][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:55.731][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:55.734][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2024-06-15 16:24:56.094][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2024-06-15 16:24:56.458][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:56.462][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2024-06-15 16:24:56.470][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2024-06-15 16:24:56.476][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2024-06-15 16:24:56.480][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:24:56.483][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:24:56.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-15 16:24:56.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:56.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:56.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:56.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:56.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:56.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:56.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:56.515][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:56.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:56.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.522][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:56.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.533][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:56.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:56.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:56.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.550][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:56.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:56.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:56.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:56.569][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:56.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:56.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:56.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.582][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:56.584][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:56.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:56.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.599][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:56.601][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:56.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.607][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:56.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:56.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.615][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:56.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:56.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.624][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-15 16:24:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:56.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.632][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.649][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:56.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:56.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.655][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:56.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:56.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.665][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:56.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:56.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.671][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-15 16:24:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:56.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:56.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:56.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:56.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:56.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:56.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:56.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:56.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:56.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:56.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:56.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:56.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:56.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:56.774][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2024-06-15 16:24:56.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:56.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:56.821][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:56.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:56.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:56.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:56.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:56.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:56.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:56.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:56.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:56.862][private$selectFields]
biodb.TRACE[2024-06-15 16:24:56.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:56.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:56.867][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:56.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:56.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:56.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.894][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.896][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:56.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-06-15 16:24:56.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:56.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:56.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:56.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:56.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:56.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:56.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:56.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:56.969][private$selectFields]
biodb.TRACE[2024-06-15 16:24:56.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:56.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:56.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:56.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:56.991][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:56.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:56.995][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:56.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:56.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:57.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.031][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-06-15 16:24:57.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:57.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:57.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:57.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:57.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:57.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:57.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:57.074][private$selectFields]
biodb.TRACE[2024-06-15 16:24:57.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:57.078][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:57.080][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:57.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.098][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:57.100][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-15 16:24:57.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.103][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.108][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-15 16:24:57.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:57.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:57.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:57.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-06-15 16:24:57.136][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:24:57.139][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:24:57.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:57.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:57.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:57.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:57.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:57.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:57.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:57.169][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:57.175][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:57.177][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:57.180][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-15 16:24:57.554][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-15 16:24:58.156][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:58.160][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2024-06-15 16:24:58.169][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2024-06-15 16:24:58.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:58.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:58.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:58.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:58.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:58.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:58.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:58.210][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2024-06-15 16:24:58.212][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:24:58.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2024-06-15 16:24:58.217][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:24:58.219][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:24:58.222][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:24:58.224][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-15 16:24:58.225][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:24:58.227][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:24:58.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:58.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:58.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:58.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:58.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:58.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:58.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:58.256][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2024-06-15 16:24:58.260][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:24:58.262][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:24:58.265][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2024-06-15 16:24:58.629][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2024-06-15 16:24:58.989][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:24:58.994][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.INFO [2024-06-15 16:24:59.335][biodb::testThat]
biodb.INFO [2024-06-15 16:24:59.337][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-06-15 16:24:59.339][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:24:59.341][biodb::testThat]
biodb.TRACE[2024-06-15 16:24:59.347][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:24:59.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:24:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.356][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:24:59.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:24:59.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.365][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:24:59.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:24:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:59.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:59.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:59.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:59.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:59.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:59.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:59.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:24:59.525][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:59.530][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:59.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-15 16:24:59.535][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:59.539][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-15 16:24:59.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:59.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:59.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:59.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:59.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:59.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:59.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:59.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:59.591][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:24:59.597][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:24:59.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-15 16:24:59.602][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:24:59.606][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-15 16:24:59.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:59.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:59.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:59.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:59.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:59.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:59.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:59.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:59.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:59.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:59.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:59.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:59.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:59.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:24:59.705][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:24:59.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:24:59.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:24:59.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:24:59.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:24:59.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:24:59.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:24:59.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:24:59.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:59.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:59.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:59.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.748][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:59.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.756][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:59.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:59.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:59.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:59.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:59.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:59.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:59.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:59.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:59.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:59.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:59.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:59.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:59.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:59.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:59.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.840][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:59.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:59.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:59.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:59.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:24:59.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:59.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:24:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:24:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:59.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:24:59.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:24:59.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:59.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:59.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:24:59.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:24:59.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.926][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:24:59.928][private$selectFields]
biodb.TRACE[2024-06-15 16:24:59.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:24:59.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:24:59.933][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:24:59.935][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:24:59.937][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:24:59.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.942][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:24:59.944][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:24:59.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:24:59.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:24:59.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.958][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:24:59.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:24:59.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:24:59.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:24:59.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:24:59.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:24:59.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.983][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:59.985][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:24:59.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.990][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:24:59.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:24:59.995][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:24:59.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:24:59.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.004][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.006][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.012][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.019][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.021][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.027][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.034][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.036][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.049][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.078][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.092][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.094][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.100][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.107][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.109][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.114][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:00.116][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:00.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.125][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.127][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.155][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.170][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.180][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.188][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.197][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.204][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.210][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.214][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.220][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:00.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.245][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.253][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.261][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.414][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.490][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-06-15 16:25:00.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:00.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:00.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:00.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:00.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:00.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:00.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:00.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.531][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.539][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.605][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.702][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:00.704][private$selectFields]
biodb.TRACE[2024-06-15 16:25:00.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:00.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:00.709][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:00.711][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.719][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.721][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.726][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.736][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.743][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.759][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.760][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.773][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.780][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.793][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.800][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.806][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.810][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.814][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.815][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.821][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.823][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.825][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.828][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.837][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.839][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.842][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.846][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.860][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.871][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.873][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.880][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.882][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.887][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:00.897][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:00.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.904][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:00.907][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:00.909][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:00.911][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:00.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.918][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:00.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:00.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:00.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.934][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:00.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:00.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.941][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:00.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:00.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.954][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:00.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.960][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.962][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:00.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.969][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:00.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:00.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.986][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.989][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:00.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:00.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:00.995][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:00.997][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:00.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.004][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:01.006][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:01.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.012][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:01.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.163][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.171][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:01.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:01.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:01.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:01.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:01.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:01.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:01.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:01.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-06-15 16:25:01.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:01.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:01.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:01.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:01.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:01.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:01.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:01.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.353][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:01.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:01.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:01.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:01.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:01.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.524][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:01.525][private$selectFields]
biodb.TRACE[2024-06-15 16:25:01.527][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:01.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:01.530][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:01.532][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.534][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.537][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.539][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.551][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.553][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.558][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.567][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.569][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.572][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.576][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.595][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.597][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.600][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.602][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:01.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:01.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:01.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.616][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.622][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.624][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.632][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.634][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.639][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.640][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.643][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:01.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.655][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.665][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.669][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.671][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.678][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:01.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.685][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:01.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:01.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.693][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:01.695][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:01.697][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.704][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.706][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.730][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.737][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.742][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.746][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.750][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.755][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.763][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.765][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:01.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.770][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:01.772][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:01.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.777][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:01.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:01.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.816][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:01.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:01.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:01.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:01.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:01.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:01.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:01.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:01.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.986][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:01.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:01.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:01.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:02.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:02.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:02.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:02.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:02.058][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:02.061][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:02.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:02.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:02.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:02.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:02.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:02.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:02.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:02.092][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:02.097][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:02.100][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-06-15 16:25:02.102][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:02.106][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-06-15 16:25:02.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:02.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:02.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:02.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:02.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:02.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:02.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:02.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:02.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:02.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:02.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:02.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:02.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:02.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:02.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:02.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:02.200][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:02.205][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:02.208][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-06-15 16:25:02.210][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:02.214][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-06-15 16:25:02.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:02.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:02.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:02.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:02.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:02.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:02.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:02.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:02.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:02.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:02.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:02.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:02.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:02.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:02.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:02.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:02.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:02.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:02.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:02.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:02.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:02.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:02.374][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:02.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:02.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:02.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:02.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:02.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:02.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:02.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:02.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:02.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:02.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:02.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:02.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:02.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:02.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:02.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:02.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:02.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:02.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:02.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.493][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.501][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:02.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:02.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:02.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.585][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:02.587][private$selectFields]
biodb.TRACE[2024-06-15 16:25:02.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:02.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:02.593][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:02.594][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:02.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:02.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.599][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.600][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:02.602][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:02.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.613][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.615][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:02.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:02.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:02.624][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:02.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.628][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.636][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.638][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.639][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.643][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.645][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.660][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.663][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.668][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:02.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:02.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:02.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:02.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.684][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:02.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:02.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.691][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:02.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:02.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.704][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:02.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:02.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:02.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:02.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.738][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.742][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.747][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.763][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.765][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.770][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:02.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:02.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.777][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:02.778][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:02.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.782][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.784][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:02.786][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:02.788][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:02.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:02.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.797][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:02.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:02.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.813][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:02.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:02.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:02.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:02.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.827][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:02.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.842][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.844][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:02.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.847][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:02.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.854][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:02.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.860][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:02.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:02.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.866][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:02.868][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:02.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.872][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:02.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:02.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:02.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:02.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:02.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:02.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:02.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:02.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:02.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:02.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:02.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:02.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:02.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:02.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:02.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:02.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:02.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:02.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:02.999][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.072][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.079][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:03.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:03.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:03.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:03.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:03.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:03.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:03.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:03.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.178][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:03.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:03.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:03.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:03.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:03.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.255][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.262][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.358][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:03.360][private$selectFields]
biodb.TRACE[2024-06-15 16:25:03.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:03.363][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:03.365][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:03.367][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.374][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.376][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.388][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:03.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:03.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.395][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:03.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:03.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.402][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.409][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.411][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.417][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.418][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.430][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.432][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.437][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.447][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.452][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.459][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.464][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.473][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:03.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:03.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:03.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:03.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.486][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.494][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.496][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.498][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.502][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.504][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.506][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.514][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.518][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.520][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.522][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.526][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.528][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.536][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.542][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.544][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:03.546][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:03.548][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.550][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.554][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.556][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.558][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.572][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:03.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:03.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:03.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:03.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.594][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.598][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.604][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.610][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.620][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.627][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.635][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.637][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.642][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:03.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:03.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:03.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:03.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.730][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:03.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:03.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:03.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:03.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:03.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:03.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:03.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.780][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.787][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:03.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:03.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:03.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:03.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:03.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:03.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:03.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:03.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:03.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:03.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:03.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:03.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:03.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:03.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:03.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:03.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:03.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:03.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:03.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:03.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:03.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:04.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:04.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.037][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:04.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.045][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:04.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:04.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:04.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:04.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.125][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:04.126][private$selectFields]
biodb.TRACE[2024-06-15 16:25:04.128][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:04.130][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:04.132][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:04.133][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:04.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:04.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.141][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:04.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:04.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.153][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:04.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:04.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.157][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:04.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:04.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.168][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.170][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:04.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:04.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.176][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.177][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.190][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.192][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.194][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.199][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:04.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:04.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:04.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:04.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.211][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:04.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:04.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.221][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:04.223][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:04.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.227][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.236][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:04.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:04.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:04.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:04.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.248][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.257][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:04.259][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:04.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.263][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.268][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.278][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.280][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.286][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:04.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:04.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.293][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:04.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:04.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.301][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:04.304][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:04.306][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:04.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:04.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.314][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:04.316][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:04.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.330][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:04.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:04.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.336][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:04.340][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:04.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.346][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.354][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.367][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.369][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.375][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.377][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:04.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:04.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.382][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.384][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:04.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:04.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.390][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.392][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:04.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:04.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:04.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:04.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:04.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:04.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:04.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:04.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:04.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:04.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:04.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:04.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:04.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:04.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:04.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:04.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:04.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:04.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:04.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:04.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:04.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:04.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:04.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:04.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:04.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:04.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:04.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.589][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:04.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:04.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:04.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:04.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:04.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:04.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:04.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:04.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:04.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:04.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:04.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:04.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:04.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:04.660][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:04.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:04.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:04.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:04.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:04.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:04.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:04.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:04.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:04.689][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:04.694][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:04.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-06-15 16:25:04.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:04.703][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-06-15 16:25:04.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:04.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:04.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:04.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:04.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:04.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:04.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:04.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:04.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:04.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:04.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:04.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:04.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:04.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:04.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:04.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:04.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:04.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:04.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:04.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:04.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:04.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:04.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:04.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:04.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:04.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:04.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:04.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:04.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:04.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:04.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:04.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:04.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:04.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:04.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:04.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:04.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:04.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:04.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:04.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:04.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:04.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:04.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:04.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:04.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:04.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:04.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:04.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:04.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:04.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:04.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:04.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:04.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:05.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:05.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:05.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:05.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:05.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:05.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:05.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:05.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:05.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:05.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:05.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:05.078][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:05.084][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:05.087][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-06-15 16:25:05.090][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:05.093][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-06-15 16:25:05.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:05.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:05.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:05.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:05.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:05.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:05.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:05.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:05.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:05.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:05.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:05.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:05.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:05.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:05.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:05.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:05.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:05.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:05.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:05.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:05.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:05.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:05.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:05.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:05.241][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:05.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:05.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:05.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:05.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:05.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:05.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:05.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:05.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:05.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:05.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:05.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:05.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:05.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:05.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:05.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:05.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:05.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:05.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:05.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:05.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:05.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:05.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.401][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:05.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:05.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:05.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:05.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:05.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:05.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.438][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:05.439][private$selectFields]
biodb.TRACE[2024-06-15 16:25:05.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:05.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:05.442][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:05.444][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:05.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:05.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.452][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:05.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:05.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.466][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:05.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:05.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:05.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:05.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.475][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.481][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.483][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.487][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.501][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.503][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.505][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.509][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.511][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:05.514][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:05.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.518][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.520][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:05.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:05.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.526][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.528][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:05.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:05.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.536][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:05.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:05.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.550][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.551][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:05.553][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:05.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:05.560][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:05.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.572][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.574][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.580][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.595][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.596][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.603][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:05.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:05.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.608][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:05.609][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:05.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.613][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:05.614][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:05.616][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:05.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:05.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.619][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.621][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:05.622][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:05.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.632][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.634][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:05.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:05.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:05.644][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:05.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.650][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.656][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.658][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.660][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.665][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.667][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.684][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.686][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.691][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:05.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:05.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:05.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:05.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.705][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:05.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:05.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:05.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:05.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:05.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:05.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:05.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:05.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.736][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:05.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:05.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:05.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:05.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:05.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:05.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:05.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:05.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:05.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:05.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:05.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:05.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:05.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:05.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.864][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.872][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:05.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:05.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.928][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:05.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:05.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:05.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:05.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:05.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:05.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:05.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:05.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:05.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:05.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:05.998][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-06-15 16:25:06.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:06.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:06.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:06.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:06.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:06.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:06.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:06.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.108][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.143][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.189][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:06.191][private$selectFields]
biodb.TRACE[2024-06-15 16:25:06.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:06.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:06.197][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:06.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.207][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.209][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.222][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.227][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.236][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.242][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.244][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.248][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.249][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.258][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.263][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.265][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.271][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.278][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.280][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.285][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.292][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.294][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.297][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.304][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.306][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.329][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.334][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.348][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.350][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.353][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.355][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.362][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.364][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.367][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.369][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:06.371][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:06.373][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.381][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.383][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.395][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.418][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.425][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.431][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.438][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.440][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.446][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.453][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.460][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.462][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.467][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.643][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-06-15 16:25:06.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:06.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:06.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:06.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:06.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:06.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:06.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.827][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.834][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:06.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:06.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:06.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.912][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:06.914][private$selectFields]
biodb.TRACE[2024-06-15 16:25:06.916][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:06.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:06.919][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:06.921][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:06.923][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:06.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.928][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:06.930][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:06.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.933][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:06.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.942][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:06.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:06.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:06.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:06.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.956][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.958][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:06.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.963][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.965][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:06.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.970][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:06.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:06.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.984][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.986][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:06.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:06.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:06.991][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:06.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:07.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:07.014][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:07.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.020][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:07.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:07.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.027][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:07.028][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:07.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.037][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:07.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:07.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.042][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:07.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:07.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.049][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:07.060][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:07.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.063][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.065][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.079][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.086][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:07.088][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:07.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:07.095][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:07.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.100][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:07.102][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:07.104][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:07.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:07.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.111][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:07.112][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:07.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.125][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:07.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:07.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.130][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.132][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:07.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:07.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.147][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.159][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.161][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.163][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.169][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:07.171][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:07.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.177][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:07.179][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.185][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:07.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:07.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:07.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:07.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.209][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:07.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:07.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:07.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:07.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:07.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:07.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.272][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:07.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:07.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:07.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:07.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:07.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:07.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:07.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:07.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:07.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:07.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:07.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:07.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:07.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:07.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.441][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:07.443][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:07.446][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:07.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:07.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:07.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:07.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:07.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:07.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:07.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:07.488][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:07.495][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:07.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-15 16:25:07.500][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:07.503][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-15 16:25:07.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:07.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:07.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:07.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:07.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:07.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:07.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:07.555][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:07.560][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:07.562][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-15 16:25:07.565][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:07.568][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-15 16:25:07.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:07.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:07.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:07.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:07.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:07.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:07.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:07.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:07.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:07.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:07.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:07.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:07.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:07.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:07.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:07.681][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:07.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:07.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:07.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:07.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:07.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:07.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:07.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:07.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:07.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:07.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:07.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:07.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.727][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:07.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:07.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:07.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:07.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:07.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:07.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:07.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:07.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:07.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:07.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:07.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:07.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:07.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:07.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:07.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:07.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:07.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:07.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:07.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:07.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:07.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.894][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:07.896][private$selectFields]
biodb.TRACE[2024-06-15 16:25:07.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:07.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:07.902][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:07.904][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:07.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:07.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.910][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.912][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:07.914][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:07.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:07.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.928][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:07.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:07.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:07.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:07.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:07.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:07.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:07.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.960][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:07.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.968][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:07.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.976][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.978][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:07.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.984][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:07.986][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:07.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:07.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:07.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:07.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:07.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.000][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.002][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.009][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.015][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.017][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.019][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.032][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.047][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.057][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.062][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.078][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.085][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:08.087][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:08.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:08.095][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:08.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.100][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.102][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.108][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:08.110][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:08.112][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.118][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.120][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.135][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.151][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.158][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.166][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.174][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.181][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:08.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:08.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.189][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:08.191][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:08.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.197][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:08.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:08.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:08.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:08.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:08.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:08.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:08.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:08.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:08.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:08.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:08.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:08.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:08.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-06-15 16:25:08.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:08.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:08.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:08.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:08.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:08.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:08.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:08.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.627][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.635][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:08.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:08.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:08.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:08.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:08.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:08.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:08.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:08.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.722][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.730][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.737][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:08.739][private$selectFields]
biodb.TRACE[2024-06-15 16:25:08.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:08.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:08.745][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:08.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.752][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.766][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.788][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.796][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.807][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.810][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.811][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.813][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.817][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:08.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:08.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.822][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:08.823][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:08.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.826][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.828][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.833][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.837][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.839][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.840][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.843][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.849][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.850][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.853][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.864][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.866][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.872][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.888][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:08.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.894][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:08.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:08.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:08.905][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:08.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.923][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.926][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:08.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.934][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:08.936][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:08.938][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:08.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:08.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.946][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:08.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:08.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:08.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.959][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.960][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:08.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:08.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.968][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:08.969][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:08.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.974][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.976][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:08.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.981][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.983][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:08.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.988][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:08.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:08.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:08.995][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:08.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.002][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.007][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.009][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:09.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:09.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.015][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.017][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:09.018][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:09.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.024][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:09.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.049][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.183][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:09.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:09.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:09.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:09.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:09.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:09.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:09.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:09.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:09.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:09.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:09.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:09.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-06-15 16:25:09.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:09.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:09.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:09.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:09.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:09.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:09.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:09.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.369][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.436][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.444][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.484][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:09.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:09.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:09.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:09.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:09.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:09.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:09.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:09.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.532][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:09.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:09.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.540][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:09.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:09.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.548][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:09.550][private$selectFields]
biodb.TRACE[2024-06-15 16:25:09.552][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:09.566][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:09.569][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:09.571][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.581][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.595][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.597][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.599][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.607][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.611][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.613][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.619][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.623][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.628][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.642][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.643][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.649][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.651][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:09.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:09.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.659][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:09.661][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:09.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.665][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.666][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:09.668][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:09.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.672][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.674][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.680][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.682][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.684][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.691][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.697][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.712][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.718][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.720][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.722][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:09.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.726][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.728][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.735][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.737][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.743][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.745][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.750][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:09.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:09.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.757][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:09.759][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:09.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.764][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:09.766][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:09.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.771][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:09.773][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:09.775][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.781][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.782][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.797][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.804][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.816][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.818][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:09.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.823][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:09.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.834][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.836][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:09.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.842][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:09.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:09.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.850][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:09.852][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:09.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.858][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:09.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:09.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:09.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:09.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:09.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:09.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:09.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:09.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:09.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:09.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:09.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:10.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:10.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:10.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:10.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:10.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:10.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:10.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:10.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.132][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:10.134][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:10.136][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:10.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:10.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:10.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:10.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:10.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:10.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:10.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:10.166][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:10.171][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:10.174][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-06-15 16:25:10.176][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:10.180][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-06-15 16:25:10.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:10.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:10.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:10.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:10.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:10.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:10.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:10.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:10.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:10.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:10.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:10.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:10.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:10.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:10.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:10.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:10.286][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:10.292][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:10.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-06-15 16:25:10.297][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:10.300][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-06-15 16:25:10.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:10.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:10.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:10.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:10.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:10.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:10.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:10.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:10.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:10.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:10.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:10.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:10.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:10.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:10.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:10.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:10.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:10.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:10.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:10.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:10.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:10.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:10.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:10.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:10.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:10.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:10.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:10.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:10.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:10.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:10.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:10.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:10.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:10.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:10.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:10.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:10.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:10.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:10.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:10.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:10.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:10.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:10.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:10.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:10.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:10.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.535][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:10.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:10.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:10.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:10.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:10.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:10.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:10.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:10.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:10.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.625][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:10.627][private$selectFields]
biodb.TRACE[2024-06-15 16:25:10.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:10.630][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:10.632][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:10.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:10.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:10.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.641][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:10.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:10.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.655][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:10.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:10.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:10.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:10.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.676][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.684][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.686][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.691][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.699][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.706][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:10.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:10.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.713][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:10.715][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:10.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.718][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.720][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:10.722][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:10.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.727][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:10.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:10.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.734][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:10.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:10.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.740][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.747][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.749][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:10.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:10.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.755][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:10.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:10.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.767][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.780][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.796][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.798][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.804][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:10.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:10.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:10.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:10.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.831][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.833][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:10.835][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:10.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.841][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:10.843][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:10.845][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:10.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:10.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.851][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.853][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:10.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:10.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.869][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:10.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:10.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:10.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:10.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:10.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.895][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:10.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.899][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.901][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:10.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.907][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.909][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:10.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.917][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:10.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.924][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:10.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:10.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.932][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:10.934][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:10.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.940][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:10.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:10.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:10.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:10.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:10.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:10.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:10.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:10.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:10.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:10.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:10.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:10.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.085][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.171][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:11.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:11.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:11.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:11.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:11.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:11.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:11.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:11.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:11.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:11.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:11.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:11.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:11.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:11.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:11.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:11.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:11.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:11.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:11.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:11.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:11.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:11.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:11.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:11.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:11.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.364][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.373][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:11.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:11.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:11.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:11.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:11.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:11.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:11.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:11.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:11.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.481][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:11.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:11.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.492][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:11.494][private$selectFields]
biodb.TRACE[2024-06-15 16:25:11.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:11.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:11.501][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:11.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:11.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:11.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.509][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.511][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:11.514][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:11.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.518][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.526][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.528][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.541][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.543][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.550][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.551][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.554][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.558][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.560][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.566][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.570][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.574][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.576][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.584][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:11.586][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:11.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.592][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:11.594][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:11.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.600][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:11.602][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:11.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.608][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:11.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:11.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.616][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:11.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:11.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.622][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.632][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.640][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.658][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.664][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.674][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.680][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.682][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.688][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:11.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:11.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:11.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:11.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.704][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:11.706][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:11.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.712][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:11.714][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:11.716][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:11.718][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:11.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.724][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:11.726][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:11.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.737][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.739][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.741][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.771][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.786][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:11.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.794][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:11.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:11.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.802][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:11.804][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:11.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.810][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:11.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:11.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:11.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:11.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:11.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:11.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.834][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:11.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:11.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.841][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:11.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:11.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:11.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:11.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:11.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:11.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:11.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:11.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:11.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:11.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:11.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.010][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:12.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:12.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:12.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:12.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:12.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:12.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:12.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:12.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:12.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:12.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:12.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:12.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:12.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:12.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:12.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:12.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:12.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:12.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:12.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.217][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:12.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:12.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.272][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:12.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:12.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:12.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.330][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:12.332][private$selectFields]
biodb.TRACE[2024-06-15 16:25:12.334][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:12.335][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:12.337][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:12.339][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:12.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:12.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.346][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:12.348][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:12.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.360][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:12.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:12.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.367][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:12.370][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:12.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.373][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.382][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:12.384][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:12.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.387][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.389][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.398][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.401][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.403][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.405][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.410][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.417][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.418][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.423][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:12.425][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:12.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.430][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:12.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:12.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.437][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:12.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:12.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.446][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.451][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:12.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:12.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:12.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:12.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.464][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.472][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:12.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:12.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.478][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.493][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.495][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.498][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.500][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.507][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.509][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.512][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.514][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:12.516][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:12.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.521][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:12.523][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:12.524][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:12.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:12.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.530][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.531][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:12.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:12.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.536][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.545][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:12.547][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:12.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.550][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:12.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:12.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.566][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.571][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.579][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.585][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.586][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.591][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.600][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:12.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:12.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:12.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:12.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:12.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:12.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:12.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:12.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.630][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:12.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:12.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:12.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:12.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:12.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:12.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:12.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:12.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:12.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:12.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:12.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:12.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.798][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.810][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:12.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:12.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:12.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:12.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:12.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:12.876][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:12.878][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:12.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:12.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:12.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:12.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:12.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:12.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:12.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:12.911][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:12.917][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:12.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-06-15 16:25:12.923][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:12.927][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-06-15 16:25:12.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:12.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:12.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:12.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:12.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:12.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:12.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:12.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:12.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:12.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:12.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:12.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:12.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:12.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:12.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:12.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:12.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.291][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:13.297][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:13.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-06-15 16:25:13.302][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:13.306][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-06-15 16:25:13.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:13.460][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:13.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:13.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:13.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:13.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:13.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:13.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:13.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:13.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:13.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:13.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:13.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:13.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:13.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:13.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:13.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:13.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:13.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:13.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:13.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:13.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:13.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.565][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:13.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:13.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:13.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:13.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:13.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:13.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:13.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:13.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:13.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:13.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:13.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:13.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.667][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:13.669][private$selectFields]
biodb.TRACE[2024-06-15 16:25:13.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:13.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:13.674][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:13.676][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:13.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:13.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.685][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:13.687][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:13.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.696][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.701][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:13.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:13.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.710][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:13.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:13.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.716][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.727][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.736][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.753][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.761][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:13.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:13.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.770][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:13.772][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:13.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.779][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:13.781][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:13.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.788][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:13.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:13.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.797][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:13.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:13.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:13.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:13.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:13.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:13.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.828][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.838][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.840][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.846][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.848][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.862][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.869][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:13.871][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:13.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:13.879][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:13.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.885][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:13.887][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:13.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.893][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:13.895][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:13.897][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:13.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:13.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.905][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:13.907][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:13.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:13.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.921][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:13.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:13.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:13.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:13.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:13.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.942][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:13.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.949][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.951][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:13.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:13.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.963][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:13.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.970][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:13.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:13.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.977][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:13.979][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:13.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.984][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:13.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:13.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:13.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:13.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:13.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:13.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:13.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:14.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:14.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.151][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:14.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-06-15 16:25:14.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:14.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:14.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:14.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:14.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:14.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:14.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:14.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:14.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:14.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:14.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.319][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.392][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.399][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:14.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:14.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.481][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:14.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.496][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:14.498][private$selectFields]
biodb.TRACE[2024-06-15 16:25:14.500][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:14.501][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:14.503][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:14.506][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:14.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:14.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.512][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.514][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.530][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.532][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.536][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.538][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.540][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.554][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.556][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.562][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.569][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.571][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.575][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.577][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.579][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.581][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.583][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.589][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:14.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.594][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.596][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:14.598][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:14.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.601][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.603][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:14.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:14.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.610][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.615][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.622][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.624][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.662][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:14.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.670][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.686][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.688][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.693][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:14.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.704][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:14.706][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:14.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.711][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:14.713][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:14.715][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:14.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:14.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.722][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.724][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.736][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.740][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.744][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.747][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.754][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.756][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.770][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.772][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.777][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.782][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.784][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.786][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:14.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.789][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.791][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:14.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:14.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:14.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:14.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:14.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:14.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:14.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:14.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.957][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:14.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:14.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:14.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:14.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:14.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:14.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:15.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-06-15 16:25:15.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:15.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:15.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:15.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:15.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:15.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:15.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:15.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:15.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:15.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:15.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:15.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:15.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:15.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:15.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:15.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:15.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:15.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:15.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:15.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:15.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:15.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:15.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.166][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:15.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:15.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:15.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:15.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:15.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.226][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:15.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:15.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.235][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:15.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:15.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.242][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:15.244][private$selectFields]
biodb.TRACE[2024-06-15 16:25:15.246][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:15.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:15.249][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:15.251][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:15.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:15.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.259][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:15.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:15.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.264][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.271][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.273][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:15.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:15.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:15.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:15.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.285][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.292][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:15.296][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:15.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.301][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.309][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.311][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.315][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.317][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.319][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.325][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:15.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:15.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.333][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:15.335][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.341][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:15.343][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:15.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.347][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.349][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:15.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:15.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.357][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:15.359][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:15.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.373][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:15.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:15.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.381][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:15.382][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:15.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.389][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:15.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:15.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.401][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.407][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.416][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.423][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:15.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:15.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:15.432][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.435][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.437][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:15.439][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:15.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.444][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:15.446][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:15.448][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:15.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:15.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.455][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:15.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:15.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.468][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:15.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:15.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.474][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.476][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:15.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:15.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.490][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.492][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.498][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.506][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.508][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.516][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:15.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:15.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.522][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.524][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:15.526][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.530][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.531][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:15.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:15.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:15.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:15.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:15.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:15.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:15.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.561][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:15.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:15.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:15.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:15.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:15.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:15.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:15.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:15.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:15.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:15.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:15.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:15.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:15.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:15.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:15.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:15.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:15.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:15.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:15.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:15.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:15.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:15.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:15.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:15.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:15.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:15.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:15.780][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:15.782][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:25:15.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:15.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:15.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:15.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:15.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:15.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:15.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:15.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:15.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:15.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:15.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:15.934][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:15.941][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:15.944][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-15 16:25:15.947][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:15.951][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-15 16:25:15.957][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:15.963][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:15.966][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-15 16:25:15.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:15.972][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-15 16:25:15.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:15.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:15.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:15.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:15.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:15.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:15.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:16.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:16.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:16.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:16.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:16.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:16.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:16.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:16.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:16.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:16.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:16.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:16.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:16.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:16.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:16.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:16.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:16.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:16.111][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:16.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:16.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:16.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:16.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:16.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:16.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:16.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.219][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.252][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:16.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:16.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:16.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:16.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:16.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:16.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:16.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:16.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.283][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:16.284][private$selectFields]
biodb.TRACE[2024-06-15 16:25:16.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:16.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:16.288][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:16.289][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.291][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.294][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.296][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.304][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.305][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.323][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.329][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.331][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.336][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.347][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.349][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.354][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:16.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:16.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:16.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:16.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.366][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.368][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.370][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.373][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.375][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.377][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.389][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.395][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.402][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.409][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.410][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.412][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.430][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.438][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.448][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.449][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.455][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:16.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:16.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.459][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.461][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:16.463][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:16.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.466][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.468][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:16.470][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:16.471][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.478][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.480][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.494][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.496][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.500][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.517][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.521][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.523][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.530][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.537][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.540][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.545][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:16.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:16.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.551][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:16.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:16.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.558][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.559][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:16.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:16.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:16.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:16.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:16.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:16.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:16.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:16.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:16.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:16.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:16.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:16.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:16.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:16.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:16.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:16.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:16.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:16.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:16.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:16.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:16.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:16.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:16.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:16.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:16.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:16.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:16.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:16.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:16.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.957][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:16.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:16.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:16.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:16.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:16.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.062][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:17.064][private$selectFields]
biodb.TRACE[2024-06-15 16:25:17.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:17.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:17.068][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:17.069][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.076][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.082][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.091][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:17.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:17.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:17.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:17.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.114][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.115][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.119][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.121][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.135][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.143][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.151][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.157][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.159][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.161][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.167][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.169][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.183][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:17.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:17.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:17.192][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:17.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.194][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.196][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.197][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.203][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.205][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.211][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.225][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.227][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.232][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.239][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.246][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:17.248][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:17.250][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.257][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.259][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.272][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:17.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:17.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:17.283][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:17.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.287][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.297][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.299][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.305][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.307][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.313][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.321][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.323][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.326][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.328][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.333][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.334][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.335][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.339][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.371][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:17.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:17.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:17.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:17.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:17.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:17.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:17.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:17.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:17.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:17.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:17.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.493][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.501][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.510][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-06-15 16:25:17.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:17.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:17.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:17.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:17.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:17.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:17.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:17.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.696][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:17.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:17.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:17.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:17.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:17.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:17.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.792][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.870][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:17.872][private$selectFields]
biodb.TRACE[2024-06-15 16:25:17.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:17.876][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:17.878][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:17.880][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.888][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.890][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.894][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.904][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:17.906][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:17.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.910][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:17.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:17.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:17.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:17.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.939][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:17.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.946][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:17.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.956][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.958][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:17.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.964][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:17.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:17.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.972][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:17.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:17.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.980][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:17.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:17.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.988][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:17.991][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:17.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:17.994][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:17.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:17.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.005][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:18.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:18.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:18.015][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:18.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.032][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.038][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.040][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.045][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.052][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.059][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:18.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:18.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.066][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:18.067][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:18.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.073][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:18.074][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:18.076][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:18.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:18.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.081][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.083][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:18.085][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:18.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.093][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.095][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:18.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:18.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.100][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:18.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:18.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.108][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.116][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.129][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.131][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.133][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.139][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:18.141][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:18.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.147][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:18.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:18.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.155][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:18.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:18.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:18.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:18.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:18.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:18.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:18.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:18.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:18.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:18.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:18.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:18.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:18.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:18.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:18.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:18.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:18.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:18.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:18.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.349][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:18.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:18.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:18.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:18.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:18.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:18.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:18.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:18.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.416][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:18.418][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:18.419][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:18.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:18.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:18.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:18.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:18.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:18.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:18.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:18.449][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:18.455][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:18.457][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-06-15 16:25:18.460][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:18.463][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-06-15 16:25:18.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:18.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:18.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:18.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:18.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:18.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:18.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:18.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:18.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:18.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:18.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:18.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:18.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:18.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:18.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:18.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:18.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:18.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:18.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:18.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:18.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:18.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:18.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:18.606][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:18.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:18.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:18.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:18.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:18.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:18.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:18.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:18.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:18.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:18.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:18.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:18.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:18.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:18.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:18.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:18.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:18.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:18.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:18.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.731][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.740][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.780][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.788][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:18.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:18.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:18.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:18.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:18.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:18.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.828][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:18.830][private$selectFields]
biodb.TRACE[2024-06-15 16:25:18.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:18.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:18.836][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:18.838][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:18.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:18.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.846][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:18.848][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:18.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.861][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:18.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:18.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:18.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:18.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.876][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.882][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.884][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.889][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.891][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.894][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.896][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.903][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.911][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:18.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:18.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.917][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:18.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:18.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.925][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.927][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:18.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:18.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.934][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:18.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:18.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.939][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:18.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.953][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:18.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:18.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:18.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:18.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:18.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.974][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.975][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:18.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.979][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:18.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:18.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.989][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.991][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:18.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.994][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:18.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:18.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:18.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:18.999][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.004][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:19.006][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:19.007][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.012][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.022][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.027][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.028][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.032][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.035][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.036][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.038][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.041][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.043][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.056][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.058][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.063][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:19.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:19.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.073][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.079][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:19.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.118][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.241][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.249][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.313][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.321][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:19.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:19.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:19.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:19.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:19.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:19.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:19.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:19.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:19.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:19.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:19.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:19.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:19.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:19.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:19.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.604][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:19.606][private$selectFields]
biodb.TRACE[2024-06-15 16:25:19.607][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:19.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:19.611][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:19.613][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.615][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.620][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.622][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.632][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.634][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.649][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.661][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.663][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.675][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.680][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.682][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:19.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:19.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.691][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.703][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.705][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.717][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.719][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.726][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.737][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.738][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.740][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:19.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.743][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.745][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.752][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.759][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.766][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:19.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:19.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.773][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.780][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:19.782][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:19.784][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.786][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.789][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.791][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.793][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.805][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.810][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.817][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.826][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.831][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:19.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.838][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.840][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.842][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:19.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.847][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:19.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:19.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.854][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:19.856][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:19.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.861][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:19.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:19.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:19.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.885][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.899][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:19.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:19.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:19.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:19.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:19.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:19.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:19.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:19.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:19.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.020][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:20.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:20.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:20.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:20.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:20.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:20.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:20.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:20.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:20.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:20.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:20.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:20.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:20.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:20.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:20.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:20.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:20.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.115][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:20.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:20.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:20.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:20.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:20.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:20.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:20.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:20.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:20.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.170][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:20.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:20.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.204][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:20.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:20.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:20.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.248][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:20.250][private$selectFields]
biodb.TRACE[2024-06-15 16:25:20.251][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:20.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:20.254][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:20.255][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:20.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:20.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.260][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.261][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:20.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:20.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.271][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:20.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:20.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.278][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:20.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:20.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.292][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:20.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:20.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.297][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.299][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.312][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.314][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.317][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.319][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:20.324][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:20.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.326][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.327][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:20.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:20.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.333][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:20.335][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:20.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.347][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.349][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:20.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:20.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.356][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:20.358][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:20.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.362][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.364][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.366][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.372][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:20.374][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:20.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.377][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.379][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.381][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.392][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.393][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.396][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.397][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.401][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:20.404][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:20.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.407][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:20.409][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:20.410][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:20.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:20.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.416][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:20.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:20.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.429][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:20.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:20.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:20.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:20.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.438][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.446][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.460][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.462][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.467][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.474][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:20.476][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:20.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.481][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:20.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:20.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:20.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:20.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:20.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:20.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:20.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:20.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:20.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.524][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:20.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:20.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:20.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:20.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:20.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:20.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:20.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:20.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:20.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:20.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:20.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:20.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:20.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:20.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:20.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:20.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.976][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:20.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:20.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:20.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:20.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:21.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:21.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.038][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:21.040][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:21.043][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:21.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:21.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:21.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:21.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:21.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:21.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:21.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:21.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:21.075][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:21.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-06-15 16:25:21.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:21.083][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-06-15 16:25:21.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:21.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:21.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:21.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:21.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:21.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:21.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:21.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:21.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:21.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:21.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:21.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:21.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:21.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:21.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:21.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:21.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:21.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:21.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:21.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:21.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:21.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:21.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:21.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:21.220][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:21.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:21.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:21.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:21.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:21.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:21.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:21.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:21.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.261][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.268][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:21.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:21.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:21.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:21.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:21.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:21.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.403][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:21.404][private$selectFields]
biodb.TRACE[2024-06-15 16:25:21.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:21.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:21.409][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:21.411][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.418][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.419][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.431][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:21.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:21.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.438][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:21.439][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:21.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.451][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.458][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.471][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.473][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.476][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.478][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:21.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:21.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.483][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.484][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.486][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.489][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.491][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.498][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.499][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.509][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.511][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:21.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:21.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:21.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:21.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.537][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.539][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.542][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.547][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.549][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.559][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.564][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:21.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:21.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.576][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.578][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:21.580][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:21.582][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.589][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.595][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.604][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:21.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:21.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.610][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:21.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:21.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.620][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.625][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.627][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.632][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.643][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.645][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.647][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.652][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:21.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:21.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.658][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.660][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.665][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:21.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.689][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.703][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:21.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:21.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:21.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:21.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:21.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:21.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:21.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:21.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:21.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:21.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:21.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.803][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.811][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:21.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:21.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:21.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:21.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:21.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:21.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:21.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:21.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:21.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:21.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:21.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-06-15 16:25:21.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:21.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:21.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:21.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:21.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:21.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:21.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:21.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:21.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:21.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.986][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:21.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:21.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:21.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:21.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:21.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.050][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.057][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.128][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:22.130][private$selectFields]
biodb.TRACE[2024-06-15 16:25:22.131][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:22.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:22.138][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:22.140][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.145][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.157][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.169][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.176][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.179][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.184][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.189][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.191][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.198][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.200][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.202][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.208][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.215][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.225][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.234][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.240][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.251][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.261][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.276][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.284][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.297][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.298][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.301][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.306][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.307][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.311][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:22.312][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:22.314][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.319][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.320][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.332][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.346][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.353][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.366][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.373][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.378][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.380][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.385][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.387][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.407][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.564][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.572][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.644][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-06-15 16:25:22.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:22.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:22.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:22.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:22.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:22.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:22.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:22.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.680][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.807][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.841][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:22.842][private$selectFields]
biodb.TRACE[2024-06-15 16:25:22.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:22.845][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:22.847][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:22.849][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.856][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.858][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.871][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.884][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.886][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.888][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.896][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.901][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.907][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.913][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.915][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.921][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:22.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:22.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.927][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:22.928][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:22.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.934][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:22.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:22.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.942][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:22.944][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:22.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:22.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.955][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:22.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:22.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:22.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:22.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:22.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.976][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.978][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:22.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.983][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:22.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.989][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:22.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.994][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.996][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:22.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:22.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:22.999][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.004][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:23.006][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:23.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.009][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:23.011][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:23.012][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:23.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:23.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.017][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:23.018][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:23.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.020][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.026][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:23.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:23.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:23.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:23.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.035][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.036][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.041][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.042][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.051][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.056][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.060][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.061][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:23.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:23.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.067][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:23.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:23.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:23.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:23.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:23.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:23.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:23.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:23.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:23.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:23.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:23.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:23.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:23.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:23.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:23.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:23.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:23.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:23.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:23.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:23.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:23.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:23.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:23.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:23.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:23.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:23.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:23.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:23.333][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:23.335][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:23.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:23.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:23.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:23.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:23.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:23.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:23.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:23.363][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:23.367][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:23.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-15 16:25:23.372][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:23.375][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-15 16:25:23.380][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:23.385][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:23.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-15 16:25:23.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:23.393][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-15 16:25:23.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:23.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:23.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:23.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:23.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:23.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:23.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:23.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:23.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:23.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:23.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:23.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:23.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:23.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:23.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:23.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:23.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:23.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:23.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:23.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:23.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:23.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:23.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:23.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:23.525][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:23.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:23.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:23.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:23.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:23.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:23.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:23.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:23.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:23.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:23.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:23.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:23.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:23.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:23.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:23.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:23.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:23.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:23.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:23.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:23.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:23.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:23.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:23.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:23.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.629][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.634][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:23.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:23.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:23.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.714][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:23.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:23.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:23.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.728][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:23.730][private$selectFields]
biodb.TRACE[2024-06-15 16:25:23.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:23.733][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:23.735][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:23.736][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:23.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:23.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.744][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:23.745][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:23.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.757][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:23.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:23.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:23.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:23.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.771][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.778][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.785][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.787][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.790][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.792][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.797][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.799][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.804][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.806][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:23.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:23.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.818][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.820][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:23.822][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:23.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.826][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.828][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:23.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:23.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.834][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.836][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:23.838][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:23.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.842][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.853][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:23.855][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:23.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:23.863][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:23.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.866][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.867][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.868][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.872][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.881][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.883][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.888][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.895][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.897][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.902][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.904][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.907][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:23.911][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:23.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.915][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:23.917][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:23.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.921][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:23.923][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:23.924][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:23.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:23.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.928][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.930][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:23.937][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:23.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.939][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:23.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.946][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:23.947][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:23.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:23.954][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:23.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:23.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.966][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:23.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:23.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:23.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.986][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:23.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.991][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:23.993][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:23.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:23.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:23.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.007][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:24.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.149][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.157][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.164][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:24.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:24.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:24.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:24.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:24.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:24.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:24.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:24.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.338][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.413][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.420][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.464][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:24.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:24.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.506][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:24.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:24.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.513][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:24.515][private$selectFields]
biodb.TRACE[2024-06-15 16:25:24.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:24.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:24.520][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:24.522][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.528][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.532][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.537][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.538][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.542][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.550][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.552][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.564][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.569][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.570][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.572][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.579][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.580][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.583][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.588][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.589][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.595][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:24.597][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:24.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.601][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.603][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.610][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.612][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.624][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.629][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.641][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.643][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.645][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.649][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.655][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.663][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.665][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.670][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.683][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:24.684][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:24.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.689][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:24.690][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:24.692][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.696][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.698][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.709][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.714][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.729][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.736][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.752][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.753][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.759][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.765][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.767][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.772][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:24.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:24.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:24.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.793][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:24.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:24.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:24.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:24.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:24.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:24.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:24.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.903][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.910][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:24.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:24.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:24.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:24.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:24.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:24.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:24.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:24.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.024][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-06-15 16:25:25.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:25.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:25.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:25.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:25.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:25.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:25.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:25.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.063][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.070][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.145][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.194][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.200][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:25.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:25.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:25.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:25.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:25.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:25.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:25.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.230][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:25.231][private$selectFields]
biodb.TRACE[2024-06-15 16:25:25.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:25.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:25.235][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:25.236][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.240][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.242][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.244][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.252][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.253][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.268][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.269][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.272][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.273][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.279][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.283][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.284][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.287][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.289][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:25.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:25.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.292][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.293][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.297][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.298][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:25.300][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:25.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.303][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.308][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.321][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.324][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.334][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.336][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.340][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.347][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.352][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.353][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.356][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.357][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:25.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:25.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.362][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.364][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.366][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.367][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:25.369][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:25.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.373][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:25.374][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:25.375][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.380][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.389][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.390][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.406][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.407][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.416][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.421][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:25.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:25.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.428][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.430][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.435][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:25.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.461][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.602][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.607][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:25.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:25.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:25.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:25.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:25.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:25.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:25.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:25.667][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:25.669][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:25.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:25.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:25.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:25.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:25.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:25.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:25.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:25.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:25.699][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:25.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-06-15 16:25:25.704][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:25.708][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-06-15 16:25:25.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:25.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:25.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:25.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:25.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:25.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:25.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:25.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:25.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:25.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:25.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:25.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:25.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:25.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:25.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:25.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:25.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:25.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:25.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:25.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:25.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:25.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:25.847][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:25.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:25.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:25.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:25.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:25.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:25.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:25.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:25.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.885][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.890][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:25.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:25.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:25.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:25.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.960][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:25.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:25.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.067][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.074][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:26.076][private$selectFields]
biodb.TRACE[2024-06-15 16:25:26.078][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:26.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:26.081][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:26.083][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.090][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.092][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.095][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.102][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.104][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.106][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.113][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.118][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.120][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.125][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.126][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.130][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.131][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.133][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.144][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.145][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.147][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.152][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.157][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.166][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.168][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.173][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.181][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.195][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.217][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.222][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.237][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.239][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.244][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.251][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.253][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.256][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.258][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.272][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:26.274][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:26.276][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.281][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.283][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.285][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.288][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.297][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.319][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.321][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.324][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.326][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.340][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.346][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.348][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.355][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.360][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:26.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.397][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.489][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.556][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.630][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:26.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:26.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:26.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:26.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:26.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:26.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:26.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:26.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.750][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.798][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.849][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.856][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:26.858][private$selectFields]
biodb.TRACE[2024-06-15 16:25:26.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:26.861][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:26.863][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:26.865][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.872][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.874][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.884][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.886][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.907][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.909][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.911][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:26.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.916][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.918][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:26.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.923][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.925][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:26.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.932][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:26.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.937][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.939][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:26.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.943][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.944][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:26.946][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:26.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.952][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:26.954][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:26.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.959][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.961][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:26.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.967][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:26.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:26.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.974][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:26.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:26.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:26.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.988][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:26.990][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:26.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:26.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:26.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:26.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:26.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.010][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.015][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.020][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.022][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.032][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.034][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.037][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.039][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.047][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.052][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.054][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.059][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:27.061][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:27.063][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.070][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.071][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.082][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.083][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.099][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.100][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.105][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.111][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.119][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.126][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.133][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.140][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:27.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:27.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:27.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:27.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:27.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:27.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:27.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.544][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.600][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:27.601][private$selectFields]
biodb.TRACE[2024-06-15 16:25:27.603][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:27.604][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:27.606][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:27.608][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.613][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.615][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.628][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.630][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.637][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.647][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.649][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.656][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.669][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.676][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.689][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.691][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.703][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.705][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.717][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.737][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:27.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.746][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.758][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.765][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.774][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.779][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.781][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:27.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.785][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.786][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:27.788][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:27.790][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.797][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.811][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.817][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.820][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.831][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:27.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.837][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:27.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.846][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.848][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:27.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.851][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.853][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:27.855][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:27.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:27.862][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:27.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.867][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:27.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:27.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.898][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:27.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:27.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:27.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:27.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:27.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:27.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:28.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:28.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:28.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:28.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:28.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:28.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:28.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:28.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-06-15 16:25:28.135][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:28.137][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:25:28.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:28.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:28.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:28.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:28.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:28.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:28.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:25:28.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-15 16:25:28.170][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:25:28.172][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-06-15 16:25:28.175][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:25:28.181][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-06-15 16:25:28.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:28.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:28.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:28.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:28.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:28.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:28.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:28.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:28.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:28.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:28.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:28.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:28.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:28.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:28.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:28.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:28.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:28.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:28.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:28.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:28.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:28.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:28.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:28.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:25:28.323][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:25:28.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:28.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:28.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:28.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:28.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:28.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:28.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:28.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:28.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:28.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:28.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.360][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:28.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:28.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:28.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:28.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:28.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:28.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:28.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:28.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:28.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:28.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.472][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:28.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:28.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:28.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:28.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:28.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.524][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:28.525][private$selectFields]
biodb.TRACE[2024-06-15 16:25:28.527][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:28.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:28.531][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:28.533][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:28.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:28.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.540][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:28.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:28.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.554][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:28.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:28.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.559][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.561][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:28.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:28.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.566][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.568][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.575][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.577][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.580][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.582][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.595][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.597][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.600][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.602][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:28.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:28.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:28.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:28.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.616][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:28.617][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:28.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.622][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:28.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:28.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.629][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:28.631][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:28.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.641][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.643][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:28.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:28.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.650][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:28.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:28.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.655][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.657][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.664][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.669][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.671][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.673][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.685][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.687][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.692][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:28.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:28.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:28.701][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:28.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.705][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.706][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:28.708][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:28.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.713][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:28.715][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:28.717][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:28.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:28.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.733][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:28.735][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:28.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.739][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.750][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:28.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:28.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:28.760][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:28.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.774][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.782][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.784][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.789][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:28.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.797][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.800][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:28.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.805][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:28.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:28.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:28.815][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:28.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.821][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:28.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:28.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:28.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:28.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:28.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:28.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:28.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:28.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:28.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:28.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:28.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:28.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:28.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:28.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:28.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:28.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:28.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:28.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.965][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.981][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:28.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:28.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.035][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.042][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.049][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-06-15 16:25:29.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:29.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:29.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:29.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:29.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:29.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:29.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.144][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.216][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.272][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.328][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:29.330][private$selectFields]
biodb.TRACE[2024-06-15 16:25:29.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:29.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:29.335][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:29.337][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.345][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.347][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.361][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.363][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.367][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.369][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.371][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.392][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.402][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.404][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.410][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.419][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.423][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.425][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.430][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.432][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.434][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.439][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:29.441][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:29.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.446][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.453][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.464][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.466][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.478][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.484][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.493][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.506][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.507][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.509][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.513][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.514][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.528][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:29.530][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:29.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.536][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:29.538][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:29.540][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.548][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.549][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.555][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.563][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.575][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.584][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.598][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.600][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.604][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.610][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.616][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:29.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.645][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:29.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:29.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:29.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:29.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:29.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.869][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-06-15 16:25:29.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:25:29.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:29.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:29.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:29.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:29.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:29.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:25:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:29.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:29.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:29.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:29.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:29.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:29.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:29.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:30.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:30.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:30.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:30.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:30.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:30.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:30.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:30.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.090][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:30.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:30.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.105][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:30.106][private$selectFields]
biodb.TRACE[2024-06-15 16:25:30.108][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:25:30.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:25:30.111][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-06-15 16:25:30.113][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:30.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:30.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.118][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.120][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:30.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:30.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.134][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:30.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:30.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.141][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:30.142][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:30.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.154][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:30.156][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:30.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.161][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.168][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.175][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.182][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:30.184][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:30.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.189][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:30.191][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:30.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.194][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.196][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:30.198][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:30.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.203][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:30.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:30.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.210][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:30.212][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:30.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.215][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.224][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:30.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:30.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:30.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:30.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.236][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.243][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:30.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-15 16:25:30.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.252][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.264][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.266][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.268][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.271][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.273][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:30.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:30.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:30.282][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:30.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.285][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.287][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:25:30.289][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:25:30.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.292][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.294][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:30.296][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-06-15 16:25:30.297][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:30.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:30.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.304][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:30.306][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:30.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.318][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:30.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:30.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:30.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:30.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.330][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.332][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.339][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.353][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.355][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.360][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:30.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:30.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.367][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:30.369][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:30.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.374][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-06-15 16:25:30.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:25:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:25:30.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:30.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-15 16:25:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-15 16:25:30.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-15 16:25:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:30.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:30.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:30.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:30.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:25:30.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:25:30.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:30.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:30.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:25:30.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:25:30.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:25:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:25:30.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:25:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-15 16:25:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:30.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:25:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:25:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:30.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:30.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-15 16:25:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-15 16:25:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-06-15 16:25:30.629][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:25:30.631][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:25:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:25:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:25:30.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.643][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:25:30.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:25:30.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:25:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:25:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:25:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:25:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:25:30.664][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-15 16:25:30.666][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-06-15 16:25:30.668][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-06-15 16:25:30.670][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-15 16:25:30.672][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:25:30.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:25:30.675][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:25:30.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:25:30.678][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:25:30.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 1100 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
▆
1. ├─base::do.call(fct, params)
2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
3. └─conn$annotateMzValues(...)
4. └─self$searchForEntries(fieldsFilter, max.results = max.results)
5. └─private$doSearchForEntries(fields = fields, max.results = max.results)
6. └─private$searchByMass(...)
7. └─private$filterIdsOnMassRange(...)
8. └─self$getEntry(id, drop = TRUE)
9. └─private$bdb$getFactory()$getEntry(self$getId(), id = id, drop = drop)
10. └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
11. └─conn$getEntryContent(ids)
12. └─self$getEntryContentFromDb(ch.missing.ids)
13. └─private$doGetEntryContentFromDb(entry.id)
14. └─private$doGetEntryContentOneByOne(id)
15. └─scheduler$sendRequest(requests[[i]])
16. └─cch$saveContentToFile(...)
17. └─private$doSaveContentToFile(...)
18. └─biodb:::saveContentsToFiles(file.paths, content)
19. └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
20. └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
21. └─base::cat(cnt, file = f)
22. └─base::file(file, ifelse(append, "a", "w"))
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 1100 ]
Error: Test failures
Execution halted
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.11.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... OK
* checking tests in 'longtests' ...
Running 'testthat.R'
ERROR
Running the tests in 'longtests/testthat.R' failed.
Last 13 lines of output:
12. └─self$getEntryContentFromDb(ch.missing.ids)
13. └─private$doGetEntryContentFromDb(entry.id)
14. └─private$doGetEntryContentOneByOne(id)
15. └─scheduler$sendRequest(requests[[i]])
16. └─cch$saveContentToFile(...)
17. └─private$doSaveContentToFile(...)
18. └─biodb:::saveContentsToFiles(file.paths, content)
19. └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
20. └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
21. └─base::cat(cnt, file = f)
22. └─base::file(file, ifelse(append, "a", "w"))
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 1100 ]
Error: Test failures
Execution halted
* DONE
Status: 1 ERROR
See
'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/00check.log'
for details.
biodbChebi.Rcheck/00install.out
* installing *source* package 'biodbChebi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)